Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11680 and LRK53_RS11685 are separated by 87 nucleotides LRK53_RS11685 and LRK53_RS11690 are separated by 49 nucleotides LRK53_RS11690 and LRK53_RS11695 overlap by 4 nucleotides
LRK53_RS11680: LRK53_RS11680 - integrase, at 2,602,284 to 2,603,699
_RS11680
LRK53_RS11685: LRK53_RS11685 - tRNA-Ser, at 2,603,787 to 2,603,876
_RS11685
LRK53_RS11690: LRK53_RS11690 - hypothetical protein, at 2,603,926 to 2,604,309
_RS11690
LRK53_RS11695: LRK53_RS11695 - serine--tRNA ligase, at 2,604,306 to 2,605,586
_RS11695
Position (kb)
2603
2604
2605 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2602.927 kb on + strand, within LRK53_RS11680 at 2602.927 kb on + strand, within LRK53_RS11680 at 2602.927 kb on + strand, within LRK53_RS11680 at 2602.927 kb on + strand, within LRK53_RS11680 at 2602.928 kb on - strand, within LRK53_RS11680 at 2602.975 kb on + strand, within LRK53_RS11680 at 2602.978 kb on + strand, within LRK53_RS11680 at 2602.979 kb on - strand, within LRK53_RS11680 at 2603.017 kb on + strand, within LRK53_RS11680 at 2603.017 kb on + strand, within LRK53_RS11680 at 2603.017 kb on + strand, within LRK53_RS11680 at 2603.017 kb on + strand, within LRK53_RS11680 at 2603.017 kb on + strand, within LRK53_RS11680 at 2603.018 kb on - strand, within LRK53_RS11680 at 2603.018 kb on - strand, within LRK53_RS11680 at 2603.018 kb on - strand, within LRK53_RS11680 at 2603.018 kb on - strand, within LRK53_RS11680 at 2603.018 kb on - strand, within LRK53_RS11680 at 2603.018 kb on - strand, within LRK53_RS11680 at 2603.128 kb on + strand, within LRK53_RS11680 at 2603.128 kb on + strand, within LRK53_RS11680 at 2603.128 kb on + strand, within LRK53_RS11680 at 2603.128 kb on + strand, within LRK53_RS11680 at 2603.128 kb on + strand, within LRK53_RS11680 at 2603.129 kb on - strand, within LRK53_RS11680 at 2603.129 kb on - strand, within LRK53_RS11680 at 2603.129 kb on - strand, within LRK53_RS11680 at 2603.129 kb on - strand, within LRK53_RS11680 at 2603.267 kb on + strand, within LRK53_RS11680 at 2603.317 kb on + strand, within LRK53_RS11680 at 2603.318 kb on - strand, within LRK53_RS11680 at 2603.342 kb on + strand, within LRK53_RS11680 at 2603.431 kb on + strand, within LRK53_RS11680 at 2603.431 kb on + strand, within LRK53_RS11680 at 2603.431 kb on + strand, within LRK53_RS11680 at 2603.431 kb on + strand, within LRK53_RS11680 at 2603.431 kb on + strand, within LRK53_RS11680 at 2603.432 kb on - strand, within LRK53_RS11680 at 2603.432 kb on - strand, within LRK53_RS11680 at 2603.432 kb on - strand, within LRK53_RS11680 at 2603.432 kb on - strand, within LRK53_RS11680 at 2603.432 kb on - strand, within LRK53_RS11680 at 2603.472 kb on + strand, within LRK53_RS11680 at 2603.472 kb on + strand, within LRK53_RS11680 at 2603.473 kb on - strand, within LRK53_RS11680 at 2603.473 kb on - strand, within LRK53_RS11680 at 2603.473 kb on - strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.483 kb on + strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.484 kb on - strand, within LRK53_RS11680 at 2603.487 kb on + strand, within LRK53_RS11680 at 2603.487 kb on + strand, within LRK53_RS11680 at 2603.487 kb on + strand, within LRK53_RS11680 at 2603.487 kb on + strand, within LRK53_RS11680 at 2603.487 kb on + strand, within LRK53_RS11680 at 2603.487 kb on + strand, within LRK53_RS11680 at 2603.488 kb on - strand, within LRK53_RS11680 at 2603.488 kb on - strand, within LRK53_RS11680 at 2603.488 kb on - strand, within LRK53_RS11680 at 2603.488 kb on - strand, within LRK53_RS11680 at 2603.530 kb on + strand, within LRK53_RS11680 at 2603.530 kb on + strand, within LRK53_RS11680 at 2603.530 kb on + strand, within LRK53_RS11680 at 2603.530 kb on + strand, within LRK53_RS11680 at 2603.530 kb on + strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.531 kb on - strand, within LRK53_RS11680 at 2603.609 kb on + strand at 2603.609 kb on + strand at 2603.610 kb on - strand at 2603.610 kb on - strand at 2603.683 kb on + strand at 2603.683 kb on + strand at 2603.684 kb on - strand at 2603.699 kb on + strand at 2603.720 kb on + strand at 2603.720 kb on + strand at 2603.721 kb on - strand at 2603.721 kb on - strand at 2603.721 kb on - strand at 2603.721 kb on - strand at 2603.721 kb on - strand at 2603.925 kb on - strand at 2604.034 kb on + strand, within LRK53_RS11690 at 2604.034 kb on + strand, within LRK53_RS11690 at 2604.194 kb on - strand, within LRK53_RS11690 at 2604.194 kb on - strand, within LRK53_RS11690 at 2604.194 kb on - strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.260 kb on + strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690 at 2604.261 kb on - strand, within LRK53_RS11690
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 2,602,927 + LRK53_RS11680 0.45 -1.4 2,602,927 + LRK53_RS11680 0.45 -1.4 2,602,927 + LRK53_RS11680 0.45 +0.3 2,602,927 + LRK53_RS11680 0.45 -1.3 2,602,928 - LRK53_RS11680 0.45 -0.4 2,602,975 + LRK53_RS11680 0.49 +0.1 2,602,978 + LRK53_RS11680 0.49 -0.7 2,602,979 - LRK53_RS11680 0.49 +1.5 2,603,017 + LRK53_RS11680 0.52 -2.8 2,603,017 + LRK53_RS11680 0.52 -0.3 2,603,017 + LRK53_RS11680 0.52 -0.7 2,603,017 + LRK53_RS11680 0.52 -0.1 2,603,017 + LRK53_RS11680 0.52 -2.0 2,603,018 - LRK53_RS11680 0.52 +1.2 2,603,018 - LRK53_RS11680 0.52 -0.0 2,603,018 - LRK53_RS11680 0.52 +1.4 2,603,018 - LRK53_RS11680 0.52 +1.9 2,603,018 - LRK53_RS11680 0.52 +0.1 2,603,018 - LRK53_RS11680 0.52 -2.1 2,603,128 + LRK53_RS11680 0.60 -1.3 2,603,128 + LRK53_RS11680 0.60 -0.4 2,603,128 + LRK53_RS11680 0.60 -0.8 2,603,128 + LRK53_RS11680 0.60 -1.2 2,603,128 + LRK53_RS11680 0.60 -1.2 2,603,129 - LRK53_RS11680 0.60 -0.2 2,603,129 - LRK53_RS11680 0.60 -2.1 2,603,129 - LRK53_RS11680 0.60 -0.8 2,603,129 - LRK53_RS11680 0.60 -1.5 2,603,267 + LRK53_RS11680 0.69 -1.0 2,603,317 + LRK53_RS11680 0.73 -1.3 2,603,318 - LRK53_RS11680 0.73 +0.0 2,603,342 + LRK53_RS11680 0.75 -1.2 2,603,431 + LRK53_RS11680 0.81 -0.2 2,603,431 + LRK53_RS11680 0.81 -0.6 2,603,431 + LRK53_RS11680 0.81 +0.8 2,603,431 + LRK53_RS11680 0.81 -2.2 2,603,431 + LRK53_RS11680 0.81 -1.5 2,603,432 - LRK53_RS11680 0.81 -0.6 2,603,432 - LRK53_RS11680 0.81 -3.3 2,603,432 - LRK53_RS11680 0.81 +0.3 2,603,432 - LRK53_RS11680 0.81 -0.4 2,603,432 - LRK53_RS11680 0.81 -1.8 2,603,472 + LRK53_RS11680 0.84 +1.7 2,603,472 + LRK53_RS11680 0.84 -1.2 2,603,473 - LRK53_RS11680 0.84 -0.4 2,603,473 - LRK53_RS11680 0.84 -0.9 2,603,473 - LRK53_RS11680 0.84 -0.8 2,603,483 + LRK53_RS11680 0.85 -1.8 2,603,483 + LRK53_RS11680 0.85 -0.5 2,603,483 + LRK53_RS11680 0.85 -0.9 2,603,483 + LRK53_RS11680 0.85 +0.3 2,603,483 + LRK53_RS11680 0.85 -1.2 2,603,483 + LRK53_RS11680 0.85 +0.6 2,603,483 + LRK53_RS11680 0.85 +0.5 2,603,483 + LRK53_RS11680 0.85 -1.4 2,603,483 + LRK53_RS11680 0.85 -1.2 2,603,483 + LRK53_RS11680 0.85 -1.5 2,603,483 + LRK53_RS11680 0.85 -0.6 2,603,483 + LRK53_RS11680 0.85 +1.2 2,603,483 + LRK53_RS11680 0.85 +0.7 2,603,483 + LRK53_RS11680 0.85 -0.6 2,603,483 + LRK53_RS11680 0.85 -0.3 2,603,483 + LRK53_RS11680 0.85 -0.8 2,603,483 + LRK53_RS11680 0.85 -1.2 2,603,483 + LRK53_RS11680 0.85 -1.5 2,603,483 + LRK53_RS11680 0.85 -2.7 2,603,483 + LRK53_RS11680 0.85 -0.3 2,603,483 + LRK53_RS11680 0.85 -0.9 2,603,484 - LRK53_RS11680 0.85 -1.1 2,603,484 - LRK53_RS11680 0.85 -2.2 2,603,484 - LRK53_RS11680 0.85 -0.8 2,603,484 - LRK53_RS11680 0.85 -0.4 2,603,484 - LRK53_RS11680 0.85 -1.5 2,603,484 - LRK53_RS11680 0.85 -0.2 2,603,484 - LRK53_RS11680 0.85 -1.0 2,603,484 - LRK53_RS11680 0.85 -0.6 2,603,484 - LRK53_RS11680 0.85 -0.9 2,603,484 - LRK53_RS11680 0.85 -0.7 2,603,487 + LRK53_RS11680 0.85 +0.1 2,603,487 + LRK53_RS11680 0.85 -0.4 2,603,487 + LRK53_RS11680 0.85 -1.2 2,603,487 + LRK53_RS11680 0.85 -0.9 2,603,487 + LRK53_RS11680 0.85 -0.9 2,603,487 + LRK53_RS11680 0.85 -1.2 2,603,488 - LRK53_RS11680 0.85 -1.4 2,603,488 - LRK53_RS11680 0.85 +0.6 2,603,488 - LRK53_RS11680 0.85 +0.8 2,603,488 - LRK53_RS11680 0.85 -0.8 2,603,530 + LRK53_RS11680 0.88 +0.1 2,603,530 + LRK53_RS11680 0.88 +0.7 2,603,530 + LRK53_RS11680 0.88 -0.2 2,603,530 + LRK53_RS11680 0.88 -0.2 2,603,530 + LRK53_RS11680 0.88 +0.9 2,603,531 - LRK53_RS11680 0.88 +0.4 2,603,531 - LRK53_RS11680 0.88 -0.6 2,603,531 - LRK53_RS11680 0.88 +0.4 2,603,531 - LRK53_RS11680 0.88 -0.3 2,603,531 - LRK53_RS11680 0.88 -0.0 2,603,531 - LRK53_RS11680 0.88 -0.5 2,603,531 - LRK53_RS11680 0.88 -1.9 2,603,531 - LRK53_RS11680 0.88 -0.6 2,603,531 - LRK53_RS11680 0.88 -2.0 2,603,531 - LRK53_RS11680 0.88 +1.0 2,603,609 + -0.7 2,603,609 + +0.7 2,603,610 - -1.0 2,603,610 - +1.3 2,603,683 + -0.5 2,603,683 + +1.3 2,603,684 - -0.3 2,603,699 + -2.2 2,603,720 + -0.5 2,603,720 + -0.3 2,603,721 - -0.6 2,603,721 - +0.1 2,603,721 - -0.9 2,603,721 - -0.8 2,603,721 - -0.2 2,603,925 - +0.1 2,604,034 + LRK53_RS11690 0.28 -0.8 2,604,034 + LRK53_RS11690 0.28 -1.3 2,604,194 - LRK53_RS11690 0.70 -2.0 2,604,194 - LRK53_RS11690 0.70 -1.6 2,604,194 - LRK53_RS11690 0.70 +1.2 2,604,260 + LRK53_RS11690 0.87 +1.2 2,604,260 + LRK53_RS11690 0.87 -0.1 2,604,260 + LRK53_RS11690 0.87 -0.8 2,604,260 + LRK53_RS11690 0.87 -1.5 2,604,260 + LRK53_RS11690 0.87 -2.2 2,604,260 + LRK53_RS11690 0.87 +0.2 2,604,260 + LRK53_RS11690 0.87 -0.4 2,604,260 + LRK53_RS11690 0.87 -1.3 2,604,260 + LRK53_RS11690 0.87 -2.6 2,604,260 + LRK53_RS11690 0.87 -0.8 2,604,260 + LRK53_RS11690 0.87 -1.2 2,604,260 + LRK53_RS11690 0.87 -1.2 2,604,261 - LRK53_RS11690 0.87 -3.0 2,604,261 - LRK53_RS11690 0.87 -0.2 2,604,261 - LRK53_RS11690 0.87 -0.3 2,604,261 - LRK53_RS11690 0.87 -0.8 2,604,261 - LRK53_RS11690 0.87 -1.6 2,604,261 - LRK53_RS11690 0.87 +0.2 2,604,261 - LRK53_RS11690 0.87 +0.7 2,604,261 - LRK53_RS11690 0.87 -0.2
Or see this region's nucleotide sequence