Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS09040

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS09030 and LRK53_RS09035 are separated by 22 nucleotidesLRK53_RS09035 and LRK53_RS09040 overlap by 4 nucleotidesLRK53_RS09040 and LRK53_RS09045 overlap by 8 nucleotidesLRK53_RS09045 and LRK53_RS09050 are separated by 19 nucleotides LRK53_RS09030: LRK53_RS09030 - ABC transporter substrate-binding protein, at 2,019,663 to 2,020,850 _RS09030 LRK53_RS09035: LRK53_RS09035 - ABC transporter permease subunit, at 2,020,873 to 2,021,709 _RS09035 LRK53_RS09040: LRK53_RS09040 - ABC transporter permease subunit, at 2,021,706 to 2,022,503 _RS09040 LRK53_RS09045: LRK53_RS09045 - ABC transporter ATP-binding protein, at 2,022,496 to 2,023,278 _RS09045 LRK53_RS09050: LRK53_RS09050 - CDP-alcohol phosphatidyltransferase family protein, at 2,023,298 to 2,023,888 _RS09050 Position (kb) 2021 2022 2023Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2020.848 kb on + strandat 2020.848 kb on + strandat 2020.848 kb on + strandat 2020.848 kb on + strandat 2020.848 kb on + strandat 2020.848 kb on + strandat 2020.849 kb on - strandat 2020.849 kb on - strandat 2020.849 kb on - strandat 2020.849 kb on - strandat 2020.849 kb on - strandat 2020.849 kb on - strandat 2020.849 kb on - strandat 2020.936 kb on + strandat 2020.936 kb on + strandat 2020.937 kb on - strandat 2020.937 kb on - strandat 2021.032 kb on + strand, within LRK53_RS09035at 2021.485 kb on + strand, within LRK53_RS09035at 2021.485 kb on + strand, within LRK53_RS09035at 2021.485 kb on + strand, within LRK53_RS09035at 2021.485 kb on + strand, within LRK53_RS09035at 2021.486 kb on - strand, within LRK53_RS09035at 2021.486 kb on - strand, within LRK53_RS09035at 2021.486 kb on - strand, within LRK53_RS09035at 2021.486 kb on - strand, within LRK53_RS09035at 2021.486 kb on - strand, within LRK53_RS09035at 2021.486 kb on - strand, within LRK53_RS09035at 2021.495 kb on + strand, within LRK53_RS09035at 2021.495 kb on + strand, within LRK53_RS09035at 2021.496 kb on - strand, within LRK53_RS09035at 2021.496 kb on - strand, within LRK53_RS09035at 2021.496 kb on - strand, within LRK53_RS09035at 2021.496 kb on - strand, within LRK53_RS09035at 2021.496 kb on - strand, within LRK53_RS09035at 2021.611 kb on + strand, within LRK53_RS09035at 2021.611 kb on + strand, within LRK53_RS09035at 2021.611 kb on + strand, within LRK53_RS09035at 2021.612 kb on - strand, within LRK53_RS09035at 2021.612 kb on - strand, within LRK53_RS09035at 2021.612 kb on - strand, within LRK53_RS09035at 2021.612 kb on - strand, within LRK53_RS09035at 2021.612 kb on - strand, within LRK53_RS09035at 2021.612 kb on - strand, within LRK53_RS09035at 2021.614 kb on - strand, within LRK53_RS09035at 2021.629 kb on + strandat 2021.629 kb on + strandat 2021.629 kb on + strandat 2021.629 kb on + strandat 2021.630 kb on - strandat 2021.630 kb on - strandat 2021.630 kb on - strandat 2021.630 kb on - strandat 2021.768 kb on - strandat 2021.768 kb on - strandat 2022.123 kb on + strand, within LRK53_RS09040at 2022.124 kb on - strand, within LRK53_RS09040at 2022.124 kb on - strand, within LRK53_RS09040at 2022.124 kb on - strand, within LRK53_RS09040at 2022.130 kb on - strand, within LRK53_RS09040at 2022.313 kb on + strand, within LRK53_RS09040at 2022.313 kb on + strand, within LRK53_RS09040at 2022.313 kb on + strand, within LRK53_RS09040at 2022.314 kb on - strand, within LRK53_RS09040at 2022.314 kb on - strand, within LRK53_RS09040at 2022.366 kb on + strand, within LRK53_RS09040at 2022.366 kb on + strand, within LRK53_RS09040at 2022.366 kb on + strand, within LRK53_RS09040at 2022.367 kb on - strand, within LRK53_RS09040at 2022.367 kb on - strand, within LRK53_RS09040at 2022.367 kb on - strand, within LRK53_RS09040at 2022.367 kb on - strand, within LRK53_RS09040at 2022.367 kb on - strand, within LRK53_RS09040at 2022.371 kb on + strand, within LRK53_RS09040at 2022.371 kb on + strand, within LRK53_RS09040at 2022.371 kb on + strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.372 kb on - strand, within LRK53_RS09040at 2022.439 kb on + strandat 2022.501 kb on + strandat 2022.502 kb on - strandat 2022.502 kb on - strandat 2022.502 kb on - strandat 2022.536 kb on + strandat 2022.536 kb on + strandat 2022.536 kb on + strandat 2022.536 kb on + strandat 2022.537 kb on - strandat 2022.537 kb on - strandat 2022.537 kb on - strandat 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.745 kb on + strand, within LRK53_RS09045at 2022.746 kb on - strand, within LRK53_RS09045at 2022.746 kb on - strand, within LRK53_RS09045at 2022.746 kb on - strand, within LRK53_RS09045at 2022.746 kb on - strand, within LRK53_RS09045at 2023.038 kb on + strand, within LRK53_RS09045at 2023.038 kb on + strand, within LRK53_RS09045at 2023.039 kb on - strand, within LRK53_RS09045at 2023.116 kb on + strand, within LRK53_RS09045at 2023.116 kb on + strand, within LRK53_RS09045at 2023.117 kb on - strand, within LRK53_RS09045at 2023.153 kb on + strand, within LRK53_RS09045at 2023.272 kb on + strandat 2023.272 kb on + strandat 2023.273 kb on - strandat 2023.300 kb on - strandat 2023.353 kb on + strandat 2023.353 kb on + strandat 2023.353 kb on + strandat 2023.354 kb on - strandat 2023.354 kb on - strandat 2023.400 kb on - strand, within LRK53_RS09050at 2023.464 kb on + strand, within LRK53_RS09050at 2023.465 kb on - strand, within LRK53_RS09050at 2023.465 kb on - strand, within LRK53_RS09050at 2023.465 kb on - strand, within LRK53_RS09050at 2023.486 kb on + strand, within LRK53_RS09050at 2023.486 kb on + strand, within LRK53_RS09050at 2023.486 kb on + strand, within LRK53_RS09050at 2023.486 kb on + strand, within LRK53_RS09050at 2023.486 kb on + strand, within LRK53_RS09050at 2023.486 kb on + strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050at 2023.487 kb on - strand, within LRK53_RS09050

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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2,020,848 + -0.8
2,020,848 + -1.5
2,020,848 + -2.1
2,020,848 + +0.0
2,020,848 + +0.4
2,020,848 + -0.3
2,020,849 - -1.7
2,020,849 - -1.1
2,020,849 - -0.6
2,020,849 - +0.0
2,020,849 - -2.0
2,020,849 - -0.9
2,020,849 - -0.1
2,020,936 + -1.6
2,020,936 + +0.2
2,020,937 - -0.1
2,020,937 - -0.8
2,021,032 + LRK53_RS09035 0.19 -2.4
2,021,485 + LRK53_RS09035 0.73 +0.2
2,021,485 + LRK53_RS09035 0.73 +1.2
2,021,485 + LRK53_RS09035 0.73 -1.6
2,021,485 + LRK53_RS09035 0.73 -0.8
2,021,486 - LRK53_RS09035 0.73 -1.1
2,021,486 - LRK53_RS09035 0.73 +0.4
2,021,486 - LRK53_RS09035 0.73 -0.2
2,021,486 - LRK53_RS09035 0.73 -0.9
2,021,486 - LRK53_RS09035 0.73 -0.2
2,021,486 - LRK53_RS09035 0.73 -2.2
2,021,495 + LRK53_RS09035 0.74 +0.6
2,021,495 + LRK53_RS09035 0.74 -1.1
2,021,496 - LRK53_RS09035 0.74 -1.5
2,021,496 - LRK53_RS09035 0.74 -0.4
2,021,496 - LRK53_RS09035 0.74 -1.3
2,021,496 - LRK53_RS09035 0.74 -1.1
2,021,496 - LRK53_RS09035 0.74 -1.4
2,021,611 + LRK53_RS09035 0.88 -0.3
2,021,611 + LRK53_RS09035 0.88 +1.2
2,021,611 + LRK53_RS09035 0.88 +0.9
2,021,612 - LRK53_RS09035 0.88 -0.9
2,021,612 - LRK53_RS09035 0.88 +1.1
2,021,612 - LRK53_RS09035 0.88 -2.4
2,021,612 - LRK53_RS09035 0.88 -0.2
2,021,612 - LRK53_RS09035 0.88 -0.3
2,021,612 - LRK53_RS09035 0.88 -0.0
2,021,614 - LRK53_RS09035 0.89 -0.2
2,021,629 + -0.6
2,021,629 + -0.8
2,021,629 + -0.8
2,021,629 + -2.3
2,021,630 - +1.1
2,021,630 - -0.0
2,021,630 - +1.2
2,021,630 - -0.9
2,021,768 - +0.2
2,021,768 - -1.7
2,022,123 + LRK53_RS09040 0.52 -1.3
2,022,124 - LRK53_RS09040 0.52 -1.3
2,022,124 - LRK53_RS09040 0.52 -1.0
2,022,124 - LRK53_RS09040 0.52 -0.1
2,022,130 - LRK53_RS09040 0.53 -1.4
2,022,313 + LRK53_RS09040 0.76 -1.5
2,022,313 + LRK53_RS09040 0.76 -0.7
2,022,313 + LRK53_RS09040 0.76 -1.5
2,022,314 - LRK53_RS09040 0.76 -1.0
2,022,314 - LRK53_RS09040 0.76 +0.2
2,022,366 + LRK53_RS09040 0.83 +0.2
2,022,366 + LRK53_RS09040 0.83 +1.0
2,022,366 + LRK53_RS09040 0.83 -3.2
2,022,367 - LRK53_RS09040 0.83 -0.4
2,022,367 - LRK53_RS09040 0.83 -1.4
2,022,367 - LRK53_RS09040 0.83 -1.8
2,022,367 - LRK53_RS09040 0.83 -0.6
2,022,367 - LRK53_RS09040 0.83 -1.9
2,022,371 + LRK53_RS09040 0.83 -1.6
2,022,371 + LRK53_RS09040 0.83 -2.5
2,022,371 + LRK53_RS09040 0.83 -0.1
2,022,372 - LRK53_RS09040 0.83 -1.5
2,022,372 - LRK53_RS09040 0.83 +1.2
2,022,372 - LRK53_RS09040 0.83 -0.1
2,022,372 - LRK53_RS09040 0.83 -0.6
2,022,372 - LRK53_RS09040 0.83 -1.7
2,022,372 - LRK53_RS09040 0.83 -0.3
2,022,372 - LRK53_RS09040 0.83 +1.9
2,022,439 + -1.9
2,022,501 + -2.1
2,022,502 - -0.6
2,022,502 - -0.6
2,022,502 - -0.4
2,022,536 + -1.6
2,022,536 + -0.4
2,022,536 + -0.3
2,022,536 + -0.7
2,022,537 - -1.2
2,022,537 - +2.9
2,022,537 - -0.1
2,022,745 + LRK53_RS09045 0.32 +0.2
2,022,745 + LRK53_RS09045 0.32 +1.2
2,022,745 + LRK53_RS09045 0.32 -1.1
2,022,745 + LRK53_RS09045 0.32 -0.1
2,022,745 + LRK53_RS09045 0.32 +0.4
2,022,745 + LRK53_RS09045 0.32 -0.1
2,022,745 + LRK53_RS09045 0.32 -1.0
2,022,745 + LRK53_RS09045 0.32 -1.3
2,022,745 + LRK53_RS09045 0.32 -0.5
2,022,745 + LRK53_RS09045 0.32 -1.9
2,022,745 + LRK53_RS09045 0.32 -1.8
2,022,745 + LRK53_RS09045 0.32 +0.1
2,022,745 + LRK53_RS09045 0.32 -0.6
2,022,745 + LRK53_RS09045 0.32 -1.6
2,022,745 + LRK53_RS09045 0.32 -2.0
2,022,745 + LRK53_RS09045 0.32 -0.6
2,022,746 - LRK53_RS09045 0.32 -1.6
2,022,746 - LRK53_RS09045 0.32 +0.6
2,022,746 - LRK53_RS09045 0.32 +0.1
2,022,746 - LRK53_RS09045 0.32 +0.8
2,023,038 + LRK53_RS09045 0.69 -0.8
2,023,038 + LRK53_RS09045 0.69 -0.4
2,023,039 - LRK53_RS09045 0.69 +0.4
2,023,116 + LRK53_RS09045 0.79 -0.1
2,023,116 + LRK53_RS09045 0.79 -2.7
2,023,117 - LRK53_RS09045 0.79 -1.3
2,023,153 + LRK53_RS09045 0.84 +0.5
2,023,272 + -1.1
2,023,272 + -2.1
2,023,273 - -0.7
2,023,300 - -0.4
2,023,353 + -0.7
2,023,353 + -1.8
2,023,353 + -1.6
2,023,354 - -1.9
2,023,354 - -1.6
2,023,400 - LRK53_RS09050 0.17 -0.6
2,023,464 + LRK53_RS09050 0.28 -1.0
2,023,465 - LRK53_RS09050 0.28 -1.9
2,023,465 - LRK53_RS09050 0.28 -1.0
2,023,465 - LRK53_RS09050 0.28 -0.4
2,023,486 + LRK53_RS09050 0.32 -2.3
2,023,486 + LRK53_RS09050 0.32 -1.0
2,023,486 + LRK53_RS09050 0.32 -0.1
2,023,486 + LRK53_RS09050 0.32 +0.1
2,023,486 + LRK53_RS09050 0.32 -1.0
2,023,486 + LRK53_RS09050 0.32 -0.3
2,023,487 - LRK53_RS09050 0.32 +0.2
2,023,487 - LRK53_RS09050 0.32 +0.2
2,023,487 - LRK53_RS09050 0.32 -0.8
2,023,487 - LRK53_RS09050 0.32 -0.8
2,023,487 - LRK53_RS09050 0.32 -2.9
2,023,487 - LRK53_RS09050 0.32 -1.4
2,023,487 - LRK53_RS09050 0.32 -0.6
2,023,487 - LRK53_RS09050 0.32 -0.5
2,023,487 - LRK53_RS09050 0.32 -0.5
2,023,487 - LRK53_RS09050 0.32 -2.5
2,023,487 - LRK53_RS09050 0.32 -1.7
2,023,487 - LRK53_RS09050 0.32 +1.0
2,023,487 - LRK53_RS09050 0.32 +0.6
2,023,487 - LRK53_RS09050 0.32 -0.2

Or see this region's nucleotide sequence