Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18230 and LRK53_RS18235 are separated by 311 nucleotides LRK53_RS18235 and LRK53_RS18240 are separated by 120 nucleotides
LRK53_RS18230: LRK53_RS18230 - sel1 repeat family protein, at 22,514 to 23,089
_RS18230
LRK53_RS18235: LRK53_RS18235 - complement resistance protein TraT, at 23,401 to 24,141
_RS18235
LRK53_RS18240: LRK53_RS18240 - AAA-like domain-containing protein, at 24,262 to 25,377
_RS18240
Position (kb) 23
24
25 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 22.453 kb on + strand at 22.453 kb on + strand at 22.453 kb on + strand at 22.453 kb on + strand at 22.453 kb on + strand at 22.454 kb on - strand at 22.454 kb on - strand at 22.454 kb on - strand at 22.455 kb on + strand at 22.455 kb on + strand at 22.456 kb on - strand at 22.456 kb on - strand at 22.594 kb on + strand, within LRK53_RS18230 at 22.617 kb on + strand, within LRK53_RS18230 at 22.617 kb on + strand, within LRK53_RS18230 at 22.618 kb on - strand, within LRK53_RS18230 at 22.618 kb on - strand, within LRK53_RS18230 at 22.756 kb on - strand, within LRK53_RS18230 at 22.856 kb on + strand, within LRK53_RS18230 at 22.856 kb on + strand, within LRK53_RS18230 at 22.856 kb on + strand, within LRK53_RS18230 at 22.856 kb on + strand, within LRK53_RS18230 at 22.856 kb on + strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.857 kb on - strand, within LRK53_RS18230 at 22.962 kb on + strand, within LRK53_RS18230 at 22.962 kb on + strand, within LRK53_RS18230 at 22.963 kb on - strand, within LRK53_RS18230 at 22.963 kb on - strand, within LRK53_RS18230 at 22.963 kb on - strand, within LRK53_RS18230 at 22.963 kb on - strand, within LRK53_RS18230 at 22.963 kb on - strand, within LRK53_RS18230 at 22.963 kb on - strand, within LRK53_RS18230 at 22.970 kb on + strand, within LRK53_RS18230 at 23.018 kb on + strand, within LRK53_RS18230 at 23.018 kb on + strand, within LRK53_RS18230 at 23.019 kb on - strand, within LRK53_RS18230 at 23.019 kb on - strand, within LRK53_RS18230 at 23.088 kb on - strand at 23.338 kb on + strand at 23.338 kb on + strand at 23.339 kb on - strand at 23.339 kb on - strand at 23.339 kb on - strand at 23.451 kb on + strand at 23.451 kb on + strand at 23.452 kb on - strand at 23.563 kb on + strand, within LRK53_RS18235 at 23.563 kb on + strand, within LRK53_RS18235 at 23.563 kb on + strand, within LRK53_RS18235 at 23.563 kb on + strand, within LRK53_RS18235 at 23.563 kb on + strand, within LRK53_RS18235 at 23.563 kb on + strand, within LRK53_RS18235 at 23.564 kb on - strand, within LRK53_RS18235 at 23.896 kb on + strand, within LRK53_RS18235 at 23.896 kb on + strand, within LRK53_RS18235 at 23.896 kb on + strand, within LRK53_RS18235 at 23.896 kb on + strand, within LRK53_RS18235 at 23.896 kb on + strand, within LRK53_RS18235 at 23.897 kb on - strand, within LRK53_RS18235 at 23.899 kb on + strand, within LRK53_RS18235 at 23.900 kb on - strand, within LRK53_RS18235 at 23.900 kb on - strand, within LRK53_RS18235 at 23.943 kb on + strand, within LRK53_RS18235 at 23.943 kb on + strand, within LRK53_RS18235 at 23.943 kb on + strand, within LRK53_RS18235 at 23.944 kb on - strand, within LRK53_RS18235 at 23.944 kb on - strand, within LRK53_RS18235 at 23.944 kb on - strand, within LRK53_RS18235 at 23.944 kb on - strand, within LRK53_RS18235 at 24.008 kb on - strand, within LRK53_RS18235 at 24.008 kb on - strand, within LRK53_RS18235 at 24.075 kb on + strand at 24.075 kb on + strand at 24.075 kb on + strand at 24.075 kb on + strand at 24.076 kb on - strand at 24.076 kb on - strand at 24.076 kb on - strand at 24.139 kb on + strand at 24.139 kb on + strand at 24.140 kb on - strand at 24.140 kb on - strand at 24.140 kb on - strand at 24.204 kb on + strand at 24.204 kb on + strand at 24.204 kb on + strand at 24.214 kb on + strand at 24.214 kb on + strand at 24.226 kb on + strand at 24.228 kb on + strand at 24.247 kb on + strand at 24.248 kb on - strand at 24.257 kb on - strand at 24.257 kb on - strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.261 kb on + strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.262 kb on - strand at 24.283 kb on + strand at 24.283 kb on + strand at 24.283 kb on + strand at 24.283 kb on + strand at 24.283 kb on + strand at 24.283 kb on + strand at 24.283 kb on + strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.284 kb on - strand at 24.326 kb on - strand at 24.326 kb on - strand at 24.326 kb on - strand at 24.412 kb on + strand, within LRK53_RS18240 at 24.412 kb on + strand, within LRK53_RS18240 at 24.412 kb on + strand, within LRK53_RS18240 at 24.413 kb on - strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.445 kb on + strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.446 kb on - strand, within LRK53_RS18240 at 24.619 kb on + strand, within LRK53_RS18240 at 24.619 kb on + strand, within LRK53_RS18240 at 24.619 kb on + strand, within LRK53_RS18240 at 24.619 kb on + strand, within LRK53_RS18240 at 24.619 kb on + strand, within LRK53_RS18240 at 24.620 kb on - strand, within LRK53_RS18240 at 24.681 kb on + strand, within LRK53_RS18240 at 24.681 kb on + strand, within LRK53_RS18240 at 24.682 kb on - strand, within LRK53_RS18240 at 24.698 kb on + strand, within LRK53_RS18240 at 24.699 kb on - strand, within LRK53_RS18240 at 24.722 kb on + strand, within LRK53_RS18240 at 24.722 kb on + strand, within LRK53_RS18240 at 24.722 kb on + strand, within LRK53_RS18240 at 24.723 kb on - strand, within LRK53_RS18240 at 24.723 kb on - strand, within LRK53_RS18240 at 24.723 kb on - strand, within LRK53_RS18240 at 24.799 kb on + strand, within LRK53_RS18240 at 24.799 kb on + strand, within LRK53_RS18240 at 24.799 kb on + strand, within LRK53_RS18240 at 24.799 kb on + strand, within LRK53_RS18240 at 24.799 kb on + strand, within LRK53_RS18240 at 24.799 kb on + strand, within LRK53_RS18240 at 24.800 kb on - strand, within LRK53_RS18240 at 24.800 kb on - strand, within LRK53_RS18240 at 24.824 kb on + strand, within LRK53_RS18240 at 24.824 kb on + strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 24.825 kb on - strand, within LRK53_RS18240 at 25.006 kb on + strand, within LRK53_RS18240 at 25.006 kb on + strand, within LRK53_RS18240 at 25.007 kb on - strand, within LRK53_RS18240 at 25.007 kb on - strand, within LRK53_RS18240 at 25.007 kb on - strand, within LRK53_RS18240 at 25.105 kb on + strand, within LRK53_RS18240 at 25.105 kb on + strand, within LRK53_RS18240 at 25.105 kb on + strand, within LRK53_RS18240 at 25.105 kb on + strand, within LRK53_RS18240 at 25.105 kb on + strand, within LRK53_RS18240 at 25.105 kb on + strand, within LRK53_RS18240 at 25.106 kb on - strand, within LRK53_RS18240 at 25.106 kb on - strand, within LRK53_RS18240 at 25.106 kb on - strand, within LRK53_RS18240 at 25.106 kb on - strand, within LRK53_RS18240 at 25.106 kb on - strand, within LRK53_RS18240 at 25.106 kb on - strand, within LRK53_RS18240
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 22,453 + -1.4 22,453 + -0.9 22,453 + +0.3 22,453 + -1.4 22,453 + -0.7 22,454 - -2.0 22,454 - -1.8 22,454 - -2.0 22,455 + -0.0 22,455 + -0.1 22,456 - +0.7 22,456 - -0.1 22,594 + LRK53_RS18230 0.14 -1.3 22,617 + LRK53_RS18230 0.18 -1.4 22,617 + LRK53_RS18230 0.18 -0.4 22,618 - LRK53_RS18230 0.18 +1.3 22,618 - LRK53_RS18230 0.18 -0.4 22,756 - LRK53_RS18230 0.42 +2.0 22,856 + LRK53_RS18230 0.59 -1.0 22,856 + LRK53_RS18230 0.59 -2.2 22,856 + LRK53_RS18230 0.59 +0.9 22,856 + LRK53_RS18230 0.59 -2.6 22,856 + LRK53_RS18230 0.59 -1.2 22,857 - LRK53_RS18230 0.60 -0.8 22,857 - LRK53_RS18230 0.60 -1.1 22,857 - LRK53_RS18230 0.60 -0.2 22,857 - LRK53_RS18230 0.60 -1.9 22,857 - LRK53_RS18230 0.60 +1.1 22,857 - LRK53_RS18230 0.60 +0.8 22,857 - LRK53_RS18230 0.60 -0.4 22,857 - LRK53_RS18230 0.60 +0.6 22,857 - LRK53_RS18230 0.60 +0.9 22,962 + LRK53_RS18230 0.78 -1.0 22,962 + LRK53_RS18230 0.78 -0.5 22,963 - LRK53_RS18230 0.78 +0.8 22,963 - LRK53_RS18230 0.78 -0.9 22,963 - LRK53_RS18230 0.78 +0.1 22,963 - LRK53_RS18230 0.78 +1.4 22,963 - LRK53_RS18230 0.78 -0.5 22,963 - LRK53_RS18230 0.78 +1.2 22,970 + LRK53_RS18230 0.79 -1.6 23,018 + LRK53_RS18230 0.88 -2.0 23,018 + LRK53_RS18230 0.88 -0.6 23,019 - LRK53_RS18230 0.88 -1.7 23,019 - LRK53_RS18230 0.88 +1.1 23,088 - -0.5 23,338 + -1.7 23,338 + +0.0 23,339 - +1.3 23,339 - -1.2 23,339 - -0.1 23,451 + +0.8 23,451 + +0.6 23,452 - +0.7 23,563 + LRK53_RS18235 0.22 -1.1 23,563 + LRK53_RS18235 0.22 +1.6 23,563 + LRK53_RS18235 0.22 +0.3 23,563 + LRK53_RS18235 0.22 +0.5 23,563 + LRK53_RS18235 0.22 -0.8 23,563 + LRK53_RS18235 0.22 -0.7 23,564 - LRK53_RS18235 0.22 -0.9 23,896 + LRK53_RS18235 0.67 -1.5 23,896 + LRK53_RS18235 0.67 -0.2 23,896 + LRK53_RS18235 0.67 -0.1 23,896 + LRK53_RS18235 0.67 +0.3 23,896 + LRK53_RS18235 0.67 +0.9 23,897 - LRK53_RS18235 0.67 -0.3 23,899 + LRK53_RS18235 0.67 +0.8 23,900 - LRK53_RS18235 0.67 -0.4 23,900 - LRK53_RS18235 0.67 +0.5 23,943 + LRK53_RS18235 0.73 +1.1 23,943 + LRK53_RS18235 0.73 -1.2 23,943 + LRK53_RS18235 0.73 -0.3 23,944 - LRK53_RS18235 0.73 +0.5 23,944 - LRK53_RS18235 0.73 +0.8 23,944 - LRK53_RS18235 0.73 -0.2 23,944 - LRK53_RS18235 0.73 -0.5 24,008 - LRK53_RS18235 0.82 +0.6 24,008 - LRK53_RS18235 0.82 +1.7 24,075 + +0.1 24,075 + -1.7 24,075 + -1.1 24,075 + -0.5 24,076 - -0.5 24,076 - -0.7 24,076 - -0.6 24,139 + -1.5 24,139 + -0.9 24,140 - -0.9 24,140 - +1.6 24,140 - -0.5 24,204 + -1.4 24,204 + -0.4 24,204 + -0.3 24,214 + +0.1 24,214 + +1.5 24,226 + -1.1 24,228 + +0.1 24,247 + -0.5 24,248 - +0.1 24,257 - -0.9 24,257 - +1.4 24,261 + -0.9 24,261 + -0.5 24,261 + -1.5 24,261 + -1.5 24,261 + +0.5 24,261 + +0.5 24,261 + +1.2 24,261 + -0.7 24,261 + -1.7 24,261 + +0.2 24,261 + +1.3 24,262 - +0.2 24,262 - -0.2 24,262 - +2.7 24,262 - -0.6 24,262 - +0.4 24,262 - -1.8 24,262 - +0.4 24,283 + -2.3 24,283 + -1.6 24,283 + -2.1 24,283 + -0.2 24,283 + +1.3 24,283 + +1.5 24,283 + -0.0 24,284 - -2.4 24,284 - -0.5 24,284 - -0.9 24,284 - +0.7 24,284 - +0.5 24,284 - +0.0 24,284 - -1.5 24,284 - +1.9 24,284 - +0.1 24,284 - -0.7 24,284 - -2.6 24,284 - -0.4 24,326 - +0.7 24,326 - -0.2 24,326 - -1.8 24,412 + LRK53_RS18240 0.13 +0.7 24,412 + LRK53_RS18240 0.13 -1.8 24,412 + LRK53_RS18240 0.13 +1.6 24,413 - LRK53_RS18240 0.14 -0.8 24,445 + LRK53_RS18240 0.16 +1.3 24,445 + LRK53_RS18240 0.16 -0.6 24,445 + LRK53_RS18240 0.16 +2.1 24,445 + LRK53_RS18240 0.16 +1.1 24,445 + LRK53_RS18240 0.16 -0.1 24,445 + LRK53_RS18240 0.16 -1.2 24,445 + LRK53_RS18240 0.16 -0.6 24,445 + LRK53_RS18240 0.16 +0.3 24,445 + LRK53_RS18240 0.16 -2.2 24,445 + LRK53_RS18240 0.16 -0.4 24,445 + LRK53_RS18240 0.16 -1.2 24,445 + LRK53_RS18240 0.16 -0.2 24,445 + LRK53_RS18240 0.16 -0.7 24,445 + LRK53_RS18240 0.16 +0.2 24,445 + LRK53_RS18240 0.16 -0.7 24,445 + LRK53_RS18240 0.16 +0.3 24,446 - LRK53_RS18240 0.16 -1.2 24,446 - LRK53_RS18240 0.16 +0.2 24,446 - LRK53_RS18240 0.16 +0.7 24,446 - LRK53_RS18240 0.16 +0.1 24,446 - LRK53_RS18240 0.16 -0.5 24,446 - LRK53_RS18240 0.16 -1.2 24,446 - LRK53_RS18240 0.16 -1.2 24,446 - LRK53_RS18240 0.16 +0.3 24,446 - LRK53_RS18240 0.16 +0.8 24,446 - LRK53_RS18240 0.16 -2.7 24,446 - LRK53_RS18240 0.16 +0.1 24,446 - LRK53_RS18240 0.16 -0.3 24,446 - LRK53_RS18240 0.16 -1.6 24,619 + LRK53_RS18240 0.32 +1.4 24,619 + LRK53_RS18240 0.32 -0.4 24,619 + LRK53_RS18240 0.32 -0.9 24,619 + LRK53_RS18240 0.32 -1.7 24,619 + LRK53_RS18240 0.32 -0.5 24,620 - LRK53_RS18240 0.32 +1.1 24,681 + LRK53_RS18240 0.38 -1.9 24,681 + LRK53_RS18240 0.38 -0.2 24,682 - LRK53_RS18240 0.38 +0.4 24,698 + LRK53_RS18240 0.39 +0.2 24,699 - LRK53_RS18240 0.39 +2.3 24,722 + LRK53_RS18240 0.41 +0.6 24,722 + LRK53_RS18240 0.41 -0.2 24,722 + LRK53_RS18240 0.41 -0.0 24,723 - LRK53_RS18240 0.41 -0.5 24,723 - LRK53_RS18240 0.41 -0.0 24,723 - LRK53_RS18240 0.41 +0.1 24,799 + LRK53_RS18240 0.48 -0.2 24,799 + LRK53_RS18240 0.48 -1.2 24,799 + LRK53_RS18240 0.48 +1.1 24,799 + LRK53_RS18240 0.48 -0.3 24,799 + LRK53_RS18240 0.48 -0.7 24,799 + LRK53_RS18240 0.48 -0.3 24,800 - LRK53_RS18240 0.48 -0.7 24,800 - LRK53_RS18240 0.48 -0.1 24,824 + LRK53_RS18240 0.50 -2.0 24,824 + LRK53_RS18240 0.50 -1.8 24,825 - LRK53_RS18240 0.50 -3.5 24,825 - LRK53_RS18240 0.50 -1.1 24,825 - LRK53_RS18240 0.50 -1.1 24,825 - LRK53_RS18240 0.50 +0.7 24,825 - LRK53_RS18240 0.50 +0.5 24,825 - LRK53_RS18240 0.50 -0.1 24,825 - LRK53_RS18240 0.50 +2.5 25,006 + LRK53_RS18240 0.67 +1.4 25,006 + LRK53_RS18240 0.67 -0.8 25,007 - LRK53_RS18240 0.67 +0.2 25,007 - LRK53_RS18240 0.67 +2.3 25,007 - LRK53_RS18240 0.67 -0.7 25,105 + LRK53_RS18240 0.76 -1.0 25,105 + LRK53_RS18240 0.76 -1.0 25,105 + LRK53_RS18240 0.76 -1.9 25,105 + LRK53_RS18240 0.76 -0.2 25,105 + LRK53_RS18240 0.76 -1.2 25,105 + LRK53_RS18240 0.76 +0.7 25,106 - LRK53_RS18240 0.76 -1.4 25,106 - LRK53_RS18240 0.76 +0.2 25,106 - LRK53_RS18240 0.76 -0.8 25,106 - LRK53_RS18240 0.76 +0.5 25,106 - LRK53_RS18240 0.76 -0.2 25,106 - LRK53_RS18240 0.76 -1.2
Or see this region's nucleotide sequence