Strain Fitness in Escherichia coli ECRC102 around NIAGMN_01095

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcelF and chbR are separated by 105 nucleotideschbR and chbA are separated by 10 nucleotideschbA and chbC are separated by 50 nucleotides NIAGMN_01085: celF - 6-phospho-beta-glucosidase, at 192,230 to 193,582 celF NIAGMN_01090: chbR - transcriptional regulator ChbR, at 193,688 to 194,527 chbR NIAGMN_01095: chbA - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 194,538 to 194,888 chbA NIAGMN_01100: chbC - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 194,939 to 196,297 chbC Position (kb) 194 195Strain fitness (log2 ratio) -1 0 1at 194.189 kb on + strand, within chbRat 194.442 kb on + strand, within chbRat 194.443 kb on - strand, within chbRat 194.889 kb on - strandat 194.984 kb on - strandat 195.169 kb on - strand, within chbCat 195.169 kb on - strand, within chbCat 195.728 kb on + strand, within chbC

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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194,189 + chbR NIAGMN_01090 0.60 -0.2
194,442 + chbR NIAGMN_01090 0.90 -0.4
194,443 - chbR NIAGMN_01090 0.90 -0.6
194,889 - -0.4
194,984 - +0.4
195,169 - chbC NIAGMN_01100 0.17 +0.1
195,169 - chbC NIAGMN_01100 0.17 +0.4
195,728 + chbC NIAGMN_01100 0.58 +0.7

Or see this region's nucleotide sequence