Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02395

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfliO and fliP overlap by 1 nucleotidesfliP and fliQ are separated by 9 nucleotidesfliQ and fliR are separated by 7 nucleotides NIAGMN_02385: fliO - flagellar type III secretion system protein FliO, at 421,639 to 422,004 fliO NIAGMN_02390: fliP - flagellar type III secretion system pore protein FliP, at 422,004 to 422,741 fliP NIAGMN_02395: fliQ - flagellar biosynthesis protein FliQ, at 422,751 to 423,020 fliQ NIAGMN_02400: fliR - flagellar type III secretion system protein FliR, at 423,028 to 423,813 fliR Position (kb) 422 423 424Strain fitness (log2 ratio) -2 -1 0 1at 421.944 kb on - strand, within fliOat 422.259 kb on - strand, within fliPat 422.267 kb on - strand, within fliPat 422.733 kb on + strandat 422.996 kb on + strandat 423.006 kb on + strandat 423.028 kb on - strandat 423.073 kb on + strandat 423.285 kb on + strand, within fliRat 423.388 kb on - strand, within fliRat 423.388 kb on - strand, within fliRat 423.458 kb on + strand, within fliRat 423.459 kb on - strand, within fliRat 423.646 kb on - strand, within fliRat 423.790 kb on - strandat 423.985 kb on + strandat 423.985 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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421,944 - fliO NIAGMN_02385 0.83 -1.1
422,259 - fliP NIAGMN_02390 0.35 -0.2
422,267 - fliP NIAGMN_02390 0.36 +1.2
422,733 + -1.0
422,996 + +0.9
423,006 + +0.9
423,028 - +0.4
423,073 + -1.0
423,285 + fliR NIAGMN_02400 0.33 +0.2
423,388 - fliR NIAGMN_02400 0.46 -1.5
423,388 - fliR NIAGMN_02400 0.46 -1.9
423,458 + fliR NIAGMN_02400 0.55 -0.0
423,459 - fliR NIAGMN_02400 0.55 -1.2
423,646 - fliR NIAGMN_02400 0.79 -0.0
423,790 - -0.1
423,985 + -0.5
423,985 + -2.4

Or see this region's nucleotide sequence