Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00870

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntuhpC and ydiB are separated by 11 nucleotidesydiB and aroD are separated by 30 nucleotidesaroD and ydiF are separated by 144 nucleotides NIAGMN_00860: uhpC - MFS transporter, at 147,795 to 149,060 uhpC NIAGMN_00865: ydiB - quinate/shikimate dehydrogenase, at 149,072 to 149,938 ydiB NIAGMN_00870: aroD - 3-dehydroquinate dehydratase, at 149,969 to 150,727 aroD NIAGMN_00875: ydiF - Acetate CoA-transferase YdiF, at 150,872 to 152,467 ydiF Position (kb) 149 150 151Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 149.783 kb on - strand, within ydiBat 149.980 kb on - strandat 150.016 kb on + strandat 150.301 kb on + strand, within aroDat 150.896 kb on - strandat 151.231 kb on - strand, within ydiFat 151.648 kb on - strand, within ydiF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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149,783 - ydiB NIAGMN_00865 0.82 +2.6
149,980 - -3.3
150,016 + -1.2
150,301 + aroD NIAGMN_00870 0.44 -2.6
150,896 - +2.3
151,231 - ydiF NIAGMN_00875 0.22 +0.9
151,648 - ydiF NIAGMN_00875 0.49 -0.1

Or see this region's nucleotide sequence