Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS15030 and LRK53_RS15035 overlap by 4 nucleotides LRK53_RS15035 and LRK53_RS15040 are separated by 7 nucleotides LRK53_RS15040 and LRK53_RS15045 overlap by 4 nucleotides LRK53_RS15045 and LRK53_RS15050 are separated by 16 nucleotides LRK53_RS15050 and LRK53_RS15055 are separated by 229 nucleotides
LRK53_RS15030: LRK53_RS15030 - flagellar type III secretion system pore protein FliP, at 3,285,916 to 3,286,662
_RS15030
LRK53_RS15035: LRK53_RS15035 - flagellar biosynthetic protein FliO, at 3,286,659 to 3,287,069
_RS15035
LRK53_RS15040: LRK53_RS15040 - flagellar motor switch protein FliN, at 3,287,077 to 3,287,424
_RS15040
LRK53_RS15045: LRK53_RS15045 - flagellar motor switch protein FliM, at 3,287,421 to 3,288,437
_RS15045
LRK53_RS15050: LRK53_RS15050 - flagellar basal body-associated FliL family protein, at 3,288,454 to 3,288,987
_RS15050
LRK53_RS15055: LRK53_RS15055 - flagellar hook-length control protein FliK, at 3,289,217 to 3,290,317
_RS15055
Position (kb)
3287
3288
3289 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3286.746 kb on + strand, within LRK53_RS15035 at 3286.757 kb on - strand, within LRK53_RS15035 at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.049 kb on + strand at 3287.266 kb on - strand, within LRK53_RS15040 at 3287.524 kb on + strand, within LRK53_RS15045 at 3287.557 kb on + strand, within LRK53_RS15045 at 3287.557 kb on + strand, within LRK53_RS15045 at 3287.664 kb on + strand, within LRK53_RS15045 at 3287.664 kb on + strand, within LRK53_RS15045 at 3287.665 kb on - strand, within LRK53_RS15045 at 3287.665 kb on - strand, within LRK53_RS15045 at 3287.779 kb on + strand, within LRK53_RS15045 at 3287.780 kb on - strand, within LRK53_RS15045 at 3287.902 kb on + strand, within LRK53_RS15045 at 3287.902 kb on + strand, within LRK53_RS15045 at 3288.090 kb on + strand, within LRK53_RS15045 at 3288.091 kb on - strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.163 kb on + strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.164 kb on - strand, within LRK53_RS15045 at 3288.325 kb on + strand, within LRK53_RS15045 at 3288.325 kb on + strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.326 kb on - strand, within LRK53_RS15045 at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.479 kb on + strand at 3288.480 kb on - strand at 3288.705 kb on - strand, within LRK53_RS15050 at 3288.705 kb on - strand, within LRK53_RS15050 at 3288.705 kb on - strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.761 kb on + strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.762 kb on - strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3288.836 kb on + strand, within LRK53_RS15050 at 3289.046 kb on + strand at 3289.046 kb on + strand at 3289.046 kb on + strand at 3289.046 kb on + strand at 3289.047 kb on - strand at 3289.047 kb on - strand at 3289.047 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 3,286,746 + LRK53_RS15035 0.21 -0.5 3,286,757 - LRK53_RS15035 0.24 -0.0 3,287,049 + -1.2 3,287,049 + +0.1 3,287,049 + -2.0 3,287,049 + -1.0 3,287,266 - LRK53_RS15040 0.54 +1.7 3,287,524 + LRK53_RS15045 0.10 -1.9 3,287,557 + LRK53_RS15045 0.13 -1.0 3,287,557 + LRK53_RS15045 0.13 -0.3 3,287,664 + LRK53_RS15045 0.24 -1.4 3,287,664 + LRK53_RS15045 0.24 -0.8 3,287,665 - LRK53_RS15045 0.24 -1.6 3,287,665 - LRK53_RS15045 0.24 -2.9 3,287,779 + LRK53_RS15045 0.35 +0.1 3,287,780 - LRK53_RS15045 0.35 -0.1 3,287,902 + LRK53_RS15045 0.47 -1.6 3,287,902 + LRK53_RS15045 0.47 -0.8 3,288,090 + LRK53_RS15045 0.66 -1.1 3,288,091 - LRK53_RS15045 0.66 +0.2 3,288,163 + LRK53_RS15045 0.73 -0.6 3,288,163 + LRK53_RS15045 0.73 -0.2 3,288,163 + LRK53_RS15045 0.73 -0.5 3,288,163 + LRK53_RS15045 0.73 +1.0 3,288,164 - LRK53_RS15045 0.73 +0.5 3,288,164 - LRK53_RS15045 0.73 -0.7 3,288,164 - LRK53_RS15045 0.73 -1.1 3,288,164 - LRK53_RS15045 0.73 -1.2 3,288,164 - LRK53_RS15045 0.73 -1.9 3,288,164 - LRK53_RS15045 0.73 -0.4 3,288,325 + LRK53_RS15045 0.89 -2.2 3,288,325 + LRK53_RS15045 0.89 -0.1 3,288,326 - LRK53_RS15045 0.89 +0.5 3,288,326 - LRK53_RS15045 0.89 +1.0 3,288,326 - LRK53_RS15045 0.89 -2.9 3,288,326 - LRK53_RS15045 0.89 -1.6 3,288,479 + +1.7 3,288,479 + -0.8 3,288,479 + -1.0 3,288,479 + -1.4 3,288,479 + -0.8 3,288,480 - +1.6 3,288,705 - LRK53_RS15050 0.47 +2.0 3,288,705 - LRK53_RS15050 0.47 -0.9 3,288,705 - LRK53_RS15050 0.47 -1.6 3,288,761 + LRK53_RS15050 0.57 -1.1 3,288,761 + LRK53_RS15050 0.57 -1.8 3,288,761 + LRK53_RS15050 0.57 +1.3 3,288,761 + LRK53_RS15050 0.57 +0.0 3,288,761 + LRK53_RS15050 0.57 -1.0 3,288,761 + LRK53_RS15050 0.57 -0.7 3,288,761 + LRK53_RS15050 0.57 -1.8 3,288,761 + LRK53_RS15050 0.57 -0.5 3,288,762 - LRK53_RS15050 0.58 -1.5 3,288,762 - LRK53_RS15050 0.58 -2.3 3,288,762 - LRK53_RS15050 0.58 +0.1 3,288,762 - LRK53_RS15050 0.58 +2.0 3,288,836 + LRK53_RS15050 0.72 +0.3 3,288,836 + LRK53_RS15050 0.72 +0.1 3,288,836 + LRK53_RS15050 0.72 +0.5 3,288,836 + LRK53_RS15050 0.72 -1.4 3,289,046 + +0.1 3,289,046 + -1.4 3,289,046 + -1.1 3,289,046 + -1.0 3,289,047 - -2.4 3,289,047 - +0.9 3,289,047 - -0.4
Or see this region's nucleotide sequence