Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS13110 and LRK53_RS13115 overlap by 11 nucleotides LRK53_RS13115 and LRK53_RS13120 are separated by 12 nucleotides
LRK53_RS13110: LRK53_RS13110 - FUSC family protein, at 2,890,690 to 2,892,837
_RS13110
LRK53_RS13115: LRK53_RS13115 - DUF1656 domain-containing protein, at 2,892,827 to 2,893,027
_RS13115
LRK53_RS13120: LRK53_RS13120 - HlyD family secretion protein, at 2,893,040 to 2,894,041
_RS13120
Position (kb)
2892
2893
2894 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2892.070 kb on + strand, within LRK53_RS13110 at 2892.070 kb on + strand, within LRK53_RS13110 at 2892.071 kb on - strand, within LRK53_RS13110 at 2892.071 kb on - strand, within LRK53_RS13110 at 2892.071 kb on - strand, within LRK53_RS13110 at 2892.071 kb on - strand, within LRK53_RS13110 at 2892.071 kb on - strand, within LRK53_RS13110 at 2892.071 kb on - strand, within LRK53_RS13110 at 2892.097 kb on + strand, within LRK53_RS13110 at 2892.098 kb on - strand, within LRK53_RS13110 at 2892.145 kb on + strand, within LRK53_RS13110 at 2892.145 kb on + strand, within LRK53_RS13110 at 2892.145 kb on + strand, within LRK53_RS13110 at 2892.145 kb on + strand, within LRK53_RS13110 at 2892.145 kb on + strand, within LRK53_RS13110 at 2892.145 kb on + strand, within LRK53_RS13110 at 2892.146 kb on - strand, within LRK53_RS13110 at 2892.146 kb on - strand, within LRK53_RS13110 at 2892.146 kb on - strand, within LRK53_RS13110 at 2892.146 kb on - strand, within LRK53_RS13110 at 2892.146 kb on - strand, within LRK53_RS13110 at 2892.146 kb on - strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.250 kb on + strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.251 kb on - strand, within LRK53_RS13110 at 2892.631 kb on + strand at 2892.632 kb on - strand at 2892.833 kb on + strand at 2892.833 kb on + strand at 2892.833 kb on + strand at 2892.833 kb on + strand at 2892.834 kb on - strand at 2892.834 kb on - strand at 2892.834 kb on - strand at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.857 kb on + strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.858 kb on - strand, within LRK53_RS13115 at 2892.942 kb on - strand, within LRK53_RS13115 at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.030 kb on + strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.031 kb on - strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.048 kb on + strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.049 kb on - strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.127 kb on + strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.128 kb on - strand at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.736 kb on + strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.737 kb on - strand, within LRK53_RS13120 at 2893.742 kb on + strand, within LRK53_RS13120 at 2893.742 kb on + strand, within LRK53_RS13120 at 2893.742 kb on + strand, within LRK53_RS13120 at 2893.742 kb on + strand, within LRK53_RS13120 at 2893.742 kb on + strand, within LRK53_RS13120 at 2893.743 kb on - strand, within LRK53_RS13120 at 2893.743 kb on - strand, within LRK53_RS13120 at 2893.743 kb on - strand, within LRK53_RS13120 at 2893.743 kb on - strand, within LRK53_RS13120 at 2893.743 kb on - strand, within LRK53_RS13120 at 2893.743 kb on - strand, within LRK53_RS13120 at 2894.013 kb on + strand at 2894.014 kb on - strand at 2894.014 kb on - strand at 2894.014 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 2,892,070 + LRK53_RS13110 0.64 -1.5 2,892,070 + LRK53_RS13110 0.64 -0.3 2,892,071 - LRK53_RS13110 0.64 -2.1 2,892,071 - LRK53_RS13110 0.64 +0.4 2,892,071 - LRK53_RS13110 0.64 -1.3 2,892,071 - LRK53_RS13110 0.64 +1.2 2,892,071 - LRK53_RS13110 0.64 -0.7 2,892,071 - LRK53_RS13110 0.64 -0.7 2,892,097 + LRK53_RS13110 0.66 -1.2 2,892,098 - LRK53_RS13110 0.66 -0.2 2,892,145 + LRK53_RS13110 0.68 -1.5 2,892,145 + LRK53_RS13110 0.68 -2.2 2,892,145 + LRK53_RS13110 0.68 -2.2 2,892,145 + LRK53_RS13110 0.68 -0.4 2,892,145 + LRK53_RS13110 0.68 -1.1 2,892,145 + LRK53_RS13110 0.68 +0.4 2,892,146 - LRK53_RS13110 0.68 -0.3 2,892,146 - LRK53_RS13110 0.68 -0.7 2,892,146 - LRK53_RS13110 0.68 -1.1 2,892,146 - LRK53_RS13110 0.68 +0.3 2,892,146 - LRK53_RS13110 0.68 +0.1 2,892,146 - LRK53_RS13110 0.68 -0.5 2,892,250 + LRK53_RS13110 0.73 -1.6 2,892,250 + LRK53_RS13110 0.73 -0.5 2,892,250 + LRK53_RS13110 0.73 -0.8 2,892,250 + LRK53_RS13110 0.73 -0.6 2,892,250 + LRK53_RS13110 0.73 -0.7 2,892,250 + LRK53_RS13110 0.73 -0.9 2,892,250 + LRK53_RS13110 0.73 -0.3 2,892,250 + LRK53_RS13110 0.73 -0.6 2,892,250 + LRK53_RS13110 0.73 -1.0 2,892,250 + LRK53_RS13110 0.73 -1.4 2,892,250 + LRK53_RS13110 0.73 -0.9 2,892,250 + LRK53_RS13110 0.73 -1.8 2,892,250 + LRK53_RS13110 0.73 +1.3 2,892,250 + LRK53_RS13110 0.73 +0.2 2,892,250 + LRK53_RS13110 0.73 +0.7 2,892,250 + LRK53_RS13110 0.73 -1.5 2,892,251 - LRK53_RS13110 0.73 -1.2 2,892,251 - LRK53_RS13110 0.73 -0.3 2,892,251 - LRK53_RS13110 0.73 -0.1 2,892,251 - LRK53_RS13110 0.73 -1.1 2,892,251 - LRK53_RS13110 0.73 +0.2 2,892,251 - LRK53_RS13110 0.73 -0.3 2,892,251 - LRK53_RS13110 0.73 +0.6 2,892,251 - LRK53_RS13110 0.73 -0.5 2,892,251 - LRK53_RS13110 0.73 -2.0 2,892,251 - LRK53_RS13110 0.73 +1.7 2,892,251 - LRK53_RS13110 0.73 +0.4 2,892,631 + -0.5 2,892,632 - -0.7 2,892,833 + -0.9 2,892,833 + -1.1 2,892,833 + -0.5 2,892,833 + -1.3 2,892,834 - -1.2 2,892,834 - +0.3 2,892,834 - -1.5 2,892,857 + LRK53_RS13115 0.15 -1.0 2,892,857 + LRK53_RS13115 0.15 -1.5 2,892,857 + LRK53_RS13115 0.15 +0.3 2,892,857 + LRK53_RS13115 0.15 -0.9 2,892,857 + LRK53_RS13115 0.15 +0.4 2,892,857 + LRK53_RS13115 0.15 +0.1 2,892,857 + LRK53_RS13115 0.15 +0.7 2,892,857 + LRK53_RS13115 0.15 +0.7 2,892,857 + LRK53_RS13115 0.15 +0.4 2,892,857 + LRK53_RS13115 0.15 -1.0 2,892,857 + LRK53_RS13115 0.15 +0.2 2,892,857 + LRK53_RS13115 0.15 -1.1 2,892,857 + LRK53_RS13115 0.15 -2.0 2,892,857 + LRK53_RS13115 0.15 -1.5 2,892,857 + LRK53_RS13115 0.15 -1.4 2,892,857 + LRK53_RS13115 0.15 -2.3 2,892,857 + LRK53_RS13115 0.15 -1.4 2,892,858 - LRK53_RS13115 0.15 -2.5 2,892,858 - LRK53_RS13115 0.15 -0.5 2,892,858 - LRK53_RS13115 0.15 +0.2 2,892,858 - LRK53_RS13115 0.15 -0.0 2,892,858 - LRK53_RS13115 0.15 -1.2 2,892,858 - LRK53_RS13115 0.15 -1.9 2,892,858 - LRK53_RS13115 0.15 -0.3 2,892,858 - LRK53_RS13115 0.15 -1.2 2,892,858 - LRK53_RS13115 0.15 -2.7 2,892,858 - LRK53_RS13115 0.15 -0.0 2,892,942 - LRK53_RS13115 0.57 -0.5 2,893,030 + -2.9 2,893,030 + -0.6 2,893,030 + -2.1 2,893,030 + -2.6 2,893,030 + +0.8 2,893,030 + -0.2 2,893,030 + -1.5 2,893,030 + -0.7 2,893,031 - -0.6 2,893,031 - -0.7 2,893,031 - -0.5 2,893,031 - +1.0 2,893,031 - -1.4 2,893,031 - +0.9 2,893,031 - -0.4 2,893,031 - -1.7 2,893,031 - -1.2 2,893,031 - -1.0 2,893,031 - -1.2 2,893,031 - -0.3 2,893,048 + -1.4 2,893,048 + +1.6 2,893,048 + -1.9 2,893,048 + +0.0 2,893,048 + -0.9 2,893,048 + -1.2 2,893,048 + +0.7 2,893,048 + -0.2 2,893,048 + +0.6 2,893,048 + +0.0 2,893,048 + -0.3 2,893,048 + -0.6 2,893,048 + -0.6 2,893,048 + -0.3 2,893,048 + +1.7 2,893,048 + -1.1 2,893,048 + +1.1 2,893,048 + -0.9 2,893,049 - -0.7 2,893,049 - -0.7 2,893,049 - -1.0 2,893,049 - -1.4 2,893,049 - -0.2 2,893,049 - -1.6 2,893,049 - +0.1 2,893,049 - +0.3 2,893,049 - +0.6 2,893,049 - -0.7 2,893,049 - +1.3 2,893,049 - -0.5 2,893,049 - -1.3 2,893,049 - -0.3 2,893,127 + -0.3 2,893,127 + -0.3 2,893,127 + -0.3 2,893,127 + -0.9 2,893,127 + -0.6 2,893,127 + -0.6 2,893,127 + +1.0 2,893,127 + -0.5 2,893,127 + +1.1 2,893,127 + +1.9 2,893,127 + -2.2 2,893,127 + -1.5 2,893,127 + -1.7 2,893,127 + -1.2 2,893,127 + -1.4 2,893,127 + -2.3 2,893,127 + -1.0 2,893,127 + +0.9 2,893,127 + -0.6 2,893,127 + -1.3 2,893,127 + -1.3 2,893,127 + -1.4 2,893,127 + -0.5 2,893,127 + -0.5 2,893,127 + -1.7 2,893,127 + -1.0 2,893,128 - -0.5 2,893,128 - -2.3 2,893,128 - -0.4 2,893,128 - -0.3 2,893,128 - -0.8 2,893,128 - +0.3 2,893,128 - -0.4 2,893,128 - -2.2 2,893,128 - -2.0 2,893,128 - -1.2 2,893,128 - -1.7 2,893,128 - -0.6 2,893,128 - -0.6 2,893,128 - -0.9 2,893,128 - -0.6 2,893,128 - -0.1 2,893,128 - -0.9 2,893,128 - -0.3 2,893,128 - -0.0 2,893,128 - -1.9 2,893,128 - +0.1 2,893,128 - +0.4 2,893,128 - +0.1 2,893,128 - -1.4 2,893,128 - -0.7 2,893,128 - -0.5 2,893,128 - -3.0 2,893,128 - +0.3 2,893,128 - -2.4 2,893,128 - -1.6 2,893,128 - -1.0 2,893,128 - -0.1 2,893,128 - -1.3 2,893,736 + LRK53_RS13120 0.69 -0.5 2,893,736 + LRK53_RS13120 0.69 -2.6 2,893,736 + LRK53_RS13120 0.69 -0.9 2,893,736 + LRK53_RS13120 0.69 -0.8 2,893,736 + LRK53_RS13120 0.69 -1.1 2,893,736 + LRK53_RS13120 0.69 +2.1 2,893,736 + LRK53_RS13120 0.69 -0.7 2,893,736 + LRK53_RS13120 0.69 -1.1 2,893,737 - LRK53_RS13120 0.70 -0.7 2,893,737 - LRK53_RS13120 0.70 -0.4 2,893,737 - LRK53_RS13120 0.70 -1.0 2,893,737 - LRK53_RS13120 0.70 -2.1 2,893,737 - LRK53_RS13120 0.70 -1.9 2,893,737 - LRK53_RS13120 0.70 -1.2 2,893,737 - LRK53_RS13120 0.70 -0.9 2,893,737 - LRK53_RS13120 0.70 -0.2 2,893,737 - LRK53_RS13120 0.70 -1.6 2,893,737 - LRK53_RS13120 0.70 -0.2 2,893,737 - LRK53_RS13120 0.70 -0.3 2,893,737 - LRK53_RS13120 0.70 -2.6 2,893,737 - LRK53_RS13120 0.70 -1.1 2,893,742 + LRK53_RS13120 0.70 +0.3 2,893,742 + LRK53_RS13120 0.70 -2.0 2,893,742 + LRK53_RS13120 0.70 -0.7 2,893,742 + LRK53_RS13120 0.70 -1.1 2,893,742 + LRK53_RS13120 0.70 -1.9 2,893,743 - LRK53_RS13120 0.70 -1.2 2,893,743 - LRK53_RS13120 0.70 -0.1 2,893,743 - LRK53_RS13120 0.70 -1.0 2,893,743 - LRK53_RS13120 0.70 +0.6 2,893,743 - LRK53_RS13120 0.70 +0.4 2,893,743 - LRK53_RS13120 0.70 -0.9 2,894,013 + +0.0 2,894,014 - -1.8 2,894,014 - -0.0 2,894,014 - -1.5
Or see this region's nucleotide sequence