Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS15045

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS15030 and LRK53_RS15035 overlap by 4 nucleotidesLRK53_RS15035 and LRK53_RS15040 are separated by 7 nucleotidesLRK53_RS15040 and LRK53_RS15045 overlap by 4 nucleotidesLRK53_RS15045 and LRK53_RS15050 are separated by 16 nucleotidesLRK53_RS15050 and LRK53_RS15055 are separated by 229 nucleotides LRK53_RS15030: LRK53_RS15030 - flagellar type III secretion system pore protein FliP, at 3,285,916 to 3,286,662 _RS15030 LRK53_RS15035: LRK53_RS15035 - flagellar biosynthetic protein FliO, at 3,286,659 to 3,287,069 _RS15035 LRK53_RS15040: LRK53_RS15040 - flagellar motor switch protein FliN, at 3,287,077 to 3,287,424 _RS15040 LRK53_RS15045: LRK53_RS15045 - flagellar motor switch protein FliM, at 3,287,421 to 3,288,437 _RS15045 LRK53_RS15050: LRK53_RS15050 - flagellar basal body-associated FliL family protein, at 3,288,454 to 3,288,987 _RS15050 LRK53_RS15055: LRK53_RS15055 - flagellar hook-length control protein FliK, at 3,289,217 to 3,290,317 _RS15055 Position (kb) 3287 3288 3289Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3286.746 kb on + strand, within LRK53_RS15035at 3286.757 kb on - strand, within LRK53_RS15035at 3287.049 kb on + strandat 3287.049 kb on + strandat 3287.049 kb on + strandat 3287.049 kb on + strandat 3287.266 kb on - strand, within LRK53_RS15040at 3287.524 kb on + strand, within LRK53_RS15045at 3287.557 kb on + strand, within LRK53_RS15045at 3287.557 kb on + strand, within LRK53_RS15045at 3287.664 kb on + strand, within LRK53_RS15045at 3287.664 kb on + strand, within LRK53_RS15045at 3287.665 kb on - strand, within LRK53_RS15045at 3287.665 kb on - strand, within LRK53_RS15045at 3287.779 kb on + strand, within LRK53_RS15045at 3287.780 kb on - strand, within LRK53_RS15045at 3287.902 kb on + strand, within LRK53_RS15045at 3287.902 kb on + strand, within LRK53_RS15045at 3288.090 kb on + strand, within LRK53_RS15045at 3288.091 kb on - strand, within LRK53_RS15045at 3288.163 kb on + strand, within LRK53_RS15045at 3288.163 kb on + strand, within LRK53_RS15045at 3288.163 kb on + strand, within LRK53_RS15045at 3288.163 kb on + strand, within LRK53_RS15045at 3288.164 kb on - strand, within LRK53_RS15045at 3288.164 kb on - strand, within LRK53_RS15045at 3288.164 kb on - strand, within LRK53_RS15045at 3288.164 kb on - strand, within LRK53_RS15045at 3288.164 kb on - strand, within LRK53_RS15045at 3288.164 kb on - strand, within LRK53_RS15045at 3288.325 kb on + strand, within LRK53_RS15045at 3288.325 kb on + strand, within LRK53_RS15045at 3288.326 kb on - strand, within LRK53_RS15045at 3288.326 kb on - strand, within LRK53_RS15045at 3288.326 kb on - strand, within LRK53_RS15045at 3288.326 kb on - strand, within LRK53_RS15045at 3288.479 kb on + strandat 3288.479 kb on + strandat 3288.479 kb on + strandat 3288.479 kb on + strandat 3288.479 kb on + strandat 3288.480 kb on - strandat 3288.705 kb on - strand, within LRK53_RS15050at 3288.705 kb on - strand, within LRK53_RS15050at 3288.705 kb on - strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.761 kb on + strand, within LRK53_RS15050at 3288.762 kb on - strand, within LRK53_RS15050at 3288.762 kb on - strand, within LRK53_RS15050at 3288.762 kb on - strand, within LRK53_RS15050at 3288.762 kb on - strand, within LRK53_RS15050at 3288.836 kb on + strand, within LRK53_RS15050at 3288.836 kb on + strand, within LRK53_RS15050at 3288.836 kb on + strand, within LRK53_RS15050at 3288.836 kb on + strand, within LRK53_RS15050at 3289.046 kb on + strandat 3289.046 kb on + strandat 3289.046 kb on + strandat 3289.046 kb on + strandat 3289.047 kb on - strandat 3289.047 kb on - strandat 3289.047 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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3,286,746 + LRK53_RS15035 0.21 -0.5
3,286,757 - LRK53_RS15035 0.24 -0.0
3,287,049 + -1.2
3,287,049 + +0.1
3,287,049 + -2.0
3,287,049 + -1.0
3,287,266 - LRK53_RS15040 0.54 +1.7
3,287,524 + LRK53_RS15045 0.10 -1.9
3,287,557 + LRK53_RS15045 0.13 -1.0
3,287,557 + LRK53_RS15045 0.13 -0.3
3,287,664 + LRK53_RS15045 0.24 -1.4
3,287,664 + LRK53_RS15045 0.24 -0.8
3,287,665 - LRK53_RS15045 0.24 -1.6
3,287,665 - LRK53_RS15045 0.24 -2.9
3,287,779 + LRK53_RS15045 0.35 +0.1
3,287,780 - LRK53_RS15045 0.35 -0.1
3,287,902 + LRK53_RS15045 0.47 -1.6
3,287,902 + LRK53_RS15045 0.47 -0.8
3,288,090 + LRK53_RS15045 0.66 -1.1
3,288,091 - LRK53_RS15045 0.66 +0.2
3,288,163 + LRK53_RS15045 0.73 -0.6
3,288,163 + LRK53_RS15045 0.73 -0.2
3,288,163 + LRK53_RS15045 0.73 -0.5
3,288,163 + LRK53_RS15045 0.73 +1.0
3,288,164 - LRK53_RS15045 0.73 +0.5
3,288,164 - LRK53_RS15045 0.73 -0.7
3,288,164 - LRK53_RS15045 0.73 -1.1
3,288,164 - LRK53_RS15045 0.73 -1.2
3,288,164 - LRK53_RS15045 0.73 -1.9
3,288,164 - LRK53_RS15045 0.73 -0.4
3,288,325 + LRK53_RS15045 0.89 -2.2
3,288,325 + LRK53_RS15045 0.89 -0.1
3,288,326 - LRK53_RS15045 0.89 +0.5
3,288,326 - LRK53_RS15045 0.89 +1.0
3,288,326 - LRK53_RS15045 0.89 -2.9
3,288,326 - LRK53_RS15045 0.89 -1.6
3,288,479 + +1.7
3,288,479 + -0.8
3,288,479 + -1.0
3,288,479 + -1.4
3,288,479 + -0.8
3,288,480 - +1.6
3,288,705 - LRK53_RS15050 0.47 +2.0
3,288,705 - LRK53_RS15050 0.47 -0.9
3,288,705 - LRK53_RS15050 0.47 -1.6
3,288,761 + LRK53_RS15050 0.57 -1.1
3,288,761 + LRK53_RS15050 0.57 -1.8
3,288,761 + LRK53_RS15050 0.57 +1.3
3,288,761 + LRK53_RS15050 0.57 +0.0
3,288,761 + LRK53_RS15050 0.57 -1.0
3,288,761 + LRK53_RS15050 0.57 -0.7
3,288,761 + LRK53_RS15050 0.57 -1.8
3,288,761 + LRK53_RS15050 0.57 -0.5
3,288,762 - LRK53_RS15050 0.58 -1.5
3,288,762 - LRK53_RS15050 0.58 -2.3
3,288,762 - LRK53_RS15050 0.58 +0.1
3,288,762 - LRK53_RS15050 0.58 +2.0
3,288,836 + LRK53_RS15050 0.72 +0.3
3,288,836 + LRK53_RS15050 0.72 +0.1
3,288,836 + LRK53_RS15050 0.72 +0.5
3,288,836 + LRK53_RS15050 0.72 -1.4
3,289,046 + +0.1
3,289,046 + -1.4
3,289,046 + -1.1
3,289,046 + -1.0
3,289,047 - -2.4
3,289,047 - +0.9
3,289,047 - -0.4

Or see this region's nucleotide sequence