Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09620

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09610 and LRK53_RS09615 are separated by 348 nucleotidesLRK53_RS09615 and LRK53_RS09620 are separated by 147 nucleotidesLRK53_RS09620 and LRK53_RS09625 are separated by 193 nucleotides LRK53_RS09610: LRK53_RS09610 - aminomethyl-transferring glycine dehydrogenase, at 2,159,195 to 2,162,083 _RS09610 LRK53_RS09615: LRK53_RS09615 - VOC family protein, at 2,162,432 to 2,162,836 _RS09615 LRK53_RS09620: LRK53_RS09620 - hypothetical protein, at 2,162,984 to 2,164,015 _RS09620 LRK53_RS09625: LRK53_RS09625 - glycoside hydrolase family 3 C-terminal domain-containing protein, at 2,164,209 to 2,166,557 _RS09625 Position (kb) 2162 2163 2164 2165Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2162.233 kb on + strandat 2162.233 kb on + strandat 2162.234 kb on - strandat 2162.234 kb on - strandat 2162.234 kb on - strandat 2162.330 kb on + strandat 2162.330 kb on + strandat 2162.330 kb on + strandat 2162.330 kb on + strandat 2162.330 kb on + strandat 2162.330 kb on + strandat 2162.331 kb on - strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.332 kb on + strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.333 kb on - strandat 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.501 kb on + strand, within LRK53_RS09615at 2162.502 kb on - strand, within LRK53_RS09615at 2162.502 kb on - strand, within LRK53_RS09615at 2162.502 kb on - strand, within LRK53_RS09615at 2162.502 kb on - strand, within LRK53_RS09615at 2162.502 kb on - strand, within LRK53_RS09615at 2162.684 kb on + strand, within LRK53_RS09615at 2162.685 kb on - strand, within LRK53_RS09615at 2162.732 kb on - strand, within LRK53_RS09615at 2162.754 kb on - strand, within LRK53_RS09615at 2162.783 kb on + strand, within LRK53_RS09615at 2162.783 kb on + strand, within LRK53_RS09615at 2162.783 kb on + strand, within LRK53_RS09615at 2162.783 kb on + strand, within LRK53_RS09615at 2162.783 kb on + strand, within LRK53_RS09615at 2162.783 kb on + strand, within LRK53_RS09615at 2162.784 kb on - strand, within LRK53_RS09615at 2162.784 kb on - strand, within LRK53_RS09615at 2162.784 kb on - strand, within LRK53_RS09615at 2162.784 kb on - strand, within LRK53_RS09615at 2162.784 kb on - strand, within LRK53_RS09615at 2162.786 kb on - strand, within LRK53_RS09615at 2162.789 kb on + strand, within LRK53_RS09615at 2162.789 kb on + strand, within LRK53_RS09615at 2162.789 kb on + strand, within LRK53_RS09615at 2162.789 kb on + strand, within LRK53_RS09615at 2162.790 kb on - strand, within LRK53_RS09615at 2162.790 kb on - strand, within LRK53_RS09615at 2162.790 kb on - strand, within LRK53_RS09615at 2162.790 kb on - strand, within LRK53_RS09615at 2162.835 kb on - strandat 2162.951 kb on + strandat 2162.951 kb on + strandat 2162.952 kb on - strandat 2162.952 kb on - strandat 2162.952 kb on - strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.960 kb on + strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2162.961 kb on - strandat 2163.055 kb on - strandat 2163.156 kb on - strand, within LRK53_RS09620at 2163.156 kb on - strand, within LRK53_RS09620at 2163.156 kb on - strand, within LRK53_RS09620at 2163.156 kb on - strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.671 kb on + strand, within LRK53_RS09620at 2163.813 kb on + strand, within LRK53_RS09620at 2163.825 kb on - strand, within LRK53_RS09620at 2163.825 kb on - strand, within LRK53_RS09620at 2163.953 kb on + strandat 2163.953 kb on + strandat 2163.953 kb on + strandat 2163.953 kb on + strandat 2163.953 kb on + strandat 2163.953 kb on + strandat 2164.013 kb on + strandat 2164.013 kb on + strandat 2164.013 kb on + strandat 2164.013 kb on + strandat 2164.014 kb on - strandat 2164.014 kb on - strandat 2164.146 kb on + strandat 2164.146 kb on + strandat 2164.146 kb on + strandat 2164.147 kb on - strandat 2164.147 kb on - strandat 2164.147 kb on - strandat 2164.228 kb on + strandat 2164.240 kb on - strandat 2164.240 kb on - strandat 2164.585 kb on + strand, within LRK53_RS09625at 2164.585 kb on + strand, within LRK53_RS09625at 2164.585 kb on + strand, within LRK53_RS09625at 2164.586 kb on - strand, within LRK53_RS09625at 2164.586 kb on - strand, within LRK53_RS09625at 2164.586 kb on - strand, within LRK53_RS09625at 2164.586 kb on - strand, within LRK53_RS09625at 2164.684 kb on + strand, within LRK53_RS09625at 2164.684 kb on + strand, within LRK53_RS09625at 2164.685 kb on - strand, within LRK53_RS09625at 2164.685 kb on - strand, within LRK53_RS09625at 2164.685 kb on - strand, within LRK53_RS09625at 2164.699 kb on + strand, within LRK53_RS09625at 2164.699 kb on + strand, within LRK53_RS09625at 2164.699 kb on + strand, within LRK53_RS09625at 2164.699 kb on + strand, within LRK53_RS09625at 2164.700 kb on - strand, within LRK53_RS09625at 2164.700 kb on - strand, within LRK53_RS09625at 2164.700 kb on - strand, within LRK53_RS09625at 2164.750 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.786 kb on + strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.787 kb on - strand, within LRK53_RS09625at 2164.853 kb on + strand, within LRK53_RS09625at 2164.853 kb on + strand, within LRK53_RS09625at 2164.927 kb on + strand, within LRK53_RS09625at 2164.927 kb on + strand, within LRK53_RS09625at 2164.927 kb on + strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.928 kb on - strand, within LRK53_RS09625at 2164.929 kb on + strand, within LRK53_RS09625at 2164.929 kb on + strand, within LRK53_RS09625at 2164.929 kb on + strand, within LRK53_RS09625at 2164.929 kb on + strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.930 kb on - strand, within LRK53_RS09625at 2164.970 kb on - strand, within LRK53_RS09625

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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2,162,233 + -0.4
2,162,233 + +2.4
2,162,234 - -1.3
2,162,234 - +0.3
2,162,234 - -0.8
2,162,330 + -2.1
2,162,330 + -2.9
2,162,330 + -0.4
2,162,330 + -0.9
2,162,330 + -0.9
2,162,330 + +0.4
2,162,331 - -0.5
2,162,332 + -0.7
2,162,332 + +1.2
2,162,332 + -0.9
2,162,332 + +0.6
2,162,332 + +0.5
2,162,332 + -0.6
2,162,332 + -0.3
2,162,332 + -0.5
2,162,332 + -0.5
2,162,332 + -1.7
2,162,332 + -1.1
2,162,333 - -0.2
2,162,333 - +0.4
2,162,333 - -2.0
2,162,333 - -1.3
2,162,333 - -0.7
2,162,333 - -1.3
2,162,333 - +0.1
2,162,333 - -1.1
2,162,501 + LRK53_RS09615 0.17 -0.9
2,162,501 + LRK53_RS09615 0.17 -1.0
2,162,501 + LRK53_RS09615 0.17 +0.8
2,162,501 + LRK53_RS09615 0.17 -1.9
2,162,501 + LRK53_RS09615 0.17 +1.6
2,162,501 + LRK53_RS09615 0.17 -2.1
2,162,501 + LRK53_RS09615 0.17 -0.6
2,162,501 + LRK53_RS09615 0.17 -0.2
2,162,501 + LRK53_RS09615 0.17 -0.0
2,162,502 - LRK53_RS09615 0.17 -1.6
2,162,502 - LRK53_RS09615 0.17 +1.6
2,162,502 - LRK53_RS09615 0.17 +0.2
2,162,502 - LRK53_RS09615 0.17 -1.2
2,162,502 - LRK53_RS09615 0.17 -0.6
2,162,684 + LRK53_RS09615 0.62 -1.4
2,162,685 - LRK53_RS09615 0.62 +0.3
2,162,732 - LRK53_RS09615 0.74 -0.6
2,162,754 - LRK53_RS09615 0.80 +1.4
2,162,783 + LRK53_RS09615 0.87 -1.4
2,162,783 + LRK53_RS09615 0.87 -0.6
2,162,783 + LRK53_RS09615 0.87 -0.3
2,162,783 + LRK53_RS09615 0.87 -3.5
2,162,783 + LRK53_RS09615 0.87 -1.3
2,162,783 + LRK53_RS09615 0.87 -2.6
2,162,784 - LRK53_RS09615 0.87 -0.5
2,162,784 - LRK53_RS09615 0.87 -0.4
2,162,784 - LRK53_RS09615 0.87 +0.6
2,162,784 - LRK53_RS09615 0.87 -0.5
2,162,784 - LRK53_RS09615 0.87 +1.4
2,162,786 - LRK53_RS09615 0.87 -0.3
2,162,789 + LRK53_RS09615 0.88 -1.4
2,162,789 + LRK53_RS09615 0.88 -1.8
2,162,789 + LRK53_RS09615 0.88 -0.8
2,162,789 + LRK53_RS09615 0.88 -0.9
2,162,790 - LRK53_RS09615 0.88 -1.4
2,162,790 - LRK53_RS09615 0.88 -0.3
2,162,790 - LRK53_RS09615 0.88 +0.5
2,162,790 - LRK53_RS09615 0.88 +1.0
2,162,835 - -0.3
2,162,951 + -1.0
2,162,951 + +0.5
2,162,952 - -1.2
2,162,952 - -2.7
2,162,952 - -0.3
2,162,960 + +0.5
2,162,960 + -0.8
2,162,960 + +0.5
2,162,960 + +0.4
2,162,960 + -1.1
2,162,960 + -1.4
2,162,960 + -0.2
2,162,960 + +0.2
2,162,961 - -0.6
2,162,961 - -1.3
2,162,961 - -2.0
2,162,961 - +1.4
2,162,961 - -1.2
2,162,961 - -1.5
2,162,961 - -1.9
2,162,961 - -1.6
2,163,055 - +0.0
2,163,156 - LRK53_RS09620 0.17 -0.6
2,163,156 - LRK53_RS09620 0.17 -1.5
2,163,156 - LRK53_RS09620 0.17 -2.2
2,163,156 - LRK53_RS09620 0.17 -1.0
2,163,671 + LRK53_RS09620 0.67 -0.5
2,163,671 + LRK53_RS09620 0.67 -1.7
2,163,671 + LRK53_RS09620 0.67 -0.4
2,163,671 + LRK53_RS09620 0.67 -1.3
2,163,671 + LRK53_RS09620 0.67 -1.5
2,163,671 + LRK53_RS09620 0.67 -0.8
2,163,671 + LRK53_RS09620 0.67 -0.3
2,163,813 + LRK53_RS09620 0.80 -0.4
2,163,825 - LRK53_RS09620 0.81 -1.1
2,163,825 - LRK53_RS09620 0.81 +0.4
2,163,953 + -0.3
2,163,953 + +0.9
2,163,953 + -0.8
2,163,953 + -1.7
2,163,953 + +0.1
2,163,953 + -0.6
2,164,013 + +1.2
2,164,013 + +0.1
2,164,013 + -1.2
2,164,013 + -1.6
2,164,014 - +0.7
2,164,014 - -1.3
2,164,146 + +1.1
2,164,146 + -0.2
2,164,146 + +0.6
2,164,147 - -2.0
2,164,147 - -0.9
2,164,147 - -3.6
2,164,228 + -0.1
2,164,240 - -0.4
2,164,240 - -1.8
2,164,585 + LRK53_RS09625 0.16 -0.6
2,164,585 + LRK53_RS09625 0.16 -1.2
2,164,585 + LRK53_RS09625 0.16 +1.4
2,164,586 - LRK53_RS09625 0.16 -1.3
2,164,586 - LRK53_RS09625 0.16 -0.6
2,164,586 - LRK53_RS09625 0.16 -2.6
2,164,586 - LRK53_RS09625 0.16 +0.0
2,164,684 + LRK53_RS09625 0.20 -0.5
2,164,684 + LRK53_RS09625 0.20 +0.9
2,164,685 - LRK53_RS09625 0.20 -0.7
2,164,685 - LRK53_RS09625 0.20 -0.0
2,164,685 - LRK53_RS09625 0.20 -1.0
2,164,699 + LRK53_RS09625 0.21 -0.2
2,164,699 + LRK53_RS09625 0.21 +1.2
2,164,699 + LRK53_RS09625 0.21 -0.8
2,164,699 + LRK53_RS09625 0.21 -0.8
2,164,700 - LRK53_RS09625 0.21 -1.5
2,164,700 - LRK53_RS09625 0.21 +0.2
2,164,700 - LRK53_RS09625 0.21 -1.0
2,164,750 + LRK53_RS09625 0.23 -0.7
2,164,786 + LRK53_RS09625 0.25 -3.0
2,164,786 + LRK53_RS09625 0.25 -1.4
2,164,786 + LRK53_RS09625 0.25 -1.0
2,164,786 + LRK53_RS09625 0.25 +0.6
2,164,786 + LRK53_RS09625 0.25 +0.1
2,164,786 + LRK53_RS09625 0.25 -1.4
2,164,786 + LRK53_RS09625 0.25 -0.5
2,164,786 + LRK53_RS09625 0.25 -0.7
2,164,787 - LRK53_RS09625 0.25 +0.2
2,164,787 - LRK53_RS09625 0.25 -1.5
2,164,787 - LRK53_RS09625 0.25 +1.0
2,164,787 - LRK53_RS09625 0.25 +1.5
2,164,787 - LRK53_RS09625 0.25 -0.6
2,164,787 - LRK53_RS09625 0.25 -0.5
2,164,787 - LRK53_RS09625 0.25 +0.7
2,164,787 - LRK53_RS09625 0.25 -1.0
2,164,787 - LRK53_RS09625 0.25 +0.4
2,164,853 + LRK53_RS09625 0.27 -1.6
2,164,853 + LRK53_RS09625 0.27 +0.4
2,164,927 + LRK53_RS09625 0.31 +0.4
2,164,927 + LRK53_RS09625 0.31 +0.4
2,164,927 + LRK53_RS09625 0.31 -0.8
2,164,928 - LRK53_RS09625 0.31 -0.7
2,164,928 - LRK53_RS09625 0.31 +1.7
2,164,928 - LRK53_RS09625 0.31 -0.6
2,164,928 - LRK53_RS09625 0.31 -1.8
2,164,928 - LRK53_RS09625 0.31 -1.5
2,164,928 - LRK53_RS09625 0.31 -1.4
2,164,928 - LRK53_RS09625 0.31 -0.2
2,164,929 + LRK53_RS09625 0.31 +0.3
2,164,929 + LRK53_RS09625 0.31 -1.3
2,164,929 + LRK53_RS09625 0.31 -1.3
2,164,929 + LRK53_RS09625 0.31 -0.6
2,164,930 - LRK53_RS09625 0.31 -0.6
2,164,930 - LRK53_RS09625 0.31 -2.4
2,164,930 - LRK53_RS09625 0.31 +0.6
2,164,930 - LRK53_RS09625 0.31 -1.1
2,164,930 - LRK53_RS09625 0.31 -1.0
2,164,930 - LRK53_RS09625 0.31 -2.5
2,164,930 - LRK53_RS09625 0.31 -0.2
2,164,930 - LRK53_RS09625 0.31 -0.1
2,164,930 - LRK53_RS09625 0.31 -2.7
2,164,970 - LRK53_RS09625 0.32 -0.9

Or see this region's nucleotide sequence