Strain Fitness in Escherichia coli ECRC102 around NIAGMN_05020

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_05015 and NIAGMN_05020 are separated by 58 nucleotidesNIAGMN_05020 and NIAGMN_05025 are separated by 138 nucleotidesNIAGMN_05025 and fimC are separated by 14 nucleotides NIAGMN_05015: NIAGMN_05015 - Fimbrial protein, at 911,597 to 912,163 _05015 NIAGMN_05020: NIAGMN_05020 - Fimbrial biogenesis outer membrane usher protein, at 912,222 to 914,384 _05020 NIAGMN_05025: NIAGMN_05025 - Outer membrane protein, at 914,523 to 914,672 _05025 NIAGMN_05030: fimC - molecular chaperone, at 914,687 to 915,418 fimC Position (kb) 912 913 914 915Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 911.228 kb on + strandat 911.281 kb on - strandat 911.343 kb on + strandat 911.544 kb on + strandat 911.769 kb on + strand, within NIAGMN_05015at 912.007 kb on + strand, within NIAGMN_05015at 912.212 kb on + strandat 912.393 kb on - strandat 912.608 kb on + strand, within NIAGMN_05020at 912.721 kb on - strand, within NIAGMN_05020at 912.874 kb on - strand, within NIAGMN_05020at 912.898 kb on + strand, within NIAGMN_05020at 912.899 kb on - strand, within NIAGMN_05020at 912.899 kb on - strand, within NIAGMN_05020at 912.899 kb on - strand, within NIAGMN_05020at 912.899 kb on - strand, within NIAGMN_05020at 912.961 kb on - strand, within NIAGMN_05020at 913.089 kb on + strand, within NIAGMN_05020at 913.118 kb on + strand, within NIAGMN_05020at 913.119 kb on - strand, within NIAGMN_05020at 913.151 kb on + strand, within NIAGMN_05020at 913.151 kb on + strand, within NIAGMN_05020at 913.251 kb on + strand, within NIAGMN_05020at 913.316 kb on + strand, within NIAGMN_05020at 913.357 kb on + strand, within NIAGMN_05020at 913.357 kb on + strand, within NIAGMN_05020at 913.358 kb on - strand, within NIAGMN_05020at 913.358 kb on - strand, within NIAGMN_05020at 913.358 kb on - strand, within NIAGMN_05020at 913.360 kb on - strand, within NIAGMN_05020at 913.390 kb on - strand, within NIAGMN_05020at 913.422 kb on - strand, within NIAGMN_05020at 913.514 kb on + strand, within NIAGMN_05020at 913.519 kb on - strand, within NIAGMN_05020at 913.567 kb on - strand, within NIAGMN_05020at 913.597 kb on - strand, within NIAGMN_05020at 913.606 kb on - strand, within NIAGMN_05020at 913.621 kb on - strand, within NIAGMN_05020at 913.621 kb on - strand, within NIAGMN_05020at 913.621 kb on - strand, within NIAGMN_05020at 913.683 kb on - strand, within NIAGMN_05020at 913.697 kb on + strand, within NIAGMN_05020at 913.934 kb on + strand, within NIAGMN_05020at 913.935 kb on - strand, within NIAGMN_05020at 913.937 kb on + strand, within NIAGMN_05020at 914.005 kb on + strand, within NIAGMN_05020at 914.095 kb on - strand, within NIAGMN_05020at 914.095 kb on - strand, within NIAGMN_05020at 914.274 kb on - strandat 914.284 kb on + strandat 914.301 kb on + strandat 914.301 kb on + strandat 914.779 kb on + strand, within fimCat 914.783 kb on - strand, within fimCat 915.003 kb on - strand, within fimCat 915.005 kb on + strand, within fimCat 915.006 kb on - strand, within fimCat 915.085 kb on + strand, within fimCat 915.086 kb on - strand, within fimCat 915.086 kb on - strand, within fimCat 915.090 kb on + strand, within fimCat 915.147 kb on + strand, within fimCat 915.148 kb on - strand, within fimCat 915.167 kb on - strand, within fimCat 915.201 kb on - strand, within fimCat 915.201 kb on - strand, within fimCat 915.201 kb on - strand, within fimCat 915.201 kb on - strand, within fimCat 915.201 kb on - strand, within fimCat 915.253 kb on + strand, within fimCat 915.254 kb on - strand, within fimCat 915.306 kb on - strand, within fimCat 915.332 kb on + strand, within fimC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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911,228 + -3.0
911,281 - -2.0
911,343 + +0.5
911,544 + +0.9
911,769 + NIAGMN_05015 0.30 -2.0
912,007 + NIAGMN_05015 0.72 -1.0
912,212 + +0.1
912,393 - +1.6
912,608 + NIAGMN_05020 0.18 +0.3
912,721 - NIAGMN_05020 0.23 +1.0
912,874 - NIAGMN_05020 0.30 +1.2
912,898 + NIAGMN_05020 0.31 -0.1
912,899 - NIAGMN_05020 0.31 +0.2
912,899 - NIAGMN_05020 0.31 +0.0
912,899 - NIAGMN_05020 0.31 -0.4
912,899 - NIAGMN_05020 0.31 -0.7
912,961 - NIAGMN_05020 0.34 +0.1
913,089 + NIAGMN_05020 0.40 -0.1
913,118 + NIAGMN_05020 0.41 +0.5
913,119 - NIAGMN_05020 0.41 +0.2
913,151 + NIAGMN_05020 0.43 +1.2
913,151 + NIAGMN_05020 0.43 +0.4
913,251 + NIAGMN_05020 0.48 -1.7
913,316 + NIAGMN_05020 0.51 +0.9
913,357 + NIAGMN_05020 0.52 +0.3
913,357 + NIAGMN_05020 0.52 +0.7
913,358 - NIAGMN_05020 0.53 +0.9
913,358 - NIAGMN_05020 0.53 +0.9
913,358 - NIAGMN_05020 0.53 -1.4
913,360 - NIAGMN_05020 0.53 -0.7
913,390 - NIAGMN_05020 0.54 +0.4
913,422 - NIAGMN_05020 0.55 +1.9
913,514 + NIAGMN_05020 0.60 +2.4
913,519 - NIAGMN_05020 0.60 +2.7
913,567 - NIAGMN_05020 0.62 -1.7
913,597 - NIAGMN_05020 0.64 -1.5
913,606 - NIAGMN_05020 0.64 -0.4
913,621 - NIAGMN_05020 0.65 +0.4
913,621 - NIAGMN_05020 0.65 +0.6
913,621 - NIAGMN_05020 0.65 -0.6
913,683 - NIAGMN_05020 0.68 -1.5
913,697 + NIAGMN_05020 0.68 -0.3
913,934 + NIAGMN_05020 0.79 +1.6
913,935 - NIAGMN_05020 0.79 -1.7
913,937 + NIAGMN_05020 0.79 +1.7
914,005 + NIAGMN_05020 0.82 -1.1
914,095 - NIAGMN_05020 0.87 -1.7
914,095 - NIAGMN_05020 0.87 -0.7
914,274 - -1.1
914,284 + -0.6
914,301 + -0.6
914,301 + +2.5
914,779 + fimC NIAGMN_05030 0.13 +1.6
914,783 - fimC NIAGMN_05030 0.13 +0.6
915,003 - fimC NIAGMN_05030 0.43 -1.8
915,005 + fimC NIAGMN_05030 0.43 +0.1
915,006 - fimC NIAGMN_05030 0.44 -0.5
915,085 + fimC NIAGMN_05030 0.54 +2.5
915,086 - fimC NIAGMN_05030 0.55 -0.1
915,086 - fimC NIAGMN_05030 0.55 +0.1
915,090 + fimC NIAGMN_05030 0.55 +0.3
915,147 + fimC NIAGMN_05030 0.63 -2.6
915,148 - fimC NIAGMN_05030 0.63 +0.1
915,167 - fimC NIAGMN_05030 0.66 -0.5
915,201 - fimC NIAGMN_05030 0.70 -0.1
915,201 - fimC NIAGMN_05030 0.70 -0.7
915,201 - fimC NIAGMN_05030 0.70 +0.3
915,201 - fimC NIAGMN_05030 0.70 +0.2
915,201 - fimC NIAGMN_05030 0.70 -0.7
915,253 + fimC NIAGMN_05030 0.77 +1.8
915,254 - fimC NIAGMN_05030 0.77 -0.8
915,306 - fimC NIAGMN_05030 0.85 +1.4
915,332 + fimC NIAGMN_05030 0.88 -0.4

Or see this region's nucleotide sequence