Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Lys_trna and cpoB are separated by 164 nucleotides cpoB and pal are separated by 9 nucleotides pal and tolB are separated by 34 nucleotides
NIAGMN_04840: Lys_trna - tRNA-Lys(ttt), at 875,986 to 876,061
_trna
NIAGMN_04845: cpoB - cell division protein CpoB, at 876,226 to 877,017
cpoB
NIAGMN_04850: pal - peptidoglycan-associated lipoprotein Pal, at 877,027 to 877,548
pal
NIAGMN_04855: tolB - Tol-Pal system protein TolB, at 877,583 to 878,875
tolB
Position (kb) 877
878 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 876.155 kb on - strand at 876.155 kb on - strand at 876.172 kb on - strand at 876.221 kb on - strand at 876.221 kb on - strand at 876.221 kb on - strand at 876.227 kb on + strand at 876.228 kb on - strand at 876.228 kb on - strand at 876.228 kb on - strand at 876.228 kb on - strand at 876.228 kb on - strand at 876.270 kb on + strand at 876.271 kb on - strand at 876.271 kb on - strand at 876.279 kb on - strand at 876.279 kb on - strand at 876.390 kb on - strand, within cpoB at 876.390 kb on - strand, within cpoB at 876.414 kb on - strand, within cpoB at 876.414 kb on - strand, within cpoB at 876.447 kb on - strand, within cpoB at 876.447 kb on - strand, within cpoB at 876.447 kb on - strand, within cpoB at 876.447 kb on - strand, within cpoB at 876.485 kb on + strand, within cpoB at 876.485 kb on + strand, within cpoB at 876.486 kb on - strand, within cpoB at 876.571 kb on - strand, within cpoB at 876.571 kb on - strand, within cpoB at 876.581 kb on + strand, within cpoB at 876.582 kb on - strand, within cpoB at 876.631 kb on - strand, within cpoB at 876.876 kb on + strand, within cpoB at 876.877 kb on - strand, within cpoB at 876.924 kb on + strand, within cpoB at 876.965 kb on - strand at 876.966 kb on + strand at 876.967 kb on - strand at 876.992 kb on - strand at 876.992 kb on - strand at 877.032 kb on - strand at 877.032 kb on - strand at 877.155 kb on - strand, within pal at 877.162 kb on - strand, within pal at 877.234 kb on + strand, within pal at 877.235 kb on - strand, within pal at 877.248 kb on - strand, within pal at 877.261 kb on - strand, within pal at 877.317 kb on - strand, within pal at 877.317 kb on - strand, within pal at 877.335 kb on - strand, within pal at 877.422 kb on + strand, within pal at 877.567 kb on - strand at 877.705 kb on - strand at 877.841 kb on - strand, within tolB at 877.898 kb on - strand, within tolB at 877.898 kb on - strand, within tolB at 877.898 kb on - strand, within tolB at 877.963 kb on + strand, within tolB at 877.964 kb on - strand, within tolB at 878.061 kb on - strand, within tolB at 878.065 kb on - strand, within tolB at 878.193 kb on - strand, within tolB at 878.230 kb on - strand, within tolB at 878.230 kb on - strand, within tolB at 878.240 kb on - strand, within tolB at 878.308 kb on - strand, within tolB at 878.371 kb on - strand, within tolB at 878.449 kb on - strand, within tolB at 878.530 kb on - strand, within tolB at 878.541 kb on + strand, within tolB
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 876,155 - -1.2 876,155 - -2.6 876,172 - -1.1 876,221 - -0.9 876,221 - -0.4 876,221 - -2.1 876,227 + -0.3 876,228 - -1.6 876,228 - -0.5 876,228 - -0.1 876,228 - +0.4 876,228 - -0.3 876,270 + -0.6 876,271 - +0.5 876,271 - -0.8 876,279 - -0.8 876,279 - -0.5 876,390 - cpoB NIAGMN_04845 0.21 +0.0 876,390 - cpoB NIAGMN_04845 0.21 -0.1 876,414 - cpoB NIAGMN_04845 0.24 +2.0 876,414 - cpoB NIAGMN_04845 0.24 -0.6 876,447 - cpoB NIAGMN_04845 0.28 +0.3 876,447 - cpoB NIAGMN_04845 0.28 +0.5 876,447 - cpoB NIAGMN_04845 0.28 -0.3 876,447 - cpoB NIAGMN_04845 0.28 +0.3 876,485 + cpoB NIAGMN_04845 0.33 +0.6 876,485 + cpoB NIAGMN_04845 0.33 -0.6 876,486 - cpoB NIAGMN_04845 0.33 -0.5 876,571 - cpoB NIAGMN_04845 0.44 -0.7 876,571 - cpoB NIAGMN_04845 0.44 -0.5 876,581 + cpoB NIAGMN_04845 0.45 -3.0 876,582 - cpoB NIAGMN_04845 0.45 +1.2 876,631 - cpoB NIAGMN_04845 0.51 -0.7 876,876 + cpoB NIAGMN_04845 0.82 -1.1 876,877 - cpoB NIAGMN_04845 0.82 -2.4 876,924 + cpoB NIAGMN_04845 0.88 -0.1 876,965 - +1.2 876,966 + +0.2 876,967 - -1.0 876,992 - +1.1 876,992 - -0.5 877,032 - +1.0 877,032 - +0.0 877,155 - pal NIAGMN_04850 0.25 -2.1 877,162 - pal NIAGMN_04850 0.26 -2.4 877,234 + pal NIAGMN_04850 0.40 -2.7 877,235 - pal NIAGMN_04850 0.40 -3.0 877,248 - pal NIAGMN_04850 0.42 -1.4 877,261 - pal NIAGMN_04850 0.45 -2.4 877,317 - pal NIAGMN_04850 0.56 -0.7 877,317 - pal NIAGMN_04850 0.56 -0.6 877,335 - pal NIAGMN_04850 0.59 -2.1 877,422 + pal NIAGMN_04850 0.76 -2.2 877,567 - -0.1 877,705 - -2.0 877,841 - tolB NIAGMN_04855 0.20 -0.4 877,898 - tolB NIAGMN_04855 0.24 -1.1 877,898 - tolB NIAGMN_04855 0.24 -1.8 877,898 - tolB NIAGMN_04855 0.24 -0.4 877,963 + tolB NIAGMN_04855 0.29 -0.1 877,964 - tolB NIAGMN_04855 0.29 -1.7 878,061 - tolB NIAGMN_04855 0.37 -2.3 878,065 - tolB NIAGMN_04855 0.37 -0.1 878,193 - tolB NIAGMN_04855 0.47 -2.6 878,230 - tolB NIAGMN_04855 0.50 -2.2 878,230 - tolB NIAGMN_04855 0.50 -2.2 878,240 - tolB NIAGMN_04855 0.51 -1.1 878,308 - tolB NIAGMN_04855 0.56 +0.5 878,371 - tolB NIAGMN_04855 0.61 -1.8 878,449 - tolB NIAGMN_04855 0.67 -2.1 878,530 - tolB NIAGMN_04855 0.73 -1.6 878,541 + tolB NIAGMN_04855 0.74 -0.7
Or see this region's nucleotide sequence