Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13115

Experiment: Planktonic; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS13110 and LRK53_RS13115 overlap by 11 nucleotidesLRK53_RS13115 and LRK53_RS13120 are separated by 12 nucleotides LRK53_RS13110: LRK53_RS13110 - FUSC family protein, at 2,890,690 to 2,892,837 _RS13110 LRK53_RS13115: LRK53_RS13115 - DUF1656 domain-containing protein, at 2,892,827 to 2,893,027 _RS13115 LRK53_RS13120: LRK53_RS13120 - HlyD family secretion protein, at 2,893,040 to 2,894,041 _RS13120 Position (kb) 2892 2893 2894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2892.070 kb on + strand, within LRK53_RS13110at 2892.070 kb on + strand, within LRK53_RS13110at 2892.071 kb on - strand, within LRK53_RS13110at 2892.071 kb on - strand, within LRK53_RS13110at 2892.071 kb on - strand, within LRK53_RS13110at 2892.071 kb on - strand, within LRK53_RS13110at 2892.071 kb on - strand, within LRK53_RS13110at 2892.071 kb on - strand, within LRK53_RS13110at 2892.097 kb on + strand, within LRK53_RS13110at 2892.098 kb on - strand, within LRK53_RS13110at 2892.145 kb on + strand, within LRK53_RS13110at 2892.145 kb on + strand, within LRK53_RS13110at 2892.145 kb on + strand, within LRK53_RS13110at 2892.145 kb on + strand, within LRK53_RS13110at 2892.145 kb on + strand, within LRK53_RS13110at 2892.145 kb on + strand, within LRK53_RS13110at 2892.146 kb on - strand, within LRK53_RS13110at 2892.146 kb on - strand, within LRK53_RS13110at 2892.146 kb on - strand, within LRK53_RS13110at 2892.146 kb on - strand, within LRK53_RS13110at 2892.146 kb on - strand, within LRK53_RS13110at 2892.146 kb on - strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.250 kb on + strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.251 kb on - strand, within LRK53_RS13110at 2892.631 kb on + strandat 2892.632 kb on - strandat 2892.833 kb on + strandat 2892.833 kb on + strandat 2892.833 kb on + strandat 2892.833 kb on + strandat 2892.834 kb on - strandat 2892.834 kb on - strandat 2892.834 kb on - strandat 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.857 kb on + strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.858 kb on - strand, within LRK53_RS13115at 2892.942 kb on - strand, within LRK53_RS13115at 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.030 kb on + strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.031 kb on - strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.048 kb on + strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.049 kb on - strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.127 kb on + strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.128 kb on - strandat 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.736 kb on + strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.737 kb on - strand, within LRK53_RS13120at 2893.742 kb on + strand, within LRK53_RS13120at 2893.742 kb on + strand, within LRK53_RS13120at 2893.742 kb on + strand, within LRK53_RS13120at 2893.742 kb on + strand, within LRK53_RS13120at 2893.742 kb on + strand, within LRK53_RS13120at 2893.743 kb on - strand, within LRK53_RS13120at 2893.743 kb on - strand, within LRK53_RS13120at 2893.743 kb on - strand, within LRK53_RS13120at 2893.743 kb on - strand, within LRK53_RS13120at 2893.743 kb on - strand, within LRK53_RS13120at 2893.743 kb on - strand, within LRK53_RS13120at 2894.013 kb on + strandat 2894.014 kb on - strandat 2894.014 kb on - strandat 2894.014 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
remove
2,892,070 + LRK53_RS13110 0.64 -1.5
2,892,070 + LRK53_RS13110 0.64 -0.3
2,892,071 - LRK53_RS13110 0.64 -2.1
2,892,071 - LRK53_RS13110 0.64 +0.4
2,892,071 - LRK53_RS13110 0.64 -1.3
2,892,071 - LRK53_RS13110 0.64 +1.2
2,892,071 - LRK53_RS13110 0.64 -0.7
2,892,071 - LRK53_RS13110 0.64 -0.7
2,892,097 + LRK53_RS13110 0.66 -1.2
2,892,098 - LRK53_RS13110 0.66 -0.2
2,892,145 + LRK53_RS13110 0.68 -1.5
2,892,145 + LRK53_RS13110 0.68 -2.2
2,892,145 + LRK53_RS13110 0.68 -2.2
2,892,145 + LRK53_RS13110 0.68 -0.4
2,892,145 + LRK53_RS13110 0.68 -1.1
2,892,145 + LRK53_RS13110 0.68 +0.4
2,892,146 - LRK53_RS13110 0.68 -0.3
2,892,146 - LRK53_RS13110 0.68 -0.7
2,892,146 - LRK53_RS13110 0.68 -1.1
2,892,146 - LRK53_RS13110 0.68 +0.3
2,892,146 - LRK53_RS13110 0.68 +0.1
2,892,146 - LRK53_RS13110 0.68 -0.5
2,892,250 + LRK53_RS13110 0.73 -1.6
2,892,250 + LRK53_RS13110 0.73 -0.5
2,892,250 + LRK53_RS13110 0.73 -0.8
2,892,250 + LRK53_RS13110 0.73 -0.6
2,892,250 + LRK53_RS13110 0.73 -0.7
2,892,250 + LRK53_RS13110 0.73 -0.9
2,892,250 + LRK53_RS13110 0.73 -0.3
2,892,250 + LRK53_RS13110 0.73 -0.6
2,892,250 + LRK53_RS13110 0.73 -1.0
2,892,250 + LRK53_RS13110 0.73 -1.4
2,892,250 + LRK53_RS13110 0.73 -0.9
2,892,250 + LRK53_RS13110 0.73 -1.8
2,892,250 + LRK53_RS13110 0.73 +1.3
2,892,250 + LRK53_RS13110 0.73 +0.2
2,892,250 + LRK53_RS13110 0.73 +0.7
2,892,250 + LRK53_RS13110 0.73 -1.5
2,892,251 - LRK53_RS13110 0.73 -1.2
2,892,251 - LRK53_RS13110 0.73 -0.3
2,892,251 - LRK53_RS13110 0.73 -0.1
2,892,251 - LRK53_RS13110 0.73 -1.1
2,892,251 - LRK53_RS13110 0.73 +0.2
2,892,251 - LRK53_RS13110 0.73 -0.3
2,892,251 - LRK53_RS13110 0.73 +0.6
2,892,251 - LRK53_RS13110 0.73 -0.5
2,892,251 - LRK53_RS13110 0.73 -2.0
2,892,251 - LRK53_RS13110 0.73 +1.7
2,892,251 - LRK53_RS13110 0.73 +0.4
2,892,631 + -0.5
2,892,632 - -0.7
2,892,833 + -0.9
2,892,833 + -1.1
2,892,833 + -0.5
2,892,833 + -1.3
2,892,834 - -1.2
2,892,834 - +0.3
2,892,834 - -1.5
2,892,857 + LRK53_RS13115 0.15 -1.0
2,892,857 + LRK53_RS13115 0.15 -1.5
2,892,857 + LRK53_RS13115 0.15 +0.3
2,892,857 + LRK53_RS13115 0.15 -0.9
2,892,857 + LRK53_RS13115 0.15 +0.4
2,892,857 + LRK53_RS13115 0.15 +0.1
2,892,857 + LRK53_RS13115 0.15 +0.7
2,892,857 + LRK53_RS13115 0.15 +0.7
2,892,857 + LRK53_RS13115 0.15 +0.4
2,892,857 + LRK53_RS13115 0.15 -1.0
2,892,857 + LRK53_RS13115 0.15 +0.2
2,892,857 + LRK53_RS13115 0.15 -1.1
2,892,857 + LRK53_RS13115 0.15 -2.0
2,892,857 + LRK53_RS13115 0.15 -1.5
2,892,857 + LRK53_RS13115 0.15 -1.4
2,892,857 + LRK53_RS13115 0.15 -2.3
2,892,857 + LRK53_RS13115 0.15 -1.4
2,892,858 - LRK53_RS13115 0.15 -2.5
2,892,858 - LRK53_RS13115 0.15 -0.5
2,892,858 - LRK53_RS13115 0.15 +0.2
2,892,858 - LRK53_RS13115 0.15 -0.0
2,892,858 - LRK53_RS13115 0.15 -1.2
2,892,858 - LRK53_RS13115 0.15 -1.9
2,892,858 - LRK53_RS13115 0.15 -0.3
2,892,858 - LRK53_RS13115 0.15 -1.2
2,892,858 - LRK53_RS13115 0.15 -2.7
2,892,858 - LRK53_RS13115 0.15 -0.0
2,892,942 - LRK53_RS13115 0.57 -0.5
2,893,030 + -2.9
2,893,030 + -0.6
2,893,030 + -2.1
2,893,030 + -2.6
2,893,030 + +0.8
2,893,030 + -0.2
2,893,030 + -1.5
2,893,030 + -0.7
2,893,031 - -0.6
2,893,031 - -0.7
2,893,031 - -0.5
2,893,031 - +1.0
2,893,031 - -1.4
2,893,031 - +0.9
2,893,031 - -0.4
2,893,031 - -1.7
2,893,031 - -1.2
2,893,031 - -1.0
2,893,031 - -1.2
2,893,031 - -0.3
2,893,048 + -1.4
2,893,048 + +1.6
2,893,048 + -1.9
2,893,048 + +0.0
2,893,048 + -0.9
2,893,048 + -1.2
2,893,048 + +0.7
2,893,048 + -0.2
2,893,048 + +0.6
2,893,048 + +0.0
2,893,048 + -0.3
2,893,048 + -0.6
2,893,048 + -0.6
2,893,048 + -0.3
2,893,048 + +1.7
2,893,048 + -1.1
2,893,048 + +1.1
2,893,048 + -0.9
2,893,049 - -0.7
2,893,049 - -0.7
2,893,049 - -1.0
2,893,049 - -1.4
2,893,049 - -0.2
2,893,049 - -1.6
2,893,049 - +0.1
2,893,049 - +0.3
2,893,049 - +0.6
2,893,049 - -0.7
2,893,049 - +1.3
2,893,049 - -0.5
2,893,049 - -1.3
2,893,049 - -0.3
2,893,127 + -0.3
2,893,127 + -0.3
2,893,127 + -0.3
2,893,127 + -0.9
2,893,127 + -0.6
2,893,127 + -0.6
2,893,127 + +1.0
2,893,127 + -0.5
2,893,127 + +1.1
2,893,127 + +1.9
2,893,127 + -2.2
2,893,127 + -1.5
2,893,127 + -1.7
2,893,127 + -1.2
2,893,127 + -1.4
2,893,127 + -2.3
2,893,127 + -1.0
2,893,127 + +0.9
2,893,127 + -0.6
2,893,127 + -1.3
2,893,127 + -1.3
2,893,127 + -1.4
2,893,127 + -0.5
2,893,127 + -0.5
2,893,127 + -1.7
2,893,127 + -1.0
2,893,128 - -0.5
2,893,128 - -2.3
2,893,128 - -0.4
2,893,128 - -0.3
2,893,128 - -0.8
2,893,128 - +0.3
2,893,128 - -0.4
2,893,128 - -2.2
2,893,128 - -2.0
2,893,128 - -1.2
2,893,128 - -1.7
2,893,128 - -0.6
2,893,128 - -0.6
2,893,128 - -0.9
2,893,128 - -0.6
2,893,128 - -0.1
2,893,128 - -0.9
2,893,128 - -0.3
2,893,128 - -0.0
2,893,128 - -1.9
2,893,128 - +0.1
2,893,128 - +0.4
2,893,128 - +0.1
2,893,128 - -1.4
2,893,128 - -0.7
2,893,128 - -0.5
2,893,128 - -3.0
2,893,128 - +0.3
2,893,128 - -2.4
2,893,128 - -1.6
2,893,128 - -1.0
2,893,128 - -0.1
2,893,128 - -1.3
2,893,736 + LRK53_RS13120 0.69 -0.5
2,893,736 + LRK53_RS13120 0.69 -2.6
2,893,736 + LRK53_RS13120 0.69 -0.9
2,893,736 + LRK53_RS13120 0.69 -0.8
2,893,736 + LRK53_RS13120 0.69 -1.1
2,893,736 + LRK53_RS13120 0.69 +2.1
2,893,736 + LRK53_RS13120 0.69 -0.7
2,893,736 + LRK53_RS13120 0.69 -1.1
2,893,737 - LRK53_RS13120 0.70 -0.7
2,893,737 - LRK53_RS13120 0.70 -0.4
2,893,737 - LRK53_RS13120 0.70 -1.0
2,893,737 - LRK53_RS13120 0.70 -2.1
2,893,737 - LRK53_RS13120 0.70 -1.9
2,893,737 - LRK53_RS13120 0.70 -1.2
2,893,737 - LRK53_RS13120 0.70 -0.9
2,893,737 - LRK53_RS13120 0.70 -0.2
2,893,737 - LRK53_RS13120 0.70 -1.6
2,893,737 - LRK53_RS13120 0.70 -0.2
2,893,737 - LRK53_RS13120 0.70 -0.3
2,893,737 - LRK53_RS13120 0.70 -2.6
2,893,737 - LRK53_RS13120 0.70 -1.1
2,893,742 + LRK53_RS13120 0.70 +0.3
2,893,742 + LRK53_RS13120 0.70 -2.0
2,893,742 + LRK53_RS13120 0.70 -0.7
2,893,742 + LRK53_RS13120 0.70 -1.1
2,893,742 + LRK53_RS13120 0.70 -1.9
2,893,743 - LRK53_RS13120 0.70 -1.2
2,893,743 - LRK53_RS13120 0.70 -0.1
2,893,743 - LRK53_RS13120 0.70 -1.0
2,893,743 - LRK53_RS13120 0.70 +0.6
2,893,743 - LRK53_RS13120 0.70 +0.4
2,893,743 - LRK53_RS13120 0.70 -0.9
2,894,013 + +0.0
2,894,014 - -1.8
2,894,014 - -0.0
2,894,014 - -1.5

Or see this region's nucleotide sequence