Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS11225 and LRK53_RS11230 are separated by 787 nucleotides LRK53_RS11230 and LRK53_RS11235 are separated by 231 nucleotides
LRK53_RS11225: LRK53_RS11225 - hypothetical protein, at 2,505,274 to 2,506,281
_RS11225
LRK53_RS11230: LRK53_RS11230 - hypothetical protein, at 2,507,069 to 2,508,184
_RS11230
LRK53_RS11235: LRK53_RS11235 - SDR family oxidoreductase, at 2,508,416 to 2,509,984
_RS11235
Position (kb)
2507
2508
2509 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2506.133 kb on + strand, within LRK53_RS11225 at 2506.134 kb on - strand, within LRK53_RS11225 at 2506.134 kb on - strand, within LRK53_RS11225 at 2506.134 kb on - strand, within LRK53_RS11225 at 2506.134 kb on - strand, within LRK53_RS11225 at 2506.214 kb on + strand at 2506.215 kb on - strand at 2506.215 kb on - strand at 2506.215 kb on - strand at 2506.215 kb on - strand at 2506.220 kb on + strand at 2506.220 kb on + strand at 2506.220 kb on + strand at 2506.220 kb on + strand at 2506.220 kb on + strand at 2506.220 kb on + strand at 2506.221 kb on - strand at 2506.221 kb on - strand at 2506.221 kb on - strand at 2506.221 kb on - strand at 2506.221 kb on - strand at 2506.435 kb on + strand at 2506.435 kb on + strand at 2506.435 kb on + strand at 2506.435 kb on + strand at 2506.436 kb on - strand at 2506.436 kb on - strand at 2506.436 kb on - strand at 2506.436 kb on - strand at 2506.460 kb on + strand at 2506.604 kb on + strand at 2506.604 kb on + strand at 2506.604 kb on + strand at 2506.604 kb on + strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.605 kb on - strand at 2506.748 kb on + strand at 2506.748 kb on + strand at 2506.748 kb on + strand at 2506.769 kb on + strand at 2506.769 kb on + strand at 2506.769 kb on + strand at 2506.769 kb on + strand at 2506.770 kb on - strand at 2506.770 kb on - strand at 2506.770 kb on - strand at 2506.871 kb on + strand at 2506.871 kb on + strand at 2506.871 kb on + strand at 2506.925 kb on + strand at 2506.925 kb on + strand at 2506.926 kb on - strand at 2506.926 kb on - strand at 2506.926 kb on - strand at 2507.024 kb on + strand at 2507.024 kb on + strand at 2507.024 kb on + strand at 2507.024 kb on + strand at 2507.024 kb on + strand at 2507.024 kb on + strand at 2507.024 kb on + strand at 2507.025 kb on - strand at 2507.025 kb on - strand at 2507.025 kb on - strand at 2507.025 kb on - strand at 2507.025 kb on - strand at 2507.025 kb on - strand at 2507.025 kb on - strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.027 kb on + strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.028 kb on - strand at 2507.102 kb on + strand at 2507.102 kb on + strand at 2507.102 kb on + strand at 2507.102 kb on + strand at 2507.102 kb on + strand at 2507.102 kb on + strand at 2507.103 kb on - strand at 2507.103 kb on - strand at 2507.103 kb on - strand at 2507.103 kb on - strand at 2507.103 kb on - strand at 2507.103 kb on - strand at 2507.103 kb on - strand at 2507.397 kb on + strand, within LRK53_RS11230 at 2507.397 kb on + strand, within LRK53_RS11230 at 2507.397 kb on + strand, within LRK53_RS11230 at 2507.397 kb on + strand, within LRK53_RS11230 at 2507.398 kb on - strand, within LRK53_RS11230 at 2507.398 kb on - strand, within LRK53_RS11230 at 2507.523 kb on + strand, within LRK53_RS11230 at 2507.523 kb on + strand, within LRK53_RS11230 at 2507.524 kb on - strand, within LRK53_RS11230 at 2507.524 kb on - strand, within LRK53_RS11230 at 2507.727 kb on + strand, within LRK53_RS11230 at 2507.728 kb on - strand, within LRK53_RS11230 at 2507.805 kb on + strand, within LRK53_RS11230 at 2507.934 kb on + strand, within LRK53_RS11230 at 2507.934 kb on + strand, within LRK53_RS11230 at 2507.934 kb on + strand, within LRK53_RS11230 at 2507.945 kb on + strand, within LRK53_RS11230 at 2507.945 kb on + strand, within LRK53_RS11230 at 2507.945 kb on + strand, within LRK53_RS11230 at 2507.946 kb on - strand, within LRK53_RS11230 at 2507.946 kb on - strand, within LRK53_RS11230 at 2507.946 kb on - strand, within LRK53_RS11230 at 2507.946 kb on - strand, within LRK53_RS11230 at 2507.962 kb on + strand, within LRK53_RS11230 at 2507.962 kb on + strand, within LRK53_RS11230 at 2507.963 kb on - strand, within LRK53_RS11230 at 2507.963 kb on - strand, within LRK53_RS11230 at 2507.963 kb on - strand, within LRK53_RS11230 at 2507.963 kb on - strand, within LRK53_RS11230 at 2508.049 kb on + strand, within LRK53_RS11230 at 2508.300 kb on + strand at 2508.300 kb on + strand at 2508.300 kb on + strand at 2508.300 kb on + strand at 2508.301 kb on - strand at 2508.367 kb on + strand at 2508.367 kb on + strand at 2508.367 kb on + strand at 2508.367 kb on + strand at 2508.368 kb on - strand at 2508.368 kb on - strand at 2508.397 kb on + strand at 2508.398 kb on - strand at 2508.398 kb on - strand at 2508.454 kb on + strand at 2508.454 kb on + strand at 2508.454 kb on + strand at 2508.454 kb on + strand at 2508.454 kb on + strand at 2508.455 kb on - strand at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.587 kb on + strand, within LRK53_RS11235 at 2508.588 kb on - strand, within LRK53_RS11235 at 2508.644 kb on + strand, within LRK53_RS11235 at 2508.644 kb on + strand, within LRK53_RS11235 at 2508.644 kb on + strand, within LRK53_RS11235 at 2508.644 kb on + strand, within LRK53_RS11235 at 2508.644 kb on + strand, within LRK53_RS11235 at 2508.644 kb on + strand, within LRK53_RS11235 at 2508.645 kb on - strand, within LRK53_RS11235 at 2508.645 kb on - strand, within LRK53_RS11235 at 2508.645 kb on - strand, within LRK53_RS11235 at 2508.710 kb on - strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.824 kb on + strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.825 kb on - strand, within LRK53_RS11235 at 2508.842 kb on + strand, within LRK53_RS11235 at 2508.842 kb on + strand, within LRK53_RS11235 at 2508.842 kb on + strand, within LRK53_RS11235 at 2508.842 kb on + strand, within LRK53_RS11235 at 2508.842 kb on + strand, within LRK53_RS11235 at 2508.842 kb on + strand, within LRK53_RS11235 at 2508.843 kb on - strand, within LRK53_RS11235 at 2508.843 kb on - strand, within LRK53_RS11235 at 2508.843 kb on - strand, within LRK53_RS11235 at 2508.843 kb on - strand, within LRK53_RS11235 at 2508.843 kb on - strand, within LRK53_RS11235 at 2508.843 kb on - strand, within LRK53_RS11235 at 2508.863 kb on + strand, within LRK53_RS11235 at 2508.863 kb on + strand, within LRK53_RS11235 at 2508.863 kb on + strand, within LRK53_RS11235 at 2508.863 kb on + strand, within LRK53_RS11235 at 2508.864 kb on - strand, within LRK53_RS11235 at 2508.864 kb on - strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.899 kb on + strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.900 kb on - strand, within LRK53_RS11235 at 2508.974 kb on + strand, within LRK53_RS11235 at 2509.055 kb on + strand, within LRK53_RS11235 at 2509.103 kb on + strand, within LRK53_RS11235 at 2509.103 kb on + strand, within LRK53_RS11235 at 2509.104 kb on - strand, within LRK53_RS11235
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 2,506,133 + LRK53_RS11225 0.85 +1.1 2,506,134 - LRK53_RS11225 0.85 -0.7 2,506,134 - LRK53_RS11225 0.85 -1.8 2,506,134 - LRK53_RS11225 0.85 +1.2 2,506,134 - LRK53_RS11225 0.85 -1.2 2,506,214 + -0.1 2,506,215 - -0.2 2,506,215 - -1.7 2,506,215 - +0.9 2,506,215 - -0.2 2,506,220 + -0.9 2,506,220 + -1.7 2,506,220 + +0.4 2,506,220 + -1.2 2,506,220 + -0.6 2,506,220 + -0.2 2,506,221 - +0.5 2,506,221 - +0.5 2,506,221 - -0.7 2,506,221 - -0.4 2,506,221 - -0.5 2,506,435 + -2.2 2,506,435 + -0.3 2,506,435 + +1.8 2,506,435 + +0.1 2,506,436 - -0.6 2,506,436 - +0.8 2,506,436 - -0.1 2,506,436 - -0.1 2,506,460 + +0.2 2,506,604 + -1.7 2,506,604 + -0.4 2,506,604 + -0.9 2,506,604 + -1.1 2,506,605 - +0.7 2,506,605 - -0.4 2,506,605 - -0.3 2,506,605 - -0.9 2,506,605 - -1.3 2,506,605 - +0.8 2,506,605 - -0.1 2,506,605 - +0.8 2,506,605 - -0.2 2,506,605 - +0.2 2,506,605 - +0.4 2,506,605 - -0.1 2,506,748 + -0.9 2,506,748 + -0.7 2,506,748 + -1.1 2,506,769 + -1.0 2,506,769 + +0.8 2,506,769 + +0.3 2,506,769 + -1.4 2,506,770 - -0.7 2,506,770 - -3.0 2,506,770 - -0.4 2,506,871 + +0.1 2,506,871 + -0.3 2,506,871 + -0.7 2,506,925 + +1.0 2,506,925 + -0.6 2,506,926 - -1.7 2,506,926 - +0.6 2,506,926 - -0.4 2,507,024 + -0.9 2,507,024 + +0.3 2,507,024 + -1.7 2,507,024 + -0.7 2,507,024 + -0.3 2,507,024 + +0.6 2,507,024 + +0.5 2,507,025 - +0.2 2,507,025 - -0.4 2,507,025 - -0.7 2,507,025 - -0.7 2,507,025 - -1.5 2,507,025 - -1.8 2,507,025 - -0.7 2,507,027 + -1.2 2,507,027 + -1.2 2,507,027 + +0.1 2,507,027 + -0.7 2,507,027 + +1.1 2,507,027 + -3.0 2,507,027 + -0.4 2,507,027 + +1.1 2,507,028 - -1.1 2,507,028 - +0.3 2,507,028 - +1.3 2,507,028 - -0.7 2,507,028 - -1.1 2,507,028 - -0.5 2,507,028 - -0.5 2,507,028 - -0.2 2,507,102 + -0.1 2,507,102 + -0.2 2,507,102 + -0.8 2,507,102 + -1.8 2,507,102 + -0.5 2,507,102 + +0.3 2,507,103 - -0.7 2,507,103 - +0.4 2,507,103 - -0.9 2,507,103 - -2.4 2,507,103 - +0.1 2,507,103 - +1.0 2,507,103 - -0.5 2,507,397 + LRK53_RS11230 0.29 -1.5 2,507,397 + LRK53_RS11230 0.29 -0.6 2,507,397 + LRK53_RS11230 0.29 -0.2 2,507,397 + LRK53_RS11230 0.29 -0.6 2,507,398 - LRK53_RS11230 0.29 -1.2 2,507,398 - LRK53_RS11230 0.29 -0.8 2,507,523 + LRK53_RS11230 0.41 -1.5 2,507,523 + LRK53_RS11230 0.41 -0.8 2,507,524 - LRK53_RS11230 0.41 +1.7 2,507,524 - LRK53_RS11230 0.41 -0.5 2,507,727 + LRK53_RS11230 0.59 -1.4 2,507,728 - LRK53_RS11230 0.59 -0.7 2,507,805 + LRK53_RS11230 0.66 -0.1 2,507,934 + LRK53_RS11230 0.78 -0.2 2,507,934 + LRK53_RS11230 0.78 -1.4 2,507,934 + LRK53_RS11230 0.78 -1.0 2,507,945 + LRK53_RS11230 0.78 -1.1 2,507,945 + LRK53_RS11230 0.78 -1.6 2,507,945 + LRK53_RS11230 0.78 +1.3 2,507,946 - LRK53_RS11230 0.79 -1.2 2,507,946 - LRK53_RS11230 0.79 -1.1 2,507,946 - LRK53_RS11230 0.79 -1.1 2,507,946 - LRK53_RS11230 0.79 -2.1 2,507,962 + LRK53_RS11230 0.80 -1.2 2,507,962 + LRK53_RS11230 0.80 -0.4 2,507,963 - LRK53_RS11230 0.80 +0.1 2,507,963 - LRK53_RS11230 0.80 +0.1 2,507,963 - LRK53_RS11230 0.80 -1.6 2,507,963 - LRK53_RS11230 0.80 -0.7 2,508,049 + LRK53_RS11230 0.88 -1.5 2,508,300 + +1.1 2,508,300 + -1.4 2,508,300 + -1.7 2,508,300 + +0.4 2,508,301 - -1.9 2,508,367 + -0.8 2,508,367 + +0.8 2,508,367 + -1.3 2,508,367 + -0.5 2,508,368 - -0.4 2,508,368 - +0.6 2,508,397 + -2.8 2,508,398 - -1.2 2,508,398 - +0.2 2,508,454 + -1.9 2,508,454 + +0.7 2,508,454 + -1.2 2,508,454 + +0.2 2,508,454 + -1.2 2,508,455 - -0.1 2,508,587 + LRK53_RS11235 0.11 +1.2 2,508,587 + LRK53_RS11235 0.11 -1.4 2,508,587 + LRK53_RS11235 0.11 -1.3 2,508,587 + LRK53_RS11235 0.11 -1.1 2,508,587 + LRK53_RS11235 0.11 -0.3 2,508,587 + LRK53_RS11235 0.11 +0.3 2,508,587 + LRK53_RS11235 0.11 -1.8 2,508,588 - LRK53_RS11235 0.11 -1.0 2,508,644 + LRK53_RS11235 0.15 -0.3 2,508,644 + LRK53_RS11235 0.15 -1.3 2,508,644 + LRK53_RS11235 0.15 -0.5 2,508,644 + LRK53_RS11235 0.15 -3.0 2,508,644 + LRK53_RS11235 0.15 -0.9 2,508,644 + LRK53_RS11235 0.15 -1.5 2,508,645 - LRK53_RS11235 0.15 +0.1 2,508,645 - LRK53_RS11235 0.15 -0.9 2,508,645 - LRK53_RS11235 0.15 +0.8 2,508,710 - LRK53_RS11235 0.19 +1.5 2,508,824 + LRK53_RS11235 0.26 -3.4 2,508,824 + LRK53_RS11235 0.26 -2.0 2,508,824 + LRK53_RS11235 0.26 -0.8 2,508,824 + LRK53_RS11235 0.26 -0.9 2,508,824 + LRK53_RS11235 0.26 -1.8 2,508,824 + LRK53_RS11235 0.26 +0.5 2,508,824 + LRK53_RS11235 0.26 -1.4 2,508,824 + LRK53_RS11235 0.26 -0.1 2,508,824 + LRK53_RS11235 0.26 -0.5 2,508,824 + LRK53_RS11235 0.26 +0.2 2,508,824 + LRK53_RS11235 0.26 +0.2 2,508,824 + LRK53_RS11235 0.26 -1.4 2,508,824 + LRK53_RS11235 0.26 -0.6 2,508,824 + LRK53_RS11235 0.26 +0.7 2,508,825 - LRK53_RS11235 0.26 -0.4 2,508,825 - LRK53_RS11235 0.26 -0.7 2,508,825 - LRK53_RS11235 0.26 -1.8 2,508,825 - LRK53_RS11235 0.26 -0.0 2,508,825 - LRK53_RS11235 0.26 -1.1 2,508,825 - LRK53_RS11235 0.26 -2.6 2,508,825 - LRK53_RS11235 0.26 +0.1 2,508,825 - LRK53_RS11235 0.26 -1.5 2,508,825 - LRK53_RS11235 0.26 +0.4 2,508,825 - LRK53_RS11235 0.26 -0.8 2,508,825 - LRK53_RS11235 0.26 -1.1 2,508,842 + LRK53_RS11235 0.27 +0.3 2,508,842 + LRK53_RS11235 0.27 -1.2 2,508,842 + LRK53_RS11235 0.27 -0.1 2,508,842 + LRK53_RS11235 0.27 -0.7 2,508,842 + LRK53_RS11235 0.27 -1.7 2,508,842 + LRK53_RS11235 0.27 +1.0 2,508,843 - LRK53_RS11235 0.27 -2.0 2,508,843 - LRK53_RS11235 0.27 +0.1 2,508,843 - LRK53_RS11235 0.27 -0.3 2,508,843 - LRK53_RS11235 0.27 -0.2 2,508,843 - LRK53_RS11235 0.27 +0.6 2,508,843 - LRK53_RS11235 0.27 -0.9 2,508,863 + LRK53_RS11235 0.28 -0.3 2,508,863 + LRK53_RS11235 0.28 -1.2 2,508,863 + LRK53_RS11235 0.28 -1.2 2,508,863 + LRK53_RS11235 0.28 +0.5 2,508,864 - LRK53_RS11235 0.29 +0.8 2,508,864 - LRK53_RS11235 0.29 +0.5 2,508,899 + LRK53_RS11235 0.31 -1.2 2,508,899 + LRK53_RS11235 0.31 -3.6 2,508,899 + LRK53_RS11235 0.31 -2.2 2,508,899 + LRK53_RS11235 0.31 -1.3 2,508,899 + LRK53_RS11235 0.31 -1.0 2,508,899 + LRK53_RS11235 0.31 -0.7 2,508,899 + LRK53_RS11235 0.31 -2.6 2,508,900 - LRK53_RS11235 0.31 +1.1 2,508,900 - LRK53_RS11235 0.31 +0.5 2,508,900 - LRK53_RS11235 0.31 -0.7 2,508,900 - LRK53_RS11235 0.31 +0.5 2,508,900 - LRK53_RS11235 0.31 -0.7 2,508,900 - LRK53_RS11235 0.31 -1.8 2,508,900 - LRK53_RS11235 0.31 -2.2 2,508,900 - LRK53_RS11235 0.31 -0.8 2,508,900 - LRK53_RS11235 0.31 -0.1 2,508,900 - LRK53_RS11235 0.31 -0.3 2,508,900 - LRK53_RS11235 0.31 -3.0 2,508,900 - LRK53_RS11235 0.31 -1.1 2,508,974 + LRK53_RS11235 0.36 +0.5 2,509,055 + LRK53_RS11235 0.41 -1.2 2,509,103 + LRK53_RS11235 0.44 +0.1 2,509,103 + LRK53_RS11235 0.44 +0.2 2,509,104 - LRK53_RS11235 0.44 -0.0
Or see this region's nucleotide sequence