Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS14935 and LRK53_RS14940 are separated by 10 nucleotides LRK53_RS14940 and LRK53_RS14945 are separated by 13 nucleotides LRK53_RS14945 and LRK53_RS14950 are separated by 234 nucleotides
LRK53_RS14935: LRK53_RS14935 - chemotaxis protein CheA, at 3,267,273 to 3,269,288
_RS14935
LRK53_RS14940: LRK53_RS14940 - response regulator, at 3,269,299 to 3,269,661
_RS14940
LRK53_RS14945: LRK53_RS14945 - STAS domain-containing protein, at 3,269,675 to 3,270,070
_RS14945
LRK53_RS14950: LRK53_RS14950 - flagellar hook-length control protein FliK, at 3,270,305 to 3,271,447
_RS14950
Position (kb) 3269
3270 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 3269.034 kb on - strand, within LRK53_RS14935 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.444 kb on + strand, within LRK53_RS14940 at 3269.445 kb on - strand, within LRK53_RS14940 at 3269.445 kb on - strand, within LRK53_RS14940 at 3269.445 kb on - strand, within LRK53_RS14940 at 3269.445 kb on - strand, within LRK53_RS14940 at 3269.445 kb on - strand, within LRK53_RS14940
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 3,269,034 - LRK53_RS14935 0.87 +1.8 3,269,444 + LRK53_RS14940 0.40 -1.1 3,269,444 + LRK53_RS14940 0.40 -1.0 3,269,444 + LRK53_RS14940 0.40 +0.6 3,269,444 + LRK53_RS14940 0.40 -0.5 3,269,444 + LRK53_RS14940 0.40 -3.6 3,269,444 + LRK53_RS14940 0.40 -1.4 3,269,444 + LRK53_RS14940 0.40 -0.7 3,269,444 + LRK53_RS14940 0.40 -0.7 3,269,444 + LRK53_RS14940 0.40 -0.3 3,269,444 + LRK53_RS14940 0.40 -0.1 3,269,444 + LRK53_RS14940 0.40 -0.4 3,269,445 - LRK53_RS14940 0.40 -0.2 3,269,445 - LRK53_RS14940 0.40 -0.8 3,269,445 - LRK53_RS14940 0.40 -0.6 3,269,445 - LRK53_RS14940 0.40 -1.8 3,269,445 - LRK53_RS14940 0.40 -0.6
Or see this region's nucleotide sequence