Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15055 and LRK53_RS15060 are separated by 91 nucleotides LRK53_RS15060 and LRK53_RS15065 overlap by 4 nucleotides
LRK53_RS15055: LRK53_RS15055 - flagellar hook-length control protein FliK, at 3,289,217 to 3,290,317
_RS15055
LRK53_RS15060: LRK53_RS15060 - flagellar export protein FliJ, at 3,290,409 to 3,290,834
_RS15060
LRK53_RS15065: LRK53_RS15065 - flagellar protein export ATPase FliI, at 3,290,831 to 3,292,138
_RS15065
Position (kb)
3290
3291 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3289.667 kb on + strand, within LRK53_RS15055 at 3289.727 kb on + strand, within LRK53_RS15055 at 3289.727 kb on + strand, within LRK53_RS15055 at 3289.727 kb on + strand, within LRK53_RS15055 at 3289.728 kb on - strand, within LRK53_RS15055 at 3289.728 kb on - strand, within LRK53_RS15055 at 3289.728 kb on - strand, within LRK53_RS15055 at 3289.728 kb on - strand, within LRK53_RS15055 at 3289.728 kb on - strand, within LRK53_RS15055 at 3289.728 kb on - strand, within LRK53_RS15055 at 3290.055 kb on - strand, within LRK53_RS15055 at 3290.426 kb on - strand at 3290.686 kb on + strand, within LRK53_RS15060 at 3290.687 kb on - strand, within LRK53_RS15060 at 3290.979 kb on + strand, within LRK53_RS15065 at 3291.024 kb on + strand, within LRK53_RS15065 at 3291.024 kb on + strand, within LRK53_RS15065 at 3291.024 kb on + strand, within LRK53_RS15065 at 3291.024 kb on + strand, within LRK53_RS15065 at 3291.025 kb on - strand, within LRK53_RS15065 at 3291.025 kb on - strand, within LRK53_RS15065 at 3291.207 kb on + strand, within LRK53_RS15065 at 3291.234 kb on + strand, within LRK53_RS15065 at 3291.234 kb on + strand, within LRK53_RS15065 at 3291.235 kb on - strand, within LRK53_RS15065 at 3291.456 kb on + strand, within LRK53_RS15065 at 3291.456 kb on + strand, within LRK53_RS15065 at 3291.457 kb on - strand, within LRK53_RS15065 at 3291.618 kb on + strand, within LRK53_RS15065 at 3291.618 kb on + strand, within LRK53_RS15065 at 3291.619 kb on - strand, within LRK53_RS15065
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 3,289,667 + LRK53_RS15055 0.41 -0.7 3,289,727 + LRK53_RS15055 0.46 +0.1 3,289,727 + LRK53_RS15055 0.46 -0.2 3,289,727 + LRK53_RS15055 0.46 -0.6 3,289,728 - LRK53_RS15055 0.46 +0.6 3,289,728 - LRK53_RS15055 0.46 -1.6 3,289,728 - LRK53_RS15055 0.46 -1.8 3,289,728 - LRK53_RS15055 0.46 -2.3 3,289,728 - LRK53_RS15055 0.46 -1.6 3,289,728 - LRK53_RS15055 0.46 -1.5 3,290,055 - LRK53_RS15055 0.76 -1.1 3,290,426 - +0.2 3,290,686 + LRK53_RS15060 0.65 -1.0 3,290,687 - LRK53_RS15060 0.65 -1.7 3,290,979 + LRK53_RS15065 0.11 -0.4 3,291,024 + LRK53_RS15065 0.15 +0.9 3,291,024 + LRK53_RS15065 0.15 +1.1 3,291,024 + LRK53_RS15065 0.15 +2.2 3,291,024 + LRK53_RS15065 0.15 -0.4 3,291,025 - LRK53_RS15065 0.15 -2.4 3,291,025 - LRK53_RS15065 0.15 -0.4 3,291,207 + LRK53_RS15065 0.29 -0.8 3,291,234 + LRK53_RS15065 0.31 -0.7 3,291,234 + LRK53_RS15065 0.31 -1.1 3,291,235 - LRK53_RS15065 0.31 -0.7 3,291,456 + LRK53_RS15065 0.48 -0.5 3,291,456 + LRK53_RS15065 0.48 -0.7 3,291,457 - LRK53_RS15065 0.48 -1.9 3,291,618 + LRK53_RS15065 0.60 +0.3 3,291,618 + LRK53_RS15065 0.60 -1.5 3,291,619 - LRK53_RS15065 0.60 -1.2
Or see this region's nucleotide sequence