Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS18160 and LRK53_RS18165 are separated by 15 nucleotides LRK53_RS18165 and LRK53_RS18170 overlap by 11 nucleotides LRK53_RS18170 and LRK53_RS18175 are separated by 81 nucleotides
LRK53_RS18160: LRK53_RS18160 - thermonuclease family protein, at 6,758 to 7,480
_RS18160
LRK53_RS18165: LRK53_RS18165 - hypothetical protein, at 7,496 to 8,482
_RS18165
LRK53_RS18170: LRK53_RS18170 - HAMP domain-containing histidine kinase, at 8,472 to 9,839
_RS18170
LRK53_RS18175: LRK53_RS18175 - DEAD/DEAH box helicase, at 9,921 to 13,061
_RS18175
Position (kb)
8
9
10 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 7.497 kb on + strand at 7.497 kb on + strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.498 kb on - strand at 7.499 kb on + strand at 7.500 kb on - strand at 7.500 kb on - strand at 7.500 kb on - strand at 7.587 kb on + strand at 7.587 kb on + strand at 7.633 kb on - strand, within LRK53_RS18165 at 7.846 kb on - strand, within LRK53_RS18165 at 8.644 kb on + strand, within LRK53_RS18170 at 9.219 kb on + strand, within LRK53_RS18170 at 9.220 kb on - strand, within LRK53_RS18170 at 9.220 kb on - strand, within LRK53_RS18170 at 9.292 kb on - strand, within LRK53_RS18170 at 9.494 kb on - strand, within LRK53_RS18170 at 9.494 kb on - strand, within LRK53_RS18170 at 9.539 kb on - strand, within LRK53_RS18170 at 9.621 kb on + strand, within LRK53_RS18170 at 9.621 kb on + strand, within LRK53_RS18170 at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.833 kb on + strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 9.834 kb on - strand at 10.161 kb on - strand at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.449 kb on + strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175 at 10.450 kb on - strand, within LRK53_RS18175
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 7,497 + -2.2 7,497 + +0.1 7,498 - +0.1 7,498 - -0.2 7,498 - -0.7 7,498 - -0.7 7,498 - -0.5 7,498 - -1.2 7,498 - -1.1 7,498 - +0.9 7,499 + -1.4 7,500 - +0.3 7,500 - +0.5 7,500 - -0.5 7,587 + -0.9 7,587 + -0.5 7,633 - LRK53_RS18165 0.14 -1.4 7,846 - LRK53_RS18165 0.35 -1.2 8,644 + LRK53_RS18170 0.13 -1.1 9,219 + LRK53_RS18170 0.55 -0.4 9,220 - LRK53_RS18170 0.55 -0.8 9,220 - LRK53_RS18170 0.55 +0.3 9,292 - LRK53_RS18170 0.60 -1.9 9,494 - LRK53_RS18170 0.75 +0.9 9,494 - LRK53_RS18170 0.75 -2.0 9,539 - LRK53_RS18170 0.78 -0.7 9,621 + LRK53_RS18170 0.84 -1.9 9,621 + LRK53_RS18170 0.84 -0.2 9,833 + +1.2 9,833 + +2.3 9,833 + +0.3 9,833 + -1.2 9,833 + -0.2 9,833 + -0.9 9,833 + +0.6 9,833 + +1.1 9,833 + +1.7 9,833 + -0.7 9,833 + -0.2 9,833 + -0.6 9,833 + +0.3 9,833 + +1.1 9,833 + -1.2 9,833 + -0.2 9,834 - -2.1 9,834 - -0.5 9,834 - -0.7 9,834 - -1.8 9,834 - -1.5 9,834 - -0.2 9,834 - +0.4 9,834 - -0.4 9,834 - -0.2 9,834 - -1.1 9,834 - -0.9 9,834 - +1.3 9,834 - -0.7 9,834 - +0.3 9,834 - +0.1 9,834 - -1.0 9,834 - +0.8 9,834 - +0.8 10,161 - +0.2 10,449 + LRK53_RS18175 0.17 -1.3 10,449 + LRK53_RS18175 0.17 +0.8 10,449 + LRK53_RS18175 0.17 +0.8 10,449 + LRK53_RS18175 0.17 +3.1 10,449 + LRK53_RS18175 0.17 -2.0 10,449 + LRK53_RS18175 0.17 -1.1 10,449 + LRK53_RS18175 0.17 +0.5 10,449 + LRK53_RS18175 0.17 +0.5 10,449 + LRK53_RS18175 0.17 +0.2 10,450 - LRK53_RS18175 0.17 -1.4 10,450 - LRK53_RS18175 0.17 -1.9 10,450 - LRK53_RS18175 0.17 -1.4 10,450 - LRK53_RS18175 0.17 +1.1 10,450 - LRK53_RS18175 0.17 -0.2 10,450 - LRK53_RS18175 0.17 -1.1 10,450 - LRK53_RS18175 0.17 +0.7
Or see this region's nucleotide sequence