Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02330

Experiment: Sodium-DL-Lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntespR3 and espR4 are separated by 818 nucleotidesespR4 and fliE are separated by 348 nucleotidesfliE and fliF are separated by 214 nucleotides NIAGMN_02325: espR3 - Type III secretion system effector espR3, at 409,327 to 410,466 espR3 NIAGMN_02330: espR4 - T3SS effector leucine-rich repeat protein EspR4, at 411,285 to 412,424 espR4 NIAGMN_02335: fliE - flagellar hook-basal body complex protein FliE, at 412,773 to 413,087 fliE NIAGMN_02340: fliF - flagellar M-ring protein FliF, at 413,302 to 414,960 fliF Position (kb) 411 412 413Strain fitness (log2 ratio) -1 0 1at 411.221 kb on - strandat 412.775 kb on - strandat 412.817 kb on + strand, within fliEat 413.047 kb on - strand, within fliEat 413.154 kb on + strandat 413.155 kb on - strandat 413.206 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
remove
411,221 - -0.5
412,775 - +0.7
412,817 + fliE NIAGMN_02335 0.14 -0.7
413,047 - fliE NIAGMN_02335 0.87 -0.5
413,154 + +0.8
413,155 - +1.3
413,206 + +0.2

Or see this region's nucleotide sequence