Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS18170

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS18160 and LRK53_RS18165 are separated by 15 nucleotidesLRK53_RS18165 and LRK53_RS18170 overlap by 11 nucleotidesLRK53_RS18170 and LRK53_RS18175 are separated by 81 nucleotides LRK53_RS18160: LRK53_RS18160 - thermonuclease family protein, at 6,758 to 7,480 _RS18160 LRK53_RS18165: LRK53_RS18165 - hypothetical protein, at 7,496 to 8,482 _RS18165 LRK53_RS18170: LRK53_RS18170 - HAMP domain-containing histidine kinase, at 8,472 to 9,839 _RS18170 LRK53_RS18175: LRK53_RS18175 - DEAD/DEAH box helicase, at 9,921 to 13,061 _RS18175 Position (kb) 8 9 10Strain fitness (log2 ratio) -2 -1 0 1 2 3at 7.497 kb on + strandat 7.497 kb on + strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.498 kb on - strandat 7.499 kb on + strandat 7.500 kb on - strandat 7.500 kb on - strandat 7.500 kb on - strandat 7.587 kb on + strandat 7.587 kb on + strandat 7.633 kb on - strand, within LRK53_RS18165at 7.846 kb on - strand, within LRK53_RS18165at 8.644 kb on + strand, within LRK53_RS18170at 9.219 kb on + strand, within LRK53_RS18170at 9.220 kb on - strand, within LRK53_RS18170at 9.220 kb on - strand, within LRK53_RS18170at 9.292 kb on - strand, within LRK53_RS18170at 9.494 kb on - strand, within LRK53_RS18170at 9.494 kb on - strand, within LRK53_RS18170at 9.539 kb on - strand, within LRK53_RS18170at 9.621 kb on + strand, within LRK53_RS18170at 9.621 kb on + strand, within LRK53_RS18170at 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.833 kb on + strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 9.834 kb on - strandat 10.161 kb on - strandat 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.449 kb on + strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175at 10.450 kb on - strand, within LRK53_RS18175

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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7,497 + -2.2
7,497 + +0.1
7,498 - +0.1
7,498 - -0.2
7,498 - -0.7
7,498 - -0.7
7,498 - -0.5
7,498 - -1.2
7,498 - -1.1
7,498 - +0.9
7,499 + -1.4
7,500 - +0.3
7,500 - +0.5
7,500 - -0.5
7,587 + -0.9
7,587 + -0.5
7,633 - LRK53_RS18165 0.14 -1.4
7,846 - LRK53_RS18165 0.35 -1.2
8,644 + LRK53_RS18170 0.13 -1.1
9,219 + LRK53_RS18170 0.55 -0.4
9,220 - LRK53_RS18170 0.55 -0.8
9,220 - LRK53_RS18170 0.55 +0.3
9,292 - LRK53_RS18170 0.60 -1.9
9,494 - LRK53_RS18170 0.75 +0.9
9,494 - LRK53_RS18170 0.75 -2.0
9,539 - LRK53_RS18170 0.78 -0.7
9,621 + LRK53_RS18170 0.84 -1.9
9,621 + LRK53_RS18170 0.84 -0.2
9,833 + +1.2
9,833 + +2.3
9,833 + +0.3
9,833 + -1.2
9,833 + -0.2
9,833 + -0.9
9,833 + +0.6
9,833 + +1.1
9,833 + +1.7
9,833 + -0.7
9,833 + -0.2
9,833 + -0.6
9,833 + +0.3
9,833 + +1.1
9,833 + -1.2
9,833 + -0.2
9,834 - -2.1
9,834 - -0.5
9,834 - -0.7
9,834 - -1.8
9,834 - -1.5
9,834 - -0.2
9,834 - +0.4
9,834 - -0.4
9,834 - -0.2
9,834 - -1.1
9,834 - -0.9
9,834 - +1.3
9,834 - -0.7
9,834 - +0.3
9,834 - +0.1
9,834 - -1.0
9,834 - +0.8
9,834 - +0.8
10,161 - +0.2
10,449 + LRK53_RS18175 0.17 -1.3
10,449 + LRK53_RS18175 0.17 +0.8
10,449 + LRK53_RS18175 0.17 +0.8
10,449 + LRK53_RS18175 0.17 +3.1
10,449 + LRK53_RS18175 0.17 -2.0
10,449 + LRK53_RS18175 0.17 -1.1
10,449 + LRK53_RS18175 0.17 +0.5
10,449 + LRK53_RS18175 0.17 +0.5
10,449 + LRK53_RS18175 0.17 +0.2
10,450 - LRK53_RS18175 0.17 -1.4
10,450 - LRK53_RS18175 0.17 -1.9
10,450 - LRK53_RS18175 0.17 -1.4
10,450 - LRK53_RS18175 0.17 +1.1
10,450 - LRK53_RS18175 0.17 -0.2
10,450 - LRK53_RS18175 0.17 -1.1
10,450 - LRK53_RS18175 0.17 +0.7

Or see this region's nucleotide sequence