Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS16660 and LRK53_RS16665 overlap by 4 nucleotides LRK53_RS16665 and LRK53_RS16670 overlap by 8 nucleotides LRK53_RS16670 and LRK53_RS16675 overlap by 4 nucleotides LRK53_RS16675 and LRK53_RS16680 overlap by 4 nucleotides
LRK53_RS16660: LRK53_RS16660 - tetratricopeptide repeat protein, at 3,665,288 to 3,667,174
_RS16660
LRK53_RS16665: LRK53_RS16665 - VWA domain-containing protein, at 3,667,171 to 3,668,160
_RS16665
LRK53_RS16670: LRK53_RS16670 - DUF4381 family protein, at 3,668,153 to 3,668,674
_RS16670
LRK53_RS16675: LRK53_RS16675 - DUF58 domain-containing protein, at 3,668,671 to 3,669,606
_RS16675
LRK53_RS16680: LRK53_RS16680 - MoxR family ATPase, at 3,669,603 to 3,670,598
_RS16680
Position (kb)
3668
3669 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3667.328 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.493 kb on + strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.494 kb on - strand, within LRK53_RS16665 at 3667.715 kb on + strand, within LRK53_RS16665 at 3667.715 kb on + strand, within LRK53_RS16665 at 3667.715 kb on + strand, within LRK53_RS16665 at 3667.715 kb on + strand, within LRK53_RS16665 at 3667.715 kb on + strand, within LRK53_RS16665 at 3667.715 kb on + strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3667.716 kb on - strand, within LRK53_RS16665 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.271 kb on + strand, within LRK53_RS16670 at 3668.272 kb on - strand, within LRK53_RS16670 at 3668.272 kb on - strand, within LRK53_RS16670 at 3668.272 kb on - strand, within LRK53_RS16670 at 3668.272 kb on - strand, within LRK53_RS16670 at 3668.272 kb on - strand, within LRK53_RS16670 at 3668.272 kb on - strand, within LRK53_RS16670 at 3668.536 kb on + strand, within LRK53_RS16670 at 3668.564 kb on + strand, within LRK53_RS16670 at 3668.564 kb on + strand, within LRK53_RS16670 at 3668.565 kb on - strand, within LRK53_RS16670 at 3668.565 kb on - strand, within LRK53_RS16670 at 3669.416 kb on + strand, within LRK53_RS16675 at 3669.434 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.452 kb on + strand, within LRK53_RS16675 at 3669.453 kb on - strand, within LRK53_RS16675
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 3,667,328 + LRK53_RS16665 0.16 -2.9 3,667,493 + LRK53_RS16665 0.33 +0.6 3,667,493 + LRK53_RS16665 0.33 +0.2 3,667,493 + LRK53_RS16665 0.33 +1.1 3,667,493 + LRK53_RS16665 0.33 -0.9 3,667,493 + LRK53_RS16665 0.33 -0.7 3,667,493 + LRK53_RS16665 0.33 -0.5 3,667,493 + LRK53_RS16665 0.33 -1.1 3,667,494 - LRK53_RS16665 0.33 -1.7 3,667,494 - LRK53_RS16665 0.33 -0.3 3,667,494 - LRK53_RS16665 0.33 -1.0 3,667,494 - LRK53_RS16665 0.33 -0.2 3,667,494 - LRK53_RS16665 0.33 -1.3 3,667,494 - LRK53_RS16665 0.33 -1.7 3,667,494 - LRK53_RS16665 0.33 -1.0 3,667,494 - LRK53_RS16665 0.33 -0.6 3,667,494 - LRK53_RS16665 0.33 +0.3 3,667,494 - LRK53_RS16665 0.33 -1.2 3,667,494 - LRK53_RS16665 0.33 +1.2 3,667,494 - LRK53_RS16665 0.33 -1.4 3,667,715 + LRK53_RS16665 0.55 +0.6 3,667,715 + LRK53_RS16665 0.55 -1.5 3,667,715 + LRK53_RS16665 0.55 -1.2 3,667,715 + LRK53_RS16665 0.55 -1.1 3,667,715 + LRK53_RS16665 0.55 -0.5 3,667,715 + LRK53_RS16665 0.55 -0.8 3,667,716 - LRK53_RS16665 0.55 -2.2 3,667,716 - LRK53_RS16665 0.55 +0.1 3,667,716 - LRK53_RS16665 0.55 -0.6 3,667,716 - LRK53_RS16665 0.55 +1.2 3,667,716 - LRK53_RS16665 0.55 +0.3 3,667,716 - LRK53_RS16665 0.55 -0.1 3,667,716 - LRK53_RS16665 0.55 -1.7 3,667,716 - LRK53_RS16665 0.55 +0.5 3,667,716 - LRK53_RS16665 0.55 -1.5 3,667,716 - LRK53_RS16665 0.55 -1.3 3,668,271 + LRK53_RS16670 0.23 -1.7 3,668,271 + LRK53_RS16670 0.23 -1.8 3,668,271 + LRK53_RS16670 0.23 -0.5 3,668,271 + LRK53_RS16670 0.23 -0.7 3,668,271 + LRK53_RS16670 0.23 -1.6 3,668,271 + LRK53_RS16670 0.23 -1.0 3,668,271 + LRK53_RS16670 0.23 -0.9 3,668,271 + LRK53_RS16670 0.23 -1.0 3,668,272 - LRK53_RS16670 0.23 -1.6 3,668,272 - LRK53_RS16670 0.23 +0.7 3,668,272 - LRK53_RS16670 0.23 -0.7 3,668,272 - LRK53_RS16670 0.23 -1.7 3,668,272 - LRK53_RS16670 0.23 -0.7 3,668,272 - LRK53_RS16670 0.23 -1.1 3,668,536 + LRK53_RS16670 0.73 +0.1 3,668,564 + LRK53_RS16670 0.79 -1.4 3,668,564 + LRK53_RS16670 0.79 -0.3 3,668,565 - LRK53_RS16670 0.79 -1.5 3,668,565 - LRK53_RS16670 0.79 -0.4 3,669,416 + LRK53_RS16675 0.80 +1.5 3,669,434 + LRK53_RS16675 0.82 -0.8 3,669,452 + LRK53_RS16675 0.83 -2.0 3,669,452 + LRK53_RS16675 0.83 -0.7 3,669,452 + LRK53_RS16675 0.83 -1.4 3,669,452 + LRK53_RS16675 0.83 -1.3 3,669,452 + LRK53_RS16675 0.83 +0.9 3,669,452 + LRK53_RS16675 0.83 +0.5 3,669,452 + LRK53_RS16675 0.83 -1.1 3,669,452 + LRK53_RS16675 0.83 -1.2 3,669,453 - LRK53_RS16675 0.84 -0.3
Or see this region's nucleotide sequence