Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15980 and LRK53_RS15985 are separated by 41 nucleotides LRK53_RS15985 and LRK53_RS15990 are separated by 443 nucleotides
LRK53_RS15980: LRK53_RS15980 - hypothetical protein, at 3,508,137 to 3,510,092
_RS15980
LRK53_RS15985: LRK53_RS15985 - hypothetical protein, at 3,510,134 to 3,510,985
_RS15985
LRK53_RS15990: LRK53_RS15990 - elongation factor G, at 3,511,429 to 3,513,468
_RS15990
Position (kb)
3510
3511 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3509.992 kb on + strand at 3509.992 kb on + strand at 3509.992 kb on + strand at 3509.993 kb on - strand at 3509.993 kb on - strand at 3509.993 kb on - strand at 3509.993 kb on - strand at 3510.104 kb on - strand at 3510.104 kb on - strand at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.240 kb on + strand, within LRK53_RS15985 at 3510.241 kb on - strand, within LRK53_RS15985 at 3510.241 kb on - strand, within LRK53_RS15985 at 3510.241 kb on - strand, within LRK53_RS15985 at 3510.241 kb on - strand, within LRK53_RS15985 at 3510.241 kb on - strand, within LRK53_RS15985 at 3510.241 kb on - strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.534 kb on + strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.535 kb on - strand, within LRK53_RS15985 at 3510.594 kb on + strand, within LRK53_RS15985 at 3510.594 kb on + strand, within LRK53_RS15985 at 3510.594 kb on + strand, within LRK53_RS15985 at 3510.594 kb on + strand, within LRK53_RS15985 at 3510.595 kb on - strand, within LRK53_RS15985 at 3510.595 kb on - strand, within LRK53_RS15985 at 3510.595 kb on - strand, within LRK53_RS15985 at 3510.654 kb on + strand, within LRK53_RS15985 at 3510.720 kb on + strand, within LRK53_RS15985 at 3510.720 kb on + strand, within LRK53_RS15985 at 3510.720 kb on + strand, within LRK53_RS15985 at 3510.721 kb on - strand, within LRK53_RS15985 at 3510.915 kb on - strand at 3511.106 kb on - strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.435 kb on + strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.436 kb on - strand at 3511.838 kb on - strand, within LRK53_RS15990 at 3511.838 kb on - strand, within LRK53_RS15990
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 3,509,992 + -1.6 3,509,992 + -0.9 3,509,992 + -0.5 3,509,993 - +0.5 3,509,993 - +0.6 3,509,993 - -1.1 3,509,993 - +1.7 3,510,104 - +0.8 3,510,104 - +0.2 3,510,240 + LRK53_RS15985 0.12 -0.8 3,510,240 + LRK53_RS15985 0.12 +0.5 3,510,240 + LRK53_RS15985 0.12 -0.8 3,510,240 + LRK53_RS15985 0.12 +0.7 3,510,240 + LRK53_RS15985 0.12 -1.3 3,510,240 + LRK53_RS15985 0.12 -0.3 3,510,240 + LRK53_RS15985 0.12 -2.0 3,510,241 - LRK53_RS15985 0.13 -0.8 3,510,241 - LRK53_RS15985 0.13 -0.6 3,510,241 - LRK53_RS15985 0.13 -1.1 3,510,241 - LRK53_RS15985 0.13 +2.0 3,510,241 - LRK53_RS15985 0.13 -0.7 3,510,241 - LRK53_RS15985 0.13 +0.1 3,510,534 + LRK53_RS15985 0.47 -1.2 3,510,534 + LRK53_RS15985 0.47 -2.2 3,510,534 + LRK53_RS15985 0.47 -1.6 3,510,534 + LRK53_RS15985 0.47 -1.8 3,510,534 + LRK53_RS15985 0.47 -2.3 3,510,534 + LRK53_RS15985 0.47 -2.6 3,510,534 + LRK53_RS15985 0.47 -1.5 3,510,535 - LRK53_RS15985 0.47 -1.5 3,510,535 - LRK53_RS15985 0.47 -1.2 3,510,535 - LRK53_RS15985 0.47 -0.3 3,510,535 - LRK53_RS15985 0.47 -1.0 3,510,535 - LRK53_RS15985 0.47 +0.3 3,510,535 - LRK53_RS15985 0.47 -0.5 3,510,535 - LRK53_RS15985 0.47 -1.2 3,510,535 - LRK53_RS15985 0.47 -0.7 3,510,535 - LRK53_RS15985 0.47 +0.9 3,510,594 + LRK53_RS15985 0.54 -0.9 3,510,594 + LRK53_RS15985 0.54 -2.5 3,510,594 + LRK53_RS15985 0.54 +0.1 3,510,594 + LRK53_RS15985 0.54 -1.3 3,510,595 - LRK53_RS15985 0.54 -0.9 3,510,595 - LRK53_RS15985 0.54 -0.4 3,510,595 - LRK53_RS15985 0.54 -0.9 3,510,654 + LRK53_RS15985 0.61 +0.1 3,510,720 + LRK53_RS15985 0.69 -1.3 3,510,720 + LRK53_RS15985 0.69 -2.3 3,510,720 + LRK53_RS15985 0.69 -1.2 3,510,721 - LRK53_RS15985 0.69 -0.3 3,510,915 - -1.0 3,511,106 - -1.0 3,511,435 + -1.0 3,511,435 + -0.9 3,511,435 + +0.4 3,511,435 + -1.3 3,511,435 + -1.7 3,511,435 + -0.4 3,511,435 + -1.2 3,511,435 + -2.0 3,511,435 + -0.6 3,511,435 + +0.9 3,511,436 - +0.9 3,511,436 - -0.9 3,511,436 - +2.3 3,511,436 - -1.0 3,511,436 - -1.1 3,511,436 - -0.2 3,511,436 - -0.9 3,511,436 - -1.3 3,511,436 - -0.7 3,511,436 - +0.3 3,511,436 - -1.4 3,511,436 - -0.1 3,511,436 - -1.6 3,511,436 - -0.4 3,511,436 - -1.4 3,511,436 - -0.3 3,511,436 - -1.1 3,511,436 - -0.5 3,511,436 - -0.6 3,511,838 - LRK53_RS15990 0.20 +0.7 3,511,838 - LRK53_RS15990 0.20 -0.7
Or see this region's nucleotide sequence