Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS14925

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS14920 and LRK53_RS14925 are separated by 18 nucleotidesLRK53_RS14925 and LRK53_RS14930 are separated by 399 nucleotides LRK53_RS14920: LRK53_RS14920 - methyl-accepting chemotaxis protein, at 3,262,636 to 3,264,360 _RS14920 LRK53_RS14925: LRK53_RS14925 - chemotaxis protein CheW, at 3,264,379 to 3,264,885 _RS14925 LRK53_RS14930: LRK53_RS14930 - methyl-accepting chemotaxis protein, at 3,265,285 to 3,266,991 _RS14930 Position (kb) 3264 3265Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3263.742 kb on + strand, within LRK53_RS14920at 3263.743 kb on - strand, within LRK53_RS14920at 3263.743 kb on - strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.798 kb on + strand, within LRK53_RS14920at 3263.799 kb on - strand, within LRK53_RS14920at 3263.799 kb on - strand, within LRK53_RS14920at 3263.799 kb on - strand, within LRK53_RS14920at 3263.799 kb on - strand, within LRK53_RS14920at 3263.799 kb on - strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.930 kb on + strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.931 kb on - strand, within LRK53_RS14920at 3263.955 kb on - strand, within LRK53_RS14920at 3263.955 kb on - strand, within LRK53_RS14920at 3263.975 kb on + strand, within LRK53_RS14920at 3263.984 kb on + strand, within LRK53_RS14920at 3263.984 kb on + strand, within LRK53_RS14920at 3263.984 kb on + strand, within LRK53_RS14920at 3263.984 kb on + strand, within LRK53_RS14920at 3263.984 kb on + strand, within LRK53_RS14920at 3263.984 kb on + strand, within LRK53_RS14920at 3263.985 kb on - strand, within LRK53_RS14920at 3263.985 kb on - strand, within LRK53_RS14920at 3263.985 kb on - strand, within LRK53_RS14920at 3263.985 kb on - strand, within LRK53_RS14920at 3263.985 kb on - strand, within LRK53_RS14920at 3263.985 kb on - strand, within LRK53_RS14920at 3264.186 kb on + strand, within LRK53_RS14920at 3264.186 kb on + strand, within LRK53_RS14920at 3264.186 kb on + strand, within LRK53_RS14920at 3264.186 kb on + strand, within LRK53_RS14920at 3264.186 kb on + strand, within LRK53_RS14920at 3264.186 kb on + strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.187 kb on - strand, within LRK53_RS14920at 3264.197 kb on + strandat 3264.197 kb on + strandat 3264.197 kb on + strandat 3264.197 kb on + strandat 3264.198 kb on - strandat 3264.198 kb on - strandat 3264.198 kb on - strandat 3264.198 kb on - strandat 3264.198 kb on - strandat 3264.198 kb on - strandat 3264.198 kb on - strandat 3264.330 kb on + strandat 3264.331 kb on - strandat 3264.331 kb on - strandat 3264.740 kb on + strand, within LRK53_RS14925at 3264.740 kb on + strand, within LRK53_RS14925at 3264.740 kb on + strand, within LRK53_RS14925at 3264.740 kb on + strand, within LRK53_RS14925at 3264.740 kb on + strand, within LRK53_RS14925at 3264.740 kb on + strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.741 kb on - strand, within LRK53_RS14925at 3264.815 kb on + strand, within LRK53_RS14925at 3264.815 kb on + strand, within LRK53_RS14925at 3264.894 kb on + strandat 3264.894 kb on + strandat 3264.895 kb on - strandat 3264.895 kb on - strandat 3264.895 kb on - strandat 3264.964 kb on + strandat 3264.964 kb on + strandat 3264.964 kb on + strandat 3264.964 kb on + strandat 3264.964 kb on + strandat 3264.964 kb on + strandat 3264.964 kb on + strandat 3264.965 kb on - strandat 3264.965 kb on - strandat 3264.965 kb on - strandat 3264.965 kb on - strandat 3264.965 kb on - strandat 3264.965 kb on - strandat 3265.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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3,263,742 + LRK53_RS14920 0.64 +0.2
3,263,743 - LRK53_RS14920 0.64 -0.2
3,263,743 - LRK53_RS14920 0.64 -1.0
3,263,798 + LRK53_RS14920 0.67 -0.8
3,263,798 + LRK53_RS14920 0.67 +1.2
3,263,798 + LRK53_RS14920 0.67 +0.8
3,263,798 + LRK53_RS14920 0.67 +0.8
3,263,798 + LRK53_RS14920 0.67 -0.6
3,263,798 + LRK53_RS14920 0.67 -2.9
3,263,798 + LRK53_RS14920 0.67 -1.7
3,263,798 + LRK53_RS14920 0.67 -0.7
3,263,799 - LRK53_RS14920 0.67 -0.5
3,263,799 - LRK53_RS14920 0.67 -1.2
3,263,799 - LRK53_RS14920 0.67 -0.9
3,263,799 - LRK53_RS14920 0.67 -0.5
3,263,799 - LRK53_RS14920 0.67 +0.1
3,263,930 + LRK53_RS14920 0.75 -0.9
3,263,930 + LRK53_RS14920 0.75 +0.4
3,263,930 + LRK53_RS14920 0.75 -0.9
3,263,930 + LRK53_RS14920 0.75 -1.5
3,263,930 + LRK53_RS14920 0.75 -0.4
3,263,930 + LRK53_RS14920 0.75 -0.0
3,263,930 + LRK53_RS14920 0.75 +1.3
3,263,930 + LRK53_RS14920 0.75 -2.3
3,263,930 + LRK53_RS14920 0.75 +0.4
3,263,930 + LRK53_RS14920 0.75 +0.3
3,263,930 + LRK53_RS14920 0.75 -0.4
3,263,930 + LRK53_RS14920 0.75 -0.2
3,263,930 + LRK53_RS14920 0.75 -1.2
3,263,930 + LRK53_RS14920 0.75 -0.7
3,263,930 + LRK53_RS14920 0.75 -0.4
3,263,930 + LRK53_RS14920 0.75 -1.4
3,263,930 + LRK53_RS14920 0.75 -0.3
3,263,930 + LRK53_RS14920 0.75 -1.2
3,263,930 + LRK53_RS14920 0.75 -1.0
3,263,931 - LRK53_RS14920 0.75 +1.8
3,263,931 - LRK53_RS14920 0.75 -0.6
3,263,931 - LRK53_RS14920 0.75 -0.7
3,263,931 - LRK53_RS14920 0.75 -1.4
3,263,931 - LRK53_RS14920 0.75 -0.1
3,263,931 - LRK53_RS14920 0.75 -1.0
3,263,931 - LRK53_RS14920 0.75 -0.8
3,263,931 - LRK53_RS14920 0.75 +0.7
3,263,931 - LRK53_RS14920 0.75 -1.1
3,263,931 - LRK53_RS14920 0.75 -0.6
3,263,931 - LRK53_RS14920 0.75 -0.7
3,263,931 - LRK53_RS14920 0.75 -1.7
3,263,931 - LRK53_RS14920 0.75 +0.5
3,263,931 - LRK53_RS14920 0.75 -1.0
3,263,931 - LRK53_RS14920 0.75 -1.7
3,263,931 - LRK53_RS14920 0.75 +0.2
3,263,931 - LRK53_RS14920 0.75 -1.0
3,263,931 - LRK53_RS14920 0.75 -1.7
3,263,931 - LRK53_RS14920 0.75 -2.0
3,263,931 - LRK53_RS14920 0.75 -0.2
3,263,931 - LRK53_RS14920 0.75 -0.4
3,263,931 - LRK53_RS14920 0.75 +0.4
3,263,931 - LRK53_RS14920 0.75 -0.6
3,263,931 - LRK53_RS14920 0.75 -1.4
3,263,931 - LRK53_RS14920 0.75 -1.3
3,263,931 - LRK53_RS14920 0.75 +0.8
3,263,955 - LRK53_RS14920 0.76 -0.2
3,263,955 - LRK53_RS14920 0.76 -1.2
3,263,975 + LRK53_RS14920 0.78 -0.9
3,263,984 + LRK53_RS14920 0.78 -0.9
3,263,984 + LRK53_RS14920 0.78 +0.4
3,263,984 + LRK53_RS14920 0.78 -2.2
3,263,984 + LRK53_RS14920 0.78 -0.3
3,263,984 + LRK53_RS14920 0.78 -0.6
3,263,984 + LRK53_RS14920 0.78 -1.3
3,263,985 - LRK53_RS14920 0.78 -0.4
3,263,985 - LRK53_RS14920 0.78 -1.9
3,263,985 - LRK53_RS14920 0.78 -0.9
3,263,985 - LRK53_RS14920 0.78 -0.1
3,263,985 - LRK53_RS14920 0.78 -0.9
3,263,985 - LRK53_RS14920 0.78 -0.3
3,264,186 + LRK53_RS14920 0.90 -1.7
3,264,186 + LRK53_RS14920 0.90 -0.7
3,264,186 + LRK53_RS14920 0.90 +1.3
3,264,186 + LRK53_RS14920 0.90 -0.4
3,264,186 + LRK53_RS14920 0.90 -0.7
3,264,186 + LRK53_RS14920 0.90 -0.3
3,264,187 - LRK53_RS14920 0.90 -1.2
3,264,187 - LRK53_RS14920 0.90 -0.2
3,264,187 - LRK53_RS14920 0.90 -1.0
3,264,187 - LRK53_RS14920 0.90 +0.2
3,264,187 - LRK53_RS14920 0.90 -0.2
3,264,187 - LRK53_RS14920 0.90 -1.7
3,264,187 - LRK53_RS14920 0.90 -1.9
3,264,187 - LRK53_RS14920 0.90 +2.4
3,264,197 + -0.9
3,264,197 + -0.4
3,264,197 + +0.4
3,264,197 + -1.5
3,264,198 - +0.6
3,264,198 - -0.3
3,264,198 - -1.7
3,264,198 - +0.4
3,264,198 - -0.9
3,264,198 - +1.5
3,264,198 - -0.5
3,264,330 + -2.6
3,264,331 - -1.5
3,264,331 - +0.7
3,264,740 + LRK53_RS14925 0.71 -0.9
3,264,740 + LRK53_RS14925 0.71 -0.9
3,264,740 + LRK53_RS14925 0.71 -2.4
3,264,740 + LRK53_RS14925 0.71 -1.4
3,264,740 + LRK53_RS14925 0.71 -1.0
3,264,740 + LRK53_RS14925 0.71 -2.4
3,264,741 - LRK53_RS14925 0.71 -1.4
3,264,741 - LRK53_RS14925 0.71 +0.2
3,264,741 - LRK53_RS14925 0.71 -0.2
3,264,741 - LRK53_RS14925 0.71 -0.6
3,264,741 - LRK53_RS14925 0.71 -2.5
3,264,741 - LRK53_RS14925 0.71 -0.4
3,264,741 - LRK53_RS14925 0.71 -0.7
3,264,741 - LRK53_RS14925 0.71 -0.6
3,264,741 - LRK53_RS14925 0.71 +1.0
3,264,815 + LRK53_RS14925 0.86 -1.7
3,264,815 + LRK53_RS14925 0.86 -1.2
3,264,894 + -0.5
3,264,894 + +0.5
3,264,895 - -0.6
3,264,895 - -1.9
3,264,895 - -0.6
3,264,964 + -0.5
3,264,964 + -0.0
3,264,964 + -0.8
3,264,964 + -0.7
3,264,964 + -2.2
3,264,964 + +0.1
3,264,964 + -1.9
3,264,965 - -1.2
3,264,965 - -1.2
3,264,965 - -0.9
3,264,965 - -0.4
3,264,965 - +0.0
3,264,965 - -0.3
3,265,050 - +0.1

Or see this region's nucleotide sequence