Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00900

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntNIAGMN_00890 and ydiQ are separated by 36 nucleotidesydiQ and ydiR are separated by 19 nucleotidesydiR and ydiS are separated by 55 nucleotides NIAGMN_00890: NIAGMN_00890 - hypothetical protein, at 154,689 to 154,865 _00890 NIAGMN_00895: ydiQ - electron transfer flavoprotein, at 154,902 to 155,666 ydiQ NIAGMN_00900: ydiR - electron transfer flavoprotein subunit alpha, at 155,686 to 156,624 ydiR NIAGMN_00905: ydiS - putative electron transfer flavoprotein-quinone oxidoreductase YdiS, at 156,680 to 157,969 ydiS Position (kb) 155 156 157Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 154.733 kb on - strand, within NIAGMN_00890at 155.146 kb on - strand, within ydiQat 155.672 kb on - strandat 155.779 kb on + strandat 155.936 kb on + strand, within ydiRat 156.064 kb on + strand, within ydiRat 156.065 kb on - strand, within ydiRat 156.156 kb on + strand, within ydiRat 156.190 kb on + strand, within ydiRat 156.190 kb on + strand, within ydiRat 156.409 kb on + strand, within ydiRat 156.412 kb on - strand, within ydiRat 156.525 kb on + strand, within ydiRat 156.988 kb on + strand, within ydiSat 157.279 kb on + strand, within ydiSat 157.516 kb on + strand, within ydiS

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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154,733 - NIAGMN_00890 0.25 -0.4
155,146 - ydiQ NIAGMN_00895 0.32 +1.1
155,672 - -0.4
155,779 + +0.1
155,936 + ydiR NIAGMN_00900 0.27 -1.2
156,064 + ydiR NIAGMN_00900 0.40 -0.7
156,065 - ydiR NIAGMN_00900 0.40 -1.7
156,156 + ydiR NIAGMN_00900 0.50 -0.8
156,190 + ydiR NIAGMN_00900 0.54 +1.8
156,190 + ydiR NIAGMN_00900 0.54 -0.7
156,409 + ydiR NIAGMN_00900 0.77 +0.4
156,412 - ydiR NIAGMN_00900 0.77 -3.3
156,525 + ydiR NIAGMN_00900 0.89 +1.1
156,988 + ydiS NIAGMN_00905 0.24 +0.4
157,279 + ydiS NIAGMN_00905 0.46 +0.5
157,516 + ydiS NIAGMN_00905 0.65 +0.4

Or see this region's nucleotide sequence