Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09610 and LRK53_RS09615 are separated by 348 nucleotides LRK53_RS09615 and LRK53_RS09620 are separated by 147 nucleotides LRK53_RS09620 and LRK53_RS09625 are separated by 193 nucleotides
LRK53_RS09610: LRK53_RS09610 - aminomethyl-transferring glycine dehydrogenase, at 2,159,195 to 2,162,083
_RS09610
LRK53_RS09615: LRK53_RS09615 - VOC family protein, at 2,162,432 to 2,162,836
_RS09615
LRK53_RS09620: LRK53_RS09620 - hypothetical protein, at 2,162,984 to 2,164,015
_RS09620
LRK53_RS09625: LRK53_RS09625 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 2,164,209 to 2,166,557
_RS09625
Position (kb)
2162
2163
2164
2165 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2162.233 kb on + strand at 2162.233 kb on + strand at 2162.234 kb on - strand at 2162.234 kb on - strand at 2162.234 kb on - strand at 2162.330 kb on + strand at 2162.330 kb on + strand at 2162.330 kb on + strand at 2162.330 kb on + strand at 2162.330 kb on + strand at 2162.330 kb on + strand at 2162.331 kb on - strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.332 kb on + strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.333 kb on - strand at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.501 kb on + strand, within LRK53_RS09615 at 2162.502 kb on - strand, within LRK53_RS09615 at 2162.502 kb on - strand, within LRK53_RS09615 at 2162.502 kb on - strand, within LRK53_RS09615 at 2162.502 kb on - strand, within LRK53_RS09615 at 2162.502 kb on - strand, within LRK53_RS09615 at 2162.684 kb on + strand, within LRK53_RS09615 at 2162.685 kb on - strand, within LRK53_RS09615 at 2162.732 kb on - strand, within LRK53_RS09615 at 2162.754 kb on - strand, within LRK53_RS09615 at 2162.783 kb on + strand, within LRK53_RS09615 at 2162.783 kb on + strand, within LRK53_RS09615 at 2162.783 kb on + strand, within LRK53_RS09615 at 2162.783 kb on + strand, within LRK53_RS09615 at 2162.783 kb on + strand, within LRK53_RS09615 at 2162.783 kb on + strand, within LRK53_RS09615 at 2162.784 kb on - strand, within LRK53_RS09615 at 2162.784 kb on - strand, within LRK53_RS09615 at 2162.784 kb on - strand, within LRK53_RS09615 at 2162.784 kb on - strand, within LRK53_RS09615 at 2162.784 kb on - strand, within LRK53_RS09615 at 2162.786 kb on - strand, within LRK53_RS09615 at 2162.789 kb on + strand, within LRK53_RS09615 at 2162.789 kb on + strand, within LRK53_RS09615 at 2162.789 kb on + strand, within LRK53_RS09615 at 2162.789 kb on + strand, within LRK53_RS09615 at 2162.790 kb on - strand, within LRK53_RS09615 at 2162.790 kb on - strand, within LRK53_RS09615 at 2162.790 kb on - strand, within LRK53_RS09615 at 2162.790 kb on - strand, within LRK53_RS09615 at 2162.835 kb on - strand at 2162.951 kb on + strand at 2162.951 kb on + strand at 2162.952 kb on - strand at 2162.952 kb on - strand at 2162.952 kb on - strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.960 kb on + strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2162.961 kb on - strand at 2163.055 kb on - strand at 2163.156 kb on - strand, within LRK53_RS09620 at 2163.156 kb on - strand, within LRK53_RS09620 at 2163.156 kb on - strand, within LRK53_RS09620 at 2163.156 kb on - strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.671 kb on + strand, within LRK53_RS09620 at 2163.813 kb on + strand, within LRK53_RS09620 at 2163.825 kb on - strand, within LRK53_RS09620 at 2163.825 kb on - strand, within LRK53_RS09620 at 2163.953 kb on + strand at 2163.953 kb on + strand at 2163.953 kb on + strand at 2163.953 kb on + strand at 2163.953 kb on + strand at 2163.953 kb on + strand at 2164.013 kb on + strand at 2164.013 kb on + strand at 2164.013 kb on + strand at 2164.013 kb on + strand at 2164.014 kb on - strand at 2164.014 kb on - strand at 2164.146 kb on + strand at 2164.146 kb on + strand at 2164.146 kb on + strand at 2164.147 kb on - strand at 2164.147 kb on - strand at 2164.147 kb on - strand at 2164.228 kb on + strand at 2164.240 kb on - strand at 2164.240 kb on - strand at 2164.585 kb on + strand, within LRK53_RS09625 at 2164.585 kb on + strand, within LRK53_RS09625 at 2164.585 kb on + strand, within LRK53_RS09625 at 2164.586 kb on - strand, within LRK53_RS09625 at 2164.586 kb on - strand, within LRK53_RS09625 at 2164.586 kb on - strand, within LRK53_RS09625 at 2164.586 kb on - strand, within LRK53_RS09625 at 2164.684 kb on + strand, within LRK53_RS09625 at 2164.684 kb on + strand, within LRK53_RS09625 at 2164.685 kb on - strand, within LRK53_RS09625 at 2164.685 kb on - strand, within LRK53_RS09625 at 2164.685 kb on - strand, within LRK53_RS09625 at 2164.699 kb on + strand, within LRK53_RS09625 at 2164.699 kb on + strand, within LRK53_RS09625 at 2164.699 kb on + strand, within LRK53_RS09625 at 2164.699 kb on + strand, within LRK53_RS09625 at 2164.700 kb on - strand, within LRK53_RS09625 at 2164.700 kb on - strand, within LRK53_RS09625 at 2164.700 kb on - strand, within LRK53_RS09625 at 2164.750 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.786 kb on + strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.787 kb on - strand, within LRK53_RS09625 at 2164.853 kb on + strand, within LRK53_RS09625 at 2164.853 kb on + strand, within LRK53_RS09625 at 2164.927 kb on + strand, within LRK53_RS09625 at 2164.927 kb on + strand, within LRK53_RS09625 at 2164.927 kb on + strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.928 kb on - strand, within LRK53_RS09625 at 2164.929 kb on + strand, within LRK53_RS09625 at 2164.929 kb on + strand, within LRK53_RS09625 at 2164.929 kb on + strand, within LRK53_RS09625 at 2164.929 kb on + strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.930 kb on - strand, within LRK53_RS09625 at 2164.970 kb on - strand, within LRK53_RS09625
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 2,162,233 + -0.4 2,162,233 + +2.4 2,162,234 - -1.3 2,162,234 - +0.3 2,162,234 - -0.8 2,162,330 + -2.1 2,162,330 + -2.9 2,162,330 + -0.4 2,162,330 + -0.9 2,162,330 + -0.9 2,162,330 + +0.4 2,162,331 - -0.5 2,162,332 + -0.7 2,162,332 + +1.2 2,162,332 + -0.9 2,162,332 + +0.6 2,162,332 + +0.5 2,162,332 + -0.6 2,162,332 + -0.3 2,162,332 + -0.5 2,162,332 + -0.5 2,162,332 + -1.7 2,162,332 + -1.1 2,162,333 - -0.2 2,162,333 - +0.4 2,162,333 - -2.0 2,162,333 - -1.3 2,162,333 - -0.7 2,162,333 - -1.3 2,162,333 - +0.1 2,162,333 - -1.1 2,162,501 + LRK53_RS09615 0.17 -0.9 2,162,501 + LRK53_RS09615 0.17 -1.0 2,162,501 + LRK53_RS09615 0.17 +0.8 2,162,501 + LRK53_RS09615 0.17 -1.9 2,162,501 + LRK53_RS09615 0.17 +1.6 2,162,501 + LRK53_RS09615 0.17 -2.1 2,162,501 + LRK53_RS09615 0.17 -0.6 2,162,501 + LRK53_RS09615 0.17 -0.2 2,162,501 + LRK53_RS09615 0.17 -0.0 2,162,502 - LRK53_RS09615 0.17 -1.6 2,162,502 - LRK53_RS09615 0.17 +1.6 2,162,502 - LRK53_RS09615 0.17 +0.2 2,162,502 - LRK53_RS09615 0.17 -1.2 2,162,502 - LRK53_RS09615 0.17 -0.6 2,162,684 + LRK53_RS09615 0.62 -1.4 2,162,685 - LRK53_RS09615 0.62 +0.3 2,162,732 - LRK53_RS09615 0.74 -0.6 2,162,754 - LRK53_RS09615 0.80 +1.4 2,162,783 + LRK53_RS09615 0.87 -1.4 2,162,783 + LRK53_RS09615 0.87 -0.6 2,162,783 + LRK53_RS09615 0.87 -0.3 2,162,783 + LRK53_RS09615 0.87 -3.5 2,162,783 + LRK53_RS09615 0.87 -1.3 2,162,783 + LRK53_RS09615 0.87 -2.6 2,162,784 - LRK53_RS09615 0.87 -0.5 2,162,784 - LRK53_RS09615 0.87 -0.4 2,162,784 - LRK53_RS09615 0.87 +0.6 2,162,784 - LRK53_RS09615 0.87 -0.5 2,162,784 - LRK53_RS09615 0.87 +1.4 2,162,786 - LRK53_RS09615 0.87 -0.3 2,162,789 + LRK53_RS09615 0.88 -1.4 2,162,789 + LRK53_RS09615 0.88 -1.8 2,162,789 + LRK53_RS09615 0.88 -0.8 2,162,789 + LRK53_RS09615 0.88 -0.9 2,162,790 - LRK53_RS09615 0.88 -1.4 2,162,790 - LRK53_RS09615 0.88 -0.3 2,162,790 - LRK53_RS09615 0.88 +0.5 2,162,790 - LRK53_RS09615 0.88 +1.0 2,162,835 - -0.3 2,162,951 + -1.0 2,162,951 + +0.5 2,162,952 - -1.2 2,162,952 - -2.7 2,162,952 - -0.3 2,162,960 + +0.5 2,162,960 + -0.8 2,162,960 + +0.5 2,162,960 + +0.4 2,162,960 + -1.1 2,162,960 + -1.4 2,162,960 + -0.2 2,162,960 + +0.2 2,162,961 - -0.6 2,162,961 - -1.3 2,162,961 - -2.0 2,162,961 - +1.4 2,162,961 - -1.2 2,162,961 - -1.5 2,162,961 - -1.9 2,162,961 - -1.6 2,163,055 - +0.0 2,163,156 - LRK53_RS09620 0.17 -0.6 2,163,156 - LRK53_RS09620 0.17 -1.5 2,163,156 - LRK53_RS09620 0.17 -2.2 2,163,156 - LRK53_RS09620 0.17 -1.0 2,163,671 + LRK53_RS09620 0.67 -0.5 2,163,671 + LRK53_RS09620 0.67 -1.7 2,163,671 + LRK53_RS09620 0.67 -0.4 2,163,671 + LRK53_RS09620 0.67 -1.3 2,163,671 + LRK53_RS09620 0.67 -1.5 2,163,671 + LRK53_RS09620 0.67 -0.8 2,163,671 + LRK53_RS09620 0.67 -0.3 2,163,813 + LRK53_RS09620 0.80 -0.4 2,163,825 - LRK53_RS09620 0.81 -1.1 2,163,825 - LRK53_RS09620 0.81 +0.4 2,163,953 + -0.3 2,163,953 + +0.9 2,163,953 + -0.8 2,163,953 + -1.7 2,163,953 + +0.1 2,163,953 + -0.6 2,164,013 + +1.2 2,164,013 + +0.1 2,164,013 + -1.2 2,164,013 + -1.6 2,164,014 - +0.7 2,164,014 - -1.3 2,164,146 + +1.1 2,164,146 + -0.2 2,164,146 + +0.6 2,164,147 - -2.0 2,164,147 - -0.9 2,164,147 - -3.6 2,164,228 + -0.1 2,164,240 - -0.4 2,164,240 - -1.8 2,164,585 + LRK53_RS09625 0.16 -0.6 2,164,585 + LRK53_RS09625 0.16 -1.2 2,164,585 + LRK53_RS09625 0.16 +1.4 2,164,586 - LRK53_RS09625 0.16 -1.3 2,164,586 - LRK53_RS09625 0.16 -0.6 2,164,586 - LRK53_RS09625 0.16 -2.6 2,164,586 - LRK53_RS09625 0.16 +0.0 2,164,684 + LRK53_RS09625 0.20 -0.5 2,164,684 + LRK53_RS09625 0.20 +0.9 2,164,685 - LRK53_RS09625 0.20 -0.7 2,164,685 - LRK53_RS09625 0.20 -0.0 2,164,685 - LRK53_RS09625 0.20 -1.0 2,164,699 + LRK53_RS09625 0.21 -0.2 2,164,699 + LRK53_RS09625 0.21 +1.2 2,164,699 + LRK53_RS09625 0.21 -0.8 2,164,699 + LRK53_RS09625 0.21 -0.8 2,164,700 - LRK53_RS09625 0.21 -1.5 2,164,700 - LRK53_RS09625 0.21 +0.2 2,164,700 - LRK53_RS09625 0.21 -1.0 2,164,750 + LRK53_RS09625 0.23 -0.7 2,164,786 + LRK53_RS09625 0.25 -3.0 2,164,786 + LRK53_RS09625 0.25 -1.4 2,164,786 + LRK53_RS09625 0.25 -1.0 2,164,786 + LRK53_RS09625 0.25 +0.6 2,164,786 + LRK53_RS09625 0.25 +0.1 2,164,786 + LRK53_RS09625 0.25 -1.4 2,164,786 + LRK53_RS09625 0.25 -0.5 2,164,786 + LRK53_RS09625 0.25 -0.7 2,164,787 - LRK53_RS09625 0.25 +0.2 2,164,787 - LRK53_RS09625 0.25 -1.5 2,164,787 - LRK53_RS09625 0.25 +1.0 2,164,787 - LRK53_RS09625 0.25 +1.5 2,164,787 - LRK53_RS09625 0.25 -0.6 2,164,787 - LRK53_RS09625 0.25 -0.5 2,164,787 - LRK53_RS09625 0.25 +0.7 2,164,787 - LRK53_RS09625 0.25 -1.0 2,164,787 - LRK53_RS09625 0.25 +0.4 2,164,853 + LRK53_RS09625 0.27 -1.6 2,164,853 + LRK53_RS09625 0.27 +0.4 2,164,927 + LRK53_RS09625 0.31 +0.4 2,164,927 + LRK53_RS09625 0.31 +0.4 2,164,927 + LRK53_RS09625 0.31 -0.8 2,164,928 - LRK53_RS09625 0.31 -0.7 2,164,928 - LRK53_RS09625 0.31 +1.7 2,164,928 - LRK53_RS09625 0.31 -0.6 2,164,928 - LRK53_RS09625 0.31 -1.8 2,164,928 - LRK53_RS09625 0.31 -1.5 2,164,928 - LRK53_RS09625 0.31 -1.4 2,164,928 - LRK53_RS09625 0.31 -0.2 2,164,929 + LRK53_RS09625 0.31 +0.3 2,164,929 + LRK53_RS09625 0.31 -1.3 2,164,929 + LRK53_RS09625 0.31 -1.3 2,164,929 + LRK53_RS09625 0.31 -0.6 2,164,930 - LRK53_RS09625 0.31 -0.6 2,164,930 - LRK53_RS09625 0.31 -2.4 2,164,930 - LRK53_RS09625 0.31 +0.6 2,164,930 - LRK53_RS09625 0.31 -1.1 2,164,930 - LRK53_RS09625 0.31 -1.0 2,164,930 - LRK53_RS09625 0.31 -2.5 2,164,930 - LRK53_RS09625 0.31 -0.2 2,164,930 - LRK53_RS09625 0.31 -0.1 2,164,930 - LRK53_RS09625 0.31 -2.7 2,164,970 - LRK53_RS09625 0.32 -0.9
Or see this region's nucleotide sequence