Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15985

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15980 and LRK53_RS15985 are separated by 41 nucleotidesLRK53_RS15985 and LRK53_RS15990 are separated by 443 nucleotides LRK53_RS15980: LRK53_RS15980 - hypothetical protein, at 3,508,137 to 3,510,092 _RS15980 LRK53_RS15985: LRK53_RS15985 - hypothetical protein, at 3,510,134 to 3,510,985 _RS15985 LRK53_RS15990: LRK53_RS15990 - elongation factor G, at 3,511,429 to 3,513,468 _RS15990 Position (kb) 3510 3511Strain fitness (log2 ratio) -2 -1 0 1 2at 3509.992 kb on + strandat 3509.992 kb on + strandat 3509.992 kb on + strandat 3509.993 kb on - strandat 3509.993 kb on - strandat 3509.993 kb on - strandat 3509.993 kb on - strandat 3510.104 kb on - strandat 3510.104 kb on - strandat 3510.240 kb on + strand, within LRK53_RS15985at 3510.240 kb on + strand, within LRK53_RS15985at 3510.240 kb on + strand, within LRK53_RS15985at 3510.240 kb on + strand, within LRK53_RS15985at 3510.240 kb on + strand, within LRK53_RS15985at 3510.240 kb on + strand, within LRK53_RS15985at 3510.240 kb on + strand, within LRK53_RS15985at 3510.241 kb on - strand, within LRK53_RS15985at 3510.241 kb on - strand, within LRK53_RS15985at 3510.241 kb on - strand, within LRK53_RS15985at 3510.241 kb on - strand, within LRK53_RS15985at 3510.241 kb on - strand, within LRK53_RS15985at 3510.241 kb on - strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.534 kb on + strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.535 kb on - strand, within LRK53_RS15985at 3510.594 kb on + strand, within LRK53_RS15985at 3510.594 kb on + strand, within LRK53_RS15985at 3510.594 kb on + strand, within LRK53_RS15985at 3510.594 kb on + strand, within LRK53_RS15985at 3510.595 kb on - strand, within LRK53_RS15985at 3510.595 kb on - strand, within LRK53_RS15985at 3510.595 kb on - strand, within LRK53_RS15985at 3510.654 kb on + strand, within LRK53_RS15985at 3510.720 kb on + strand, within LRK53_RS15985at 3510.720 kb on + strand, within LRK53_RS15985at 3510.720 kb on + strand, within LRK53_RS15985at 3510.721 kb on - strand, within LRK53_RS15985at 3510.915 kb on - strandat 3511.106 kb on - strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.435 kb on + strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.436 kb on - strandat 3511.838 kb on - strand, within LRK53_RS15990at 3511.838 kb on - strand, within LRK53_RS15990

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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3,509,992 + -1.6
3,509,992 + -0.9
3,509,992 + -0.5
3,509,993 - +0.5
3,509,993 - +0.6
3,509,993 - -1.1
3,509,993 - +1.7
3,510,104 - +0.8
3,510,104 - +0.2
3,510,240 + LRK53_RS15985 0.12 -0.8
3,510,240 + LRK53_RS15985 0.12 +0.5
3,510,240 + LRK53_RS15985 0.12 -0.8
3,510,240 + LRK53_RS15985 0.12 +0.7
3,510,240 + LRK53_RS15985 0.12 -1.3
3,510,240 + LRK53_RS15985 0.12 -0.3
3,510,240 + LRK53_RS15985 0.12 -2.0
3,510,241 - LRK53_RS15985 0.13 -0.8
3,510,241 - LRK53_RS15985 0.13 -0.6
3,510,241 - LRK53_RS15985 0.13 -1.1
3,510,241 - LRK53_RS15985 0.13 +2.0
3,510,241 - LRK53_RS15985 0.13 -0.7
3,510,241 - LRK53_RS15985 0.13 +0.1
3,510,534 + LRK53_RS15985 0.47 -1.2
3,510,534 + LRK53_RS15985 0.47 -2.2
3,510,534 + LRK53_RS15985 0.47 -1.6
3,510,534 + LRK53_RS15985 0.47 -1.8
3,510,534 + LRK53_RS15985 0.47 -2.3
3,510,534 + LRK53_RS15985 0.47 -2.6
3,510,534 + LRK53_RS15985 0.47 -1.5
3,510,535 - LRK53_RS15985 0.47 -1.5
3,510,535 - LRK53_RS15985 0.47 -1.2
3,510,535 - LRK53_RS15985 0.47 -0.3
3,510,535 - LRK53_RS15985 0.47 -1.0
3,510,535 - LRK53_RS15985 0.47 +0.3
3,510,535 - LRK53_RS15985 0.47 -0.5
3,510,535 - LRK53_RS15985 0.47 -1.2
3,510,535 - LRK53_RS15985 0.47 -0.7
3,510,535 - LRK53_RS15985 0.47 +0.9
3,510,594 + LRK53_RS15985 0.54 -0.9
3,510,594 + LRK53_RS15985 0.54 -2.5
3,510,594 + LRK53_RS15985 0.54 +0.1
3,510,594 + LRK53_RS15985 0.54 -1.3
3,510,595 - LRK53_RS15985 0.54 -0.9
3,510,595 - LRK53_RS15985 0.54 -0.4
3,510,595 - LRK53_RS15985 0.54 -0.9
3,510,654 + LRK53_RS15985 0.61 +0.1
3,510,720 + LRK53_RS15985 0.69 -1.3
3,510,720 + LRK53_RS15985 0.69 -2.3
3,510,720 + LRK53_RS15985 0.69 -1.2
3,510,721 - LRK53_RS15985 0.69 -0.3
3,510,915 - -1.0
3,511,106 - -1.0
3,511,435 + -1.0
3,511,435 + -0.9
3,511,435 + +0.4
3,511,435 + -1.3
3,511,435 + -1.7
3,511,435 + -0.4
3,511,435 + -1.2
3,511,435 + -2.0
3,511,435 + -0.6
3,511,435 + +0.9
3,511,436 - +0.9
3,511,436 - -0.9
3,511,436 - +2.3
3,511,436 - -1.0
3,511,436 - -1.1
3,511,436 - -0.2
3,511,436 - -0.9
3,511,436 - -1.3
3,511,436 - -0.7
3,511,436 - +0.3
3,511,436 - -1.4
3,511,436 - -0.1
3,511,436 - -1.6
3,511,436 - -0.4
3,511,436 - -1.4
3,511,436 - -0.3
3,511,436 - -1.1
3,511,436 - -0.5
3,511,436 - -0.6
3,511,838 - LRK53_RS15990 0.20 +0.7
3,511,838 - LRK53_RS15990 0.20 -0.7

Or see this region's nucleotide sequence