Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS09300 and LRK53_RS09305 overlap by 4 nucleotides LRK53_RS09305 and LRK53_RS09310 are separated by 166 nucleotides LRK53_RS09310 and LRK53_RS09315 are separated by 11 nucleotides
LRK53_RS09300: LRK53_RS09300 - pyridoxal phosphate-dependent aminotransferase, at 2,076,948 to 2,078,090
_RS09300
LRK53_RS09305: LRK53_RS09305 - amidohydrolase, at 2,078,087 to 2,078,908
_RS09305
LRK53_RS09310: LRK53_RS09310 - arsenate reductase (glutaredoxin), at 2,079,075 to 2,079,419
_RS09310
LRK53_RS09315: LRK53_RS09315 - pseudouridine synthase, at 2,079,431 to 2,080,888
_RS09315
Position (kb)
2079
2080 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2078.086 kb on + strand at 2078.086 kb on + strand at 2078.087 kb on - strand at 2078.087 kb on - strand at 2078.125 kb on - strand at 2078.125 kb on - strand at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.177 kb on + strand, within LRK53_RS09305 at 2078.178 kb on - strand, within LRK53_RS09305 at 2078.178 kb on - strand, within LRK53_RS09305 at 2078.178 kb on - strand, within LRK53_RS09305 at 2078.180 kb on + strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.181 kb on - strand, within LRK53_RS09305 at 2078.279 kb on - strand, within LRK53_RS09305 at 2078.279 kb on - strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.378 kb on + strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.379 kb on - strand, within LRK53_RS09305 at 2078.423 kb on + strand, within LRK53_RS09305 at 2078.423 kb on + strand, within LRK53_RS09305 at 2078.423 kb on + strand, within LRK53_RS09305 at 2078.423 kb on + strand, within LRK53_RS09305 at 2078.423 kb on + strand, within LRK53_RS09305 at 2078.424 kb on - strand, within LRK53_RS09305 at 2078.534 kb on + strand, within LRK53_RS09305 at 2078.534 kb on + strand, within LRK53_RS09305 at 2078.534 kb on + strand, within LRK53_RS09305 at 2078.535 kb on - strand, within LRK53_RS09305 at 2078.535 kb on - strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.600 kb on + strand, within LRK53_RS09305 at 2078.601 kb on - strand, within LRK53_RS09305 at 2078.601 kb on - strand, within LRK53_RS09305 at 2078.656 kb on + strand, within LRK53_RS09305 at 2078.656 kb on + strand, within LRK53_RS09305 at 2078.656 kb on + strand, within LRK53_RS09305 at 2078.656 kb on + strand, within LRK53_RS09305 at 2078.656 kb on + strand, within LRK53_RS09305 at 2078.656 kb on + strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.657 kb on - strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.693 kb on + strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.694 kb on - strand, within LRK53_RS09305 at 2078.741 kb on + strand, within LRK53_RS09305 at 2078.741 kb on + strand, within LRK53_RS09305 at 2078.741 kb on + strand, within LRK53_RS09305 at 2078.741 kb on + strand, within LRK53_RS09305 at 2078.741 kb on + strand, within LRK53_RS09305 at 2078.741 kb on + strand, within LRK53_RS09305 at 2078.742 kb on - strand, within LRK53_RS09305 at 2078.742 kb on - strand, within LRK53_RS09305 at 2078.742 kb on - strand, within LRK53_RS09305 at 2078.742 kb on - strand, within LRK53_RS09305 at 2078.761 kb on - strand, within LRK53_RS09305 at 2078.945 kb on + strand at 2078.945 kb on + strand at 2078.945 kb on + strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2078.946 kb on - strand at 2079.081 kb on + strand at 2079.081 kb on + strand at 2079.081 kb on + strand at 2079.082 kb on - strand at 2079.188 kb on + strand, within LRK53_RS09310 at 2079.188 kb on + strand, within LRK53_RS09310 at 2079.229 kb on + strand, within LRK53_RS09310 at 2079.229 kb on + strand, within LRK53_RS09310 at 2079.229 kb on + strand, within LRK53_RS09310 at 2079.229 kb on + strand, within LRK53_RS09310 at 2079.229 kb on + strand, within LRK53_RS09310 at 2079.230 kb on - strand, within LRK53_RS09310 at 2079.230 kb on - strand, within LRK53_RS09310 at 2079.230 kb on - strand, within LRK53_RS09310 at 2079.230 kb on - strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.325 kb on + strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.326 kb on - strand, within LRK53_RS09310 at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.406 kb on + strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.407 kb on - strand at 2079.652 kb on - strand, within LRK53_RS09315 at 2079.921 kb on - strand, within LRK53_RS09315 at 2079.921 kb on - strand, within LRK53_RS09315 at 2079.945 kb on + strand, within LRK53_RS09315 at 2079.946 kb on - strand, within LRK53_RS09315 at 2080.015 kb on - strand, within LRK53_RS09315 at 2080.238 kb on + strand, within LRK53_RS09315 at 2080.383 kb on - strand, within LRK53_RS09315 at 2080.407 kb on + strand, within LRK53_RS09315 at 2080.407 kb on + strand, within LRK53_RS09315 at 2080.408 kb on - strand, within LRK53_RS09315 at 2080.408 kb on - strand, within LRK53_RS09315
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 2,078,086 + -0.1 2,078,086 + +0.1 2,078,087 - -0.5 2,078,087 - -0.5 2,078,125 - -1.1 2,078,125 - -0.1 2,078,177 + LRK53_RS09305 0.11 -0.1 2,078,177 + LRK53_RS09305 0.11 +0.7 2,078,177 + LRK53_RS09305 0.11 -1.3 2,078,177 + LRK53_RS09305 0.11 -0.3 2,078,177 + LRK53_RS09305 0.11 +0.7 2,078,177 + LRK53_RS09305 0.11 -0.6 2,078,177 + LRK53_RS09305 0.11 +1.1 2,078,178 - LRK53_RS09305 0.11 -0.4 2,078,178 - LRK53_RS09305 0.11 -0.2 2,078,178 - LRK53_RS09305 0.11 -0.8 2,078,180 + LRK53_RS09305 0.11 -2.7 2,078,181 - LRK53_RS09305 0.11 -0.9 2,078,181 - LRK53_RS09305 0.11 -2.3 2,078,181 - LRK53_RS09305 0.11 -1.3 2,078,181 - LRK53_RS09305 0.11 -1.4 2,078,181 - LRK53_RS09305 0.11 -0.0 2,078,181 - LRK53_RS09305 0.11 -0.5 2,078,181 - LRK53_RS09305 0.11 -0.7 2,078,181 - LRK53_RS09305 0.11 +1.3 2,078,279 - LRK53_RS09305 0.23 +1.1 2,078,279 - LRK53_RS09305 0.23 +2.2 2,078,378 + LRK53_RS09305 0.35 -0.8 2,078,378 + LRK53_RS09305 0.35 -0.6 2,078,378 + LRK53_RS09305 0.35 -0.2 2,078,378 + LRK53_RS09305 0.35 -0.0 2,078,378 + LRK53_RS09305 0.35 -0.4 2,078,378 + LRK53_RS09305 0.35 +0.2 2,078,378 + LRK53_RS09305 0.35 -0.3 2,078,379 - LRK53_RS09305 0.36 +0.8 2,078,379 - LRK53_RS09305 0.36 +0.4 2,078,379 - LRK53_RS09305 0.36 +0.6 2,078,379 - LRK53_RS09305 0.36 -1.4 2,078,379 - LRK53_RS09305 0.36 +0.3 2,078,379 - LRK53_RS09305 0.36 -1.1 2,078,379 - LRK53_RS09305 0.36 +0.7 2,078,423 + LRK53_RS09305 0.41 -0.0 2,078,423 + LRK53_RS09305 0.41 -0.2 2,078,423 + LRK53_RS09305 0.41 -0.4 2,078,423 + LRK53_RS09305 0.41 -0.0 2,078,423 + LRK53_RS09305 0.41 -0.7 2,078,424 - LRK53_RS09305 0.41 +0.6 2,078,534 + LRK53_RS09305 0.54 +1.6 2,078,534 + LRK53_RS09305 0.54 -1.8 2,078,534 + LRK53_RS09305 0.54 -1.0 2,078,535 - LRK53_RS09305 0.55 +1.2 2,078,535 - LRK53_RS09305 0.55 -0.5 2,078,600 + LRK53_RS09305 0.62 -1.5 2,078,600 + LRK53_RS09305 0.62 -0.1 2,078,600 + LRK53_RS09305 0.62 -0.2 2,078,600 + LRK53_RS09305 0.62 +0.6 2,078,600 + LRK53_RS09305 0.62 -0.4 2,078,600 + LRK53_RS09305 0.62 -1.0 2,078,600 + LRK53_RS09305 0.62 -1.0 2,078,600 + LRK53_RS09305 0.62 -0.4 2,078,600 + LRK53_RS09305 0.62 -1.3 2,078,601 - LRK53_RS09305 0.63 -1.3 2,078,601 - LRK53_RS09305 0.63 -0.4 2,078,656 + LRK53_RS09305 0.69 -1.5 2,078,656 + LRK53_RS09305 0.69 -0.7 2,078,656 + LRK53_RS09305 0.69 +0.6 2,078,656 + LRK53_RS09305 0.69 -0.9 2,078,656 + LRK53_RS09305 0.69 -2.5 2,078,656 + LRK53_RS09305 0.69 -0.3 2,078,657 - LRK53_RS09305 0.69 -0.3 2,078,657 - LRK53_RS09305 0.69 -0.7 2,078,657 - LRK53_RS09305 0.69 +0.2 2,078,657 - LRK53_RS09305 0.69 -0.1 2,078,657 - LRK53_RS09305 0.69 +3.7 2,078,657 - LRK53_RS09305 0.69 +0.9 2,078,657 - LRK53_RS09305 0.69 -0.6 2,078,693 + LRK53_RS09305 0.74 -0.2 2,078,693 + LRK53_RS09305 0.74 -0.9 2,078,693 + LRK53_RS09305 0.74 -0.1 2,078,693 + LRK53_RS09305 0.74 -1.3 2,078,693 + LRK53_RS09305 0.74 +0.0 2,078,693 + LRK53_RS09305 0.74 -0.8 2,078,693 + LRK53_RS09305 0.74 +0.2 2,078,693 + LRK53_RS09305 0.74 -0.6 2,078,693 + LRK53_RS09305 0.74 -1.2 2,078,693 + LRK53_RS09305 0.74 -3.2 2,078,693 + LRK53_RS09305 0.74 +0.8 2,078,693 + LRK53_RS09305 0.74 -1.3 2,078,693 + LRK53_RS09305 0.74 +0.8 2,078,693 + LRK53_RS09305 0.74 -0.4 2,078,693 + LRK53_RS09305 0.74 +0.1 2,078,693 + LRK53_RS09305 0.74 -1.1 2,078,693 + LRK53_RS09305 0.74 -0.0 2,078,693 + LRK53_RS09305 0.74 +0.1 2,078,694 - LRK53_RS09305 0.74 -0.6 2,078,694 - LRK53_RS09305 0.74 -0.1 2,078,694 - LRK53_RS09305 0.74 +0.3 2,078,694 - LRK53_RS09305 0.74 -0.2 2,078,694 - LRK53_RS09305 0.74 -0.0 2,078,694 - LRK53_RS09305 0.74 +1.8 2,078,694 - LRK53_RS09305 0.74 +0.3 2,078,694 - LRK53_RS09305 0.74 -0.8 2,078,694 - LRK53_RS09305 0.74 -2.0 2,078,694 - LRK53_RS09305 0.74 -1.2 2,078,741 + LRK53_RS09305 0.80 +0.3 2,078,741 + LRK53_RS09305 0.80 -0.8 2,078,741 + LRK53_RS09305 0.80 +0.1 2,078,741 + LRK53_RS09305 0.80 -0.8 2,078,741 + LRK53_RS09305 0.80 +0.1 2,078,741 + LRK53_RS09305 0.80 -1.6 2,078,742 - LRK53_RS09305 0.80 +0.1 2,078,742 - LRK53_RS09305 0.80 -0.2 2,078,742 - LRK53_RS09305 0.80 +0.3 2,078,742 - LRK53_RS09305 0.80 -0.5 2,078,761 - LRK53_RS09305 0.82 +2.2 2,078,945 + -1.0 2,078,945 + -1.6 2,078,945 + -0.4 2,078,946 - +1.2 2,078,946 - -0.9 2,078,946 - -1.6 2,078,946 - +0.3 2,078,946 - -1.1 2,078,946 - -1.0 2,078,946 - -1.1 2,078,946 - +1.0 2,078,946 - +0.6 2,079,081 + +0.4 2,079,081 + +0.3 2,079,081 + -0.5 2,079,082 - -1.8 2,079,188 + LRK53_RS09310 0.33 +1.0 2,079,188 + LRK53_RS09310 0.33 -0.3 2,079,229 + LRK53_RS09310 0.45 -0.6 2,079,229 + LRK53_RS09310 0.45 -0.7 2,079,229 + LRK53_RS09310 0.45 +0.1 2,079,229 + LRK53_RS09310 0.45 -0.7 2,079,229 + LRK53_RS09310 0.45 -1.0 2,079,230 - LRK53_RS09310 0.45 +0.3 2,079,230 - LRK53_RS09310 0.45 -1.3 2,079,230 - LRK53_RS09310 0.45 -1.1 2,079,230 - LRK53_RS09310 0.45 -1.3 2,079,325 + LRK53_RS09310 0.72 -0.8 2,079,325 + LRK53_RS09310 0.72 -1.5 2,079,325 + LRK53_RS09310 0.72 -0.6 2,079,325 + LRK53_RS09310 0.72 +0.2 2,079,325 + LRK53_RS09310 0.72 -1.2 2,079,325 + LRK53_RS09310 0.72 -1.1 2,079,325 + LRK53_RS09310 0.72 +0.1 2,079,325 + LRK53_RS09310 0.72 +0.3 2,079,325 + LRK53_RS09310 0.72 -0.6 2,079,326 - LRK53_RS09310 0.73 -2.0 2,079,326 - LRK53_RS09310 0.73 -0.4 2,079,326 - LRK53_RS09310 0.73 -0.4 2,079,326 - LRK53_RS09310 0.73 -0.8 2,079,326 - LRK53_RS09310 0.73 -0.4 2,079,326 - LRK53_RS09310 0.73 -0.9 2,079,326 - LRK53_RS09310 0.73 -0.6 2,079,326 - LRK53_RS09310 0.73 -0.4 2,079,326 - LRK53_RS09310 0.73 -0.8 2,079,326 - LRK53_RS09310 0.73 +0.6 2,079,406 + -0.4 2,079,406 + -0.5 2,079,406 + -1.5 2,079,406 + -0.6 2,079,406 + -0.7 2,079,406 + -0.6 2,079,406 + +0.3 2,079,406 + -0.3 2,079,406 + -1.0 2,079,406 + +0.9 2,079,406 + +1.3 2,079,406 + -1.1 2,079,406 + -0.5 2,079,407 - -0.9 2,079,407 - +0.1 2,079,407 - -0.3 2,079,407 - -0.3 2,079,407 - -0.6 2,079,407 - +0.1 2,079,407 - -0.9 2,079,407 - -1.2 2,079,407 - -0.2 2,079,407 - -0.8 2,079,407 - -0.6 2,079,407 - -2.8 2,079,407 - +0.0 2,079,407 - -0.9 2,079,407 - -0.3 2,079,652 - LRK53_RS09315 0.15 -0.1 2,079,921 - LRK53_RS09315 0.34 -0.7 2,079,921 - LRK53_RS09315 0.34 -0.1 2,079,945 + LRK53_RS09315 0.35 -0.1 2,079,946 - LRK53_RS09315 0.35 +0.8 2,080,015 - LRK53_RS09315 0.40 -0.6 2,080,238 + LRK53_RS09315 0.55 -0.4 2,080,383 - LRK53_RS09315 0.65 -1.8 2,080,407 + LRK53_RS09315 0.67 -0.8 2,080,407 + LRK53_RS09315 0.67 -0.8 2,080,408 - LRK53_RS09315 0.67 -0.6 2,080,408 - LRK53_RS09315 0.67 -0.8
Or see this region's nucleotide sequence