Strain Fitness in Escherichia coli ECRC102 around NIAGMN_00300

Experiment: Sodium-DL-Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntynfC and NIAGMN_00295 are separated by 71 nucleotidesNIAGMN_00295 and ynfE are separated by 198 nucleotidesynfE and ynfF are separated by 87 nucleotides NIAGMN_00290: ynfC - YnfC family lipoprotein, at 34,827 to 35,573 ynfC NIAGMN_00295: NIAGMN_00295 - DUF1161 domain-containing protein, at 35,645 to 35,950 _00295 NIAGMN_00300: ynfE - Putative dimethyl sulfoxide reductase chain YnfE, at 36,149 to 38,575 ynfE NIAGMN_00305: ynfF - putative dimethyl sulfoxide reductase chain YnfF, at 38,663 to 41,059 ynfF Position (kb) 36 37 38 39Strain fitness (log2 ratio) -2 -1 0 1 2 3at 35.380 kb on - strand, within ynfCat 35.951 kb on + strandat 35.952 kb on - strandat 36.020 kb on + strandat 36.021 kb on - strandat 36.352 kb on - strandat 36.364 kb on + strandat 36.615 kb on - strand, within ynfEat 36.770 kb on + strand, within ynfEat 36.778 kb on + strand, within ynfEat 37.127 kb on + strand, within ynfEat 37.127 kb on + strand, within ynfEat 37.262 kb on - strand, within ynfEat 37.391 kb on + strand, within ynfEat 37.393 kb on + strand, within ynfEat 37.405 kb on - strand, within ynfEat 37.746 kb on - strand, within ynfEat 37.913 kb on + strand, within ynfEat 38.054 kb on - strand, within ynfEat 38.357 kb on + strandat 38.357 kb on + strandat 38.358 kb on - strandat 38.683 kb on + strandat 39.249 kb on - strand, within ynfFat 39.250 kb on + strand, within ynfFat 39.251 kb on - strand, within ynfFat 39.251 kb on - strand, within ynfFat 39.322 kb on + strand, within ynfFat 39.362 kb on + strand, within ynfF

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Per-strain Table

Position Strand Gene LocusTag Fraction Sodium-DL-Lactate
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35,380 - ynfC NIAGMN_00290 0.74 -0.7
35,951 + -1.4
35,952 - -0.5
36,020 + +0.1
36,021 - +0.3
36,352 - -1.5
36,364 + +0.4
36,615 - ynfE NIAGMN_00300 0.19 -1.7
36,770 + ynfE NIAGMN_00300 0.26 +0.2
36,778 + ynfE NIAGMN_00300 0.26 +0.7
37,127 + ynfE NIAGMN_00300 0.40 -0.2
37,127 + ynfE NIAGMN_00300 0.40 -0.3
37,262 - ynfE NIAGMN_00300 0.46 -0.2
37,391 + ynfE NIAGMN_00300 0.51 -0.3
37,393 + ynfE NIAGMN_00300 0.51 -2.3
37,405 - ynfE NIAGMN_00300 0.52 -1.3
37,746 - ynfE NIAGMN_00300 0.66 +1.1
37,913 + ynfE NIAGMN_00300 0.73 +3.0
38,054 - ynfE NIAGMN_00300 0.78 +1.0
38,357 + +1.8
38,357 + +1.0
38,358 - +0.9
38,683 + +0.1
39,249 - ynfF NIAGMN_00305 0.24 -0.3
39,250 + ynfF NIAGMN_00305 0.24 +0.9
39,251 - ynfF NIAGMN_00305 0.25 +1.1
39,251 - ynfF NIAGMN_00305 0.25 +0.4
39,322 + ynfF NIAGMN_00305 0.27 -0.9
39,362 + ynfF NIAGMN_00305 0.29 +0.8

Or see this region's nucleotide sequence