Experiment: Sodium-DL-Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt NIAGMN_03920 and ybjP are separated by 623 nucleotides ybjP and artP are separated by 217 nucleotides artP and artI are separated by 17 nucleotides
NIAGMN_03920: NIAGMN_03920 - hypothetical protein, at 706,111 to 707,352
_03920
NIAGMN_03925: ybjP - lipoprotein, at 707,976 to 708,491
ybjP
NIAGMN_03930: artP - arginine ABC transporter ATP-binding protein ArtP, at 708,709 to 709,437
artP
NIAGMN_03935: artI - Putative ABC transporter arginine-binding protein 2, at 709,455 to 710,186
artI
Position (kb) 707
708
709 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 707.730 kb on + strand at 707.758 kb on + strand at 707.758 kb on + strand at 707.760 kb on + strand at 707.811 kb on + strand at 707.812 kb on - strand at 707.960 kb on + strand at 707.992 kb on + strand at 707.992 kb on + strand at 707.999 kb on - strand at 708.051 kb on + strand, within ybjP at 708.051 kb on + strand, within ybjP at 708.059 kb on + strand, within ybjP at 708.121 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.197 kb on - strand, within ybjP at 708.200 kb on + strand, within ybjP at 708.221 kb on + strand, within ybjP at 708.306 kb on - strand, within ybjP at 708.385 kb on + strand, within ybjP at 708.429 kb on + strand, within ybjP at 708.433 kb on + strand, within ybjP at 708.588 kb on + strand at 708.589 kb on - strand at 708.601 kb on + strand at 708.601 kb on + strand at 708.678 kb on + strand at 708.679 kb on - strand at 708.806 kb on + strand, within artP at 708.979 kb on + strand, within artP at 708.979 kb on + strand, within artP at 709.037 kb on + strand, within artP at 709.108 kb on + strand, within artP at 709.109 kb on - strand, within artP at 709.193 kb on + strand, within artP at 709.281 kb on + strand, within artP at 709.284 kb on + strand, within artP at 709.345 kb on + strand, within artP at 709.345 kb on + strand, within artP at 709.345 kb on + strand, within artP at 709.346 kb on - strand, within artP at 709.347 kb on + strand, within artP at 709.367 kb on + strand at 709.367 kb on + strand at 709.416 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Sodium-DL-Lactate remove 707,730 + +0.1 707,758 + -0.8 707,758 + +0.8 707,760 + -1.0 707,811 + -2.2 707,812 - -0.4 707,960 + -0.6 707,992 + -0.4 707,992 + +0.2 707,999 - -0.4 708,051 + ybjP NIAGMN_03925 0.15 -0.3 708,051 + ybjP NIAGMN_03925 0.15 +1.5 708,059 + ybjP NIAGMN_03925 0.16 +1.1 708,121 - ybjP NIAGMN_03925 0.28 -0.7 708,197 - ybjP NIAGMN_03925 0.43 -0.2 708,197 - ybjP NIAGMN_03925 0.43 -0.4 708,197 - ybjP NIAGMN_03925 0.43 -0.2 708,197 - ybjP NIAGMN_03925 0.43 -2.8 708,200 + ybjP NIAGMN_03925 0.43 +0.0 708,221 + ybjP NIAGMN_03925 0.47 -3.1 708,306 - ybjP NIAGMN_03925 0.64 +0.5 708,385 + ybjP NIAGMN_03925 0.79 -0.1 708,429 + ybjP NIAGMN_03925 0.88 -0.2 708,433 + ybjP NIAGMN_03925 0.89 -0.3 708,588 + -0.2 708,589 - +0.7 708,601 + +0.7 708,601 + +1.6 708,678 + +2.0 708,679 - +1.2 708,806 + artP NIAGMN_03930 0.13 -1.7 708,979 + artP NIAGMN_03930 0.37 +0.1 708,979 + artP NIAGMN_03930 0.37 -0.2 709,037 + artP NIAGMN_03930 0.45 +0.0 709,108 + artP NIAGMN_03930 0.55 -2.1 709,109 - artP NIAGMN_03930 0.55 +0.8 709,193 + artP NIAGMN_03930 0.66 -1.5 709,281 + artP NIAGMN_03930 0.78 +0.8 709,284 + artP NIAGMN_03930 0.79 -0.3 709,345 + artP NIAGMN_03930 0.87 +1.8 709,345 + artP NIAGMN_03930 0.87 +0.6 709,345 + artP NIAGMN_03930 0.87 -2.0 709,346 - artP NIAGMN_03930 0.87 -0.6 709,347 + artP NIAGMN_03930 0.88 -0.2 709,367 + +0.3 709,367 + +0.3 709,416 + -1.1
Or see this region's nucleotide sequence