Strain Fitness in Escherichia coli ECRC102 around NIAGMN_02310

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyedE and yedF overlap by 4 nucleotidesyedF and yedK are separated by 108 nucleotidesyedK and yedL are separated by 110 nucleotides NIAGMN_02305: yedE - selenium metabolism membrane protein YedE/FdhT, at 406,387 to 407,592 yedE NIAGMN_02310: yedF - sulfurtransferase-like selenium metabolism protein YedF, at 407,589 to 407,822 yedF NIAGMN_02315: yedK - Abasic site processing protein YedK, at 407,931 to 408,599 yedK NIAGMN_02320: yedL - Uncharacterized N-acetyltransferase YedL, at 408,710 to 409,189 yedL Position (kb) 407 408Strain fitness (log2 ratio) -1 0 1 2at 406.590 kb on + strand, within yedEat 406.695 kb on - strand, within yedEat 406.735 kb on - strand, within yedEat 407.149 kb on - strand, within yedEat 407.154 kb on + strand, within yedEat 407.209 kb on + strand, within yedEat 407.213 kb on + strand, within yedEat 407.213 kb on + strand, within yedEat 407.273 kb on + strand, within yedEat 407.326 kb on + strand, within yedEat 407.326 kb on + strand, within yedEat 407.401 kb on + strand, within yedEat 407.805 kb on + strandat 407.821 kb on - strandat 407.870 kb on - strandat 407.912 kb on - strandat 407.931 kb on - strandat 407.931 kb on - strandat 408.037 kb on - strand, within yedKat 408.186 kb on - strand, within yedKat 408.186 kb on - strand, within yedKat 408.400 kb on + strand, within yedK

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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406,590 + yedE NIAGMN_02305 0.17 +1.6
406,695 - yedE NIAGMN_02305 0.26 +0.2
406,735 - yedE NIAGMN_02305 0.29 +0.0
407,149 - yedE NIAGMN_02305 0.63 +0.4
407,154 + yedE NIAGMN_02305 0.64 -1.3
407,209 + yedE NIAGMN_02305 0.68 +2.4
407,213 + yedE NIAGMN_02305 0.68 +0.3
407,213 + yedE NIAGMN_02305 0.68 +0.5
407,273 + yedE NIAGMN_02305 0.73 +0.7
407,326 + yedE NIAGMN_02305 0.78 -1.4
407,326 + yedE NIAGMN_02305 0.78 +0.2
407,401 + yedE NIAGMN_02305 0.84 +0.3
407,805 + -0.8
407,821 - -0.8
407,870 - -0.7
407,912 - -0.0
407,931 - +0.3
407,931 - -0.3
408,037 - yedK NIAGMN_02315 0.16 -1.6
408,186 - yedK NIAGMN_02315 0.38 +0.5
408,186 - yedK NIAGMN_02315 0.38 -0.4
408,400 + yedK NIAGMN_02315 0.70 +0.5

Or see this region's nucleotide sequence