Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS11230

Experiment: Planktonic; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS11225 and LRK53_RS11230 are separated by 787 nucleotidesLRK53_RS11230 and LRK53_RS11235 are separated by 231 nucleotides LRK53_RS11225: LRK53_RS11225 - hypothetical protein, at 2,505,274 to 2,506,281 _RS11225 LRK53_RS11230: LRK53_RS11230 - hypothetical protein, at 2,507,069 to 2,508,184 _RS11230 LRK53_RS11235: LRK53_RS11235 - SDR family oxidoreductase, at 2,508,416 to 2,509,984 _RS11235 Position (kb) 2507 2508 2509Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2506.133 kb on + strand, within LRK53_RS11225at 2506.134 kb on - strand, within LRK53_RS11225at 2506.134 kb on - strand, within LRK53_RS11225at 2506.134 kb on - strand, within LRK53_RS11225at 2506.134 kb on - strand, within LRK53_RS11225at 2506.214 kb on + strandat 2506.215 kb on - strandat 2506.215 kb on - strandat 2506.215 kb on - strandat 2506.215 kb on - strandat 2506.220 kb on + strandat 2506.220 kb on + strandat 2506.220 kb on + strandat 2506.220 kb on + strandat 2506.220 kb on + strandat 2506.220 kb on + strandat 2506.221 kb on - strandat 2506.221 kb on - strandat 2506.221 kb on - strandat 2506.221 kb on - strandat 2506.221 kb on - strandat 2506.435 kb on + strandat 2506.435 kb on + strandat 2506.435 kb on + strandat 2506.435 kb on + strandat 2506.436 kb on - strandat 2506.436 kb on - strandat 2506.436 kb on - strandat 2506.436 kb on - strandat 2506.460 kb on + strandat 2506.604 kb on + strandat 2506.604 kb on + strandat 2506.604 kb on + strandat 2506.604 kb on + strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.605 kb on - strandat 2506.748 kb on + strandat 2506.748 kb on + strandat 2506.748 kb on + strandat 2506.769 kb on + strandat 2506.769 kb on + strandat 2506.769 kb on + strandat 2506.769 kb on + strandat 2506.770 kb on - strandat 2506.770 kb on - strandat 2506.770 kb on - strandat 2506.871 kb on + strandat 2506.871 kb on + strandat 2506.871 kb on + strandat 2506.925 kb on + strandat 2506.925 kb on + strandat 2506.926 kb on - strandat 2506.926 kb on - strandat 2506.926 kb on - strandat 2507.024 kb on + strandat 2507.024 kb on + strandat 2507.024 kb on + strandat 2507.024 kb on + strandat 2507.024 kb on + strandat 2507.024 kb on + strandat 2507.024 kb on + strandat 2507.025 kb on - strandat 2507.025 kb on - strandat 2507.025 kb on - strandat 2507.025 kb on - strandat 2507.025 kb on - strandat 2507.025 kb on - strandat 2507.025 kb on - strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.027 kb on + strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.028 kb on - strandat 2507.102 kb on + strandat 2507.102 kb on + strandat 2507.102 kb on + strandat 2507.102 kb on + strandat 2507.102 kb on + strandat 2507.102 kb on + strandat 2507.103 kb on - strandat 2507.103 kb on - strandat 2507.103 kb on - strandat 2507.103 kb on - strandat 2507.103 kb on - strandat 2507.103 kb on - strandat 2507.103 kb on - strandat 2507.397 kb on + strand, within LRK53_RS11230at 2507.397 kb on + strand, within LRK53_RS11230at 2507.397 kb on + strand, within LRK53_RS11230at 2507.397 kb on + strand, within LRK53_RS11230at 2507.398 kb on - strand, within LRK53_RS11230at 2507.398 kb on - strand, within LRK53_RS11230at 2507.523 kb on + strand, within LRK53_RS11230at 2507.523 kb on + strand, within LRK53_RS11230at 2507.524 kb on - strand, within LRK53_RS11230at 2507.524 kb on - strand, within LRK53_RS11230at 2507.727 kb on + strand, within LRK53_RS11230at 2507.728 kb on - strand, within LRK53_RS11230at 2507.805 kb on + strand, within LRK53_RS11230at 2507.934 kb on + strand, within LRK53_RS11230at 2507.934 kb on + strand, within LRK53_RS11230at 2507.934 kb on + strand, within LRK53_RS11230at 2507.945 kb on + strand, within LRK53_RS11230at 2507.945 kb on + strand, within LRK53_RS11230at 2507.945 kb on + strand, within LRK53_RS11230at 2507.946 kb on - strand, within LRK53_RS11230at 2507.946 kb on - strand, within LRK53_RS11230at 2507.946 kb on - strand, within LRK53_RS11230at 2507.946 kb on - strand, within LRK53_RS11230at 2507.962 kb on + strand, within LRK53_RS11230at 2507.962 kb on + strand, within LRK53_RS11230at 2507.963 kb on - strand, within LRK53_RS11230at 2507.963 kb on - strand, within LRK53_RS11230at 2507.963 kb on - strand, within LRK53_RS11230at 2507.963 kb on - strand, within LRK53_RS11230at 2508.049 kb on + strand, within LRK53_RS11230at 2508.300 kb on + strandat 2508.300 kb on + strandat 2508.300 kb on + strandat 2508.300 kb on + strandat 2508.301 kb on - strandat 2508.367 kb on + strandat 2508.367 kb on + strandat 2508.367 kb on + strandat 2508.367 kb on + strandat 2508.368 kb on - strandat 2508.368 kb on - strandat 2508.397 kb on + strandat 2508.398 kb on - strandat 2508.398 kb on - strandat 2508.454 kb on + strandat 2508.454 kb on + strandat 2508.454 kb on + strandat 2508.454 kb on + strandat 2508.454 kb on + strandat 2508.455 kb on - strandat 2508.587 kb on + strand, within LRK53_RS11235at 2508.587 kb on + strand, within LRK53_RS11235at 2508.587 kb on + strand, within LRK53_RS11235at 2508.587 kb on + strand, within LRK53_RS11235at 2508.587 kb on + strand, within LRK53_RS11235at 2508.587 kb on + strand, within LRK53_RS11235at 2508.587 kb on + strand, within LRK53_RS11235at 2508.588 kb on - strand, within LRK53_RS11235at 2508.644 kb on + strand, within LRK53_RS11235at 2508.644 kb on + strand, within LRK53_RS11235at 2508.644 kb on + strand, within LRK53_RS11235at 2508.644 kb on + strand, within LRK53_RS11235at 2508.644 kb on + strand, within LRK53_RS11235at 2508.644 kb on + strand, within LRK53_RS11235at 2508.645 kb on - strand, within LRK53_RS11235at 2508.645 kb on - strand, within LRK53_RS11235at 2508.645 kb on - strand, within LRK53_RS11235at 2508.710 kb on - strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.824 kb on + strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.825 kb on - strand, within LRK53_RS11235at 2508.842 kb on + strand, within LRK53_RS11235at 2508.842 kb on + strand, within LRK53_RS11235at 2508.842 kb on + strand, within LRK53_RS11235at 2508.842 kb on + strand, within LRK53_RS11235at 2508.842 kb on + strand, within LRK53_RS11235at 2508.842 kb on + strand, within LRK53_RS11235at 2508.843 kb on - strand, within LRK53_RS11235at 2508.843 kb on - strand, within LRK53_RS11235at 2508.843 kb on - strand, within LRK53_RS11235at 2508.843 kb on - strand, within LRK53_RS11235at 2508.843 kb on - strand, within LRK53_RS11235at 2508.843 kb on - strand, within LRK53_RS11235at 2508.863 kb on + strand, within LRK53_RS11235at 2508.863 kb on + strand, within LRK53_RS11235at 2508.863 kb on + strand, within LRK53_RS11235at 2508.863 kb on + strand, within LRK53_RS11235at 2508.864 kb on - strand, within LRK53_RS11235at 2508.864 kb on - strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.899 kb on + strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.900 kb on - strand, within LRK53_RS11235at 2508.974 kb on + strand, within LRK53_RS11235at 2509.055 kb on + strand, within LRK53_RS11235at 2509.103 kb on + strand, within LRK53_RS11235at 2509.103 kb on + strand, within LRK53_RS11235at 2509.104 kb on - strand, within LRK53_RS11235

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
remove
2,506,133 + LRK53_RS11225 0.85 +1.1
2,506,134 - LRK53_RS11225 0.85 -0.7
2,506,134 - LRK53_RS11225 0.85 -1.8
2,506,134 - LRK53_RS11225 0.85 +1.2
2,506,134 - LRK53_RS11225 0.85 -1.2
2,506,214 + -0.1
2,506,215 - -0.2
2,506,215 - -1.7
2,506,215 - +0.9
2,506,215 - -0.2
2,506,220 + -0.9
2,506,220 + -1.7
2,506,220 + +0.4
2,506,220 + -1.2
2,506,220 + -0.6
2,506,220 + -0.2
2,506,221 - +0.5
2,506,221 - +0.5
2,506,221 - -0.7
2,506,221 - -0.4
2,506,221 - -0.5
2,506,435 + -2.2
2,506,435 + -0.3
2,506,435 + +1.8
2,506,435 + +0.1
2,506,436 - -0.6
2,506,436 - +0.8
2,506,436 - -0.1
2,506,436 - -0.1
2,506,460 + +0.2
2,506,604 + -1.7
2,506,604 + -0.4
2,506,604 + -0.9
2,506,604 + -1.1
2,506,605 - +0.7
2,506,605 - -0.4
2,506,605 - -0.3
2,506,605 - -0.9
2,506,605 - -1.3
2,506,605 - +0.8
2,506,605 - -0.1
2,506,605 - +0.8
2,506,605 - -0.2
2,506,605 - +0.2
2,506,605 - +0.4
2,506,605 - -0.1
2,506,748 + -0.9
2,506,748 + -0.7
2,506,748 + -1.1
2,506,769 + -1.0
2,506,769 + +0.8
2,506,769 + +0.3
2,506,769 + -1.4
2,506,770 - -0.7
2,506,770 - -3.0
2,506,770 - -0.4
2,506,871 + +0.1
2,506,871 + -0.3
2,506,871 + -0.7
2,506,925 + +1.0
2,506,925 + -0.6
2,506,926 - -1.7
2,506,926 - +0.6
2,506,926 - -0.4
2,507,024 + -0.9
2,507,024 + +0.3
2,507,024 + -1.7
2,507,024 + -0.7
2,507,024 + -0.3
2,507,024 + +0.6
2,507,024 + +0.5
2,507,025 - +0.2
2,507,025 - -0.4
2,507,025 - -0.7
2,507,025 - -0.7
2,507,025 - -1.5
2,507,025 - -1.8
2,507,025 - -0.7
2,507,027 + -1.2
2,507,027 + -1.2
2,507,027 + +0.1
2,507,027 + -0.7
2,507,027 + +1.1
2,507,027 + -3.0
2,507,027 + -0.4
2,507,027 + +1.1
2,507,028 - -1.1
2,507,028 - +0.3
2,507,028 - +1.3
2,507,028 - -0.7
2,507,028 - -1.1
2,507,028 - -0.5
2,507,028 - -0.5
2,507,028 - -0.2
2,507,102 + -0.1
2,507,102 + -0.2
2,507,102 + -0.8
2,507,102 + -1.8
2,507,102 + -0.5
2,507,102 + +0.3
2,507,103 - -0.7
2,507,103 - +0.4
2,507,103 - -0.9
2,507,103 - -2.4
2,507,103 - +0.1
2,507,103 - +1.0
2,507,103 - -0.5
2,507,397 + LRK53_RS11230 0.29 -1.5
2,507,397 + LRK53_RS11230 0.29 -0.6
2,507,397 + LRK53_RS11230 0.29 -0.2
2,507,397 + LRK53_RS11230 0.29 -0.6
2,507,398 - LRK53_RS11230 0.29 -1.2
2,507,398 - LRK53_RS11230 0.29 -0.8
2,507,523 + LRK53_RS11230 0.41 -1.5
2,507,523 + LRK53_RS11230 0.41 -0.8
2,507,524 - LRK53_RS11230 0.41 +1.7
2,507,524 - LRK53_RS11230 0.41 -0.5
2,507,727 + LRK53_RS11230 0.59 -1.4
2,507,728 - LRK53_RS11230 0.59 -0.7
2,507,805 + LRK53_RS11230 0.66 -0.1
2,507,934 + LRK53_RS11230 0.78 -0.2
2,507,934 + LRK53_RS11230 0.78 -1.4
2,507,934 + LRK53_RS11230 0.78 -1.0
2,507,945 + LRK53_RS11230 0.78 -1.1
2,507,945 + LRK53_RS11230 0.78 -1.6
2,507,945 + LRK53_RS11230 0.78 +1.3
2,507,946 - LRK53_RS11230 0.79 -1.2
2,507,946 - LRK53_RS11230 0.79 -1.1
2,507,946 - LRK53_RS11230 0.79 -1.1
2,507,946 - LRK53_RS11230 0.79 -2.1
2,507,962 + LRK53_RS11230 0.80 -1.2
2,507,962 + LRK53_RS11230 0.80 -0.4
2,507,963 - LRK53_RS11230 0.80 +0.1
2,507,963 - LRK53_RS11230 0.80 +0.1
2,507,963 - LRK53_RS11230 0.80 -1.6
2,507,963 - LRK53_RS11230 0.80 -0.7
2,508,049 + LRK53_RS11230 0.88 -1.5
2,508,300 + +1.1
2,508,300 + -1.4
2,508,300 + -1.7
2,508,300 + +0.4
2,508,301 - -1.9
2,508,367 + -0.8
2,508,367 + +0.8
2,508,367 + -1.3
2,508,367 + -0.5
2,508,368 - -0.4
2,508,368 - +0.6
2,508,397 + -2.8
2,508,398 - -1.2
2,508,398 - +0.2
2,508,454 + -1.9
2,508,454 + +0.7
2,508,454 + -1.2
2,508,454 + +0.2
2,508,454 + -1.2
2,508,455 - -0.1
2,508,587 + LRK53_RS11235 0.11 +1.2
2,508,587 + LRK53_RS11235 0.11 -1.4
2,508,587 + LRK53_RS11235 0.11 -1.3
2,508,587 + LRK53_RS11235 0.11 -1.1
2,508,587 + LRK53_RS11235 0.11 -0.3
2,508,587 + LRK53_RS11235 0.11 +0.3
2,508,587 + LRK53_RS11235 0.11 -1.8
2,508,588 - LRK53_RS11235 0.11 -1.0
2,508,644 + LRK53_RS11235 0.15 -0.3
2,508,644 + LRK53_RS11235 0.15 -1.3
2,508,644 + LRK53_RS11235 0.15 -0.5
2,508,644 + LRK53_RS11235 0.15 -3.0
2,508,644 + LRK53_RS11235 0.15 -0.9
2,508,644 + LRK53_RS11235 0.15 -1.5
2,508,645 - LRK53_RS11235 0.15 +0.1
2,508,645 - LRK53_RS11235 0.15 -0.9
2,508,645 - LRK53_RS11235 0.15 +0.8
2,508,710 - LRK53_RS11235 0.19 +1.5
2,508,824 + LRK53_RS11235 0.26 -3.4
2,508,824 + LRK53_RS11235 0.26 -2.0
2,508,824 + LRK53_RS11235 0.26 -0.8
2,508,824 + LRK53_RS11235 0.26 -0.9
2,508,824 + LRK53_RS11235 0.26 -1.8
2,508,824 + LRK53_RS11235 0.26 +0.5
2,508,824 + LRK53_RS11235 0.26 -1.4
2,508,824 + LRK53_RS11235 0.26 -0.1
2,508,824 + LRK53_RS11235 0.26 -0.5
2,508,824 + LRK53_RS11235 0.26 +0.2
2,508,824 + LRK53_RS11235 0.26 +0.2
2,508,824 + LRK53_RS11235 0.26 -1.4
2,508,824 + LRK53_RS11235 0.26 -0.6
2,508,824 + LRK53_RS11235 0.26 +0.7
2,508,825 - LRK53_RS11235 0.26 -0.4
2,508,825 - LRK53_RS11235 0.26 -0.7
2,508,825 - LRK53_RS11235 0.26 -1.8
2,508,825 - LRK53_RS11235 0.26 -0.0
2,508,825 - LRK53_RS11235 0.26 -1.1
2,508,825 - LRK53_RS11235 0.26 -2.6
2,508,825 - LRK53_RS11235 0.26 +0.1
2,508,825 - LRK53_RS11235 0.26 -1.5
2,508,825 - LRK53_RS11235 0.26 +0.4
2,508,825 - LRK53_RS11235 0.26 -0.8
2,508,825 - LRK53_RS11235 0.26 -1.1
2,508,842 + LRK53_RS11235 0.27 +0.3
2,508,842 + LRK53_RS11235 0.27 -1.2
2,508,842 + LRK53_RS11235 0.27 -0.1
2,508,842 + LRK53_RS11235 0.27 -0.7
2,508,842 + LRK53_RS11235 0.27 -1.7
2,508,842 + LRK53_RS11235 0.27 +1.0
2,508,843 - LRK53_RS11235 0.27 -2.0
2,508,843 - LRK53_RS11235 0.27 +0.1
2,508,843 - LRK53_RS11235 0.27 -0.3
2,508,843 - LRK53_RS11235 0.27 -0.2
2,508,843 - LRK53_RS11235 0.27 +0.6
2,508,843 - LRK53_RS11235 0.27 -0.9
2,508,863 + LRK53_RS11235 0.28 -0.3
2,508,863 + LRK53_RS11235 0.28 -1.2
2,508,863 + LRK53_RS11235 0.28 -1.2
2,508,863 + LRK53_RS11235 0.28 +0.5
2,508,864 - LRK53_RS11235 0.29 +0.8
2,508,864 - LRK53_RS11235 0.29 +0.5
2,508,899 + LRK53_RS11235 0.31 -1.2
2,508,899 + LRK53_RS11235 0.31 -3.6
2,508,899 + LRK53_RS11235 0.31 -2.2
2,508,899 + LRK53_RS11235 0.31 -1.3
2,508,899 + LRK53_RS11235 0.31 -1.0
2,508,899 + LRK53_RS11235 0.31 -0.7
2,508,899 + LRK53_RS11235 0.31 -2.6
2,508,900 - LRK53_RS11235 0.31 +1.1
2,508,900 - LRK53_RS11235 0.31 +0.5
2,508,900 - LRK53_RS11235 0.31 -0.7
2,508,900 - LRK53_RS11235 0.31 +0.5
2,508,900 - LRK53_RS11235 0.31 -0.7
2,508,900 - LRK53_RS11235 0.31 -1.8
2,508,900 - LRK53_RS11235 0.31 -2.2
2,508,900 - LRK53_RS11235 0.31 -0.8
2,508,900 - LRK53_RS11235 0.31 -0.1
2,508,900 - LRK53_RS11235 0.31 -0.3
2,508,900 - LRK53_RS11235 0.31 -3.0
2,508,900 - LRK53_RS11235 0.31 -1.1
2,508,974 + LRK53_RS11235 0.36 +0.5
2,509,055 + LRK53_RS11235 0.41 -1.2
2,509,103 + LRK53_RS11235 0.44 +0.1
2,509,103 + LRK53_RS11235 0.44 +0.2
2,509,104 - LRK53_RS11235 0.44 -0.0

Or see this region's nucleotide sequence