Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08740

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08735 and LRK53_RS08740 are separated by 26 nucleotidesLRK53_RS08740 and LRK53_RS08745 are separated by 71 nucleotides LRK53_RS08735: LRK53_RS08735 - Xaa-Pro peptidase family protein, at 1,964,792 to 1,965,985 _RS08735 LRK53_RS08740: LRK53_RS08740 - hypothetical protein, at 1,966,012 to 1,966,434 _RS08740 LRK53_RS08745: LRK53_RS08745 - LuxR C-terminal-related transcriptional regulator, at 1,966,506 to 1,969,205 _RS08745 Position (kb) 1966 1967Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1965.035 kb on + strand, within LRK53_RS08735at 1965.035 kb on + strand, within LRK53_RS08735at 1965.035 kb on + strand, within LRK53_RS08735at 1965.036 kb on - strand, within LRK53_RS08735at 1965.036 kb on - strand, within LRK53_RS08735at 1965.036 kb on - strand, within LRK53_RS08735at 1965.087 kb on + strand, within LRK53_RS08735at 1965.087 kb on + strand, within LRK53_RS08735at 1965.087 kb on + strand, within LRK53_RS08735at 1965.088 kb on - strand, within LRK53_RS08735at 1965.088 kb on - strand, within LRK53_RS08735at 1965.088 kb on - strand, within LRK53_RS08735at 1965.088 kb on - strand, within LRK53_RS08735at 1965.088 kb on - strand, within LRK53_RS08735at 1965.088 kb on - strand, within LRK53_RS08735at 1965.150 kb on + strand, within LRK53_RS08735at 1965.150 kb on + strand, within LRK53_RS08735at 1965.150 kb on + strand, within LRK53_RS08735at 1965.150 kb on + strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.151 kb on - strand, within LRK53_RS08735at 1965.221 kb on + strand, within LRK53_RS08735at 1965.221 kb on + strand, within LRK53_RS08735at 1965.222 kb on - strand, within LRK53_RS08735at 1965.373 kb on + strand, within LRK53_RS08735at 1965.390 kb on + strand, within LRK53_RS08735at 1965.391 kb on - strand, within LRK53_RS08735at 1965.557 kb on + strand, within LRK53_RS08735at 1965.557 kb on + strand, within LRK53_RS08735at 1965.557 kb on + strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.558 kb on - strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.581 kb on + strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.582 kb on - strand, within LRK53_RS08735at 1965.807 kb on - strand, within LRK53_RS08735at 1965.807 kb on - strand, within LRK53_RS08735at 1965.807 kb on - strand, within LRK53_RS08735at 1965.914 kb on + strandat 1965.914 kb on + strandat 1965.914 kb on + strandat 1965.914 kb on + strandat 1965.914 kb on + strandat 1965.915 kb on - strandat 1965.915 kb on - strandat 1965.915 kb on - strandat 1965.915 kb on - strandat 1966.076 kb on + strand, within LRK53_RS08740at 1966.076 kb on + strand, within LRK53_RS08740at 1966.076 kb on + strand, within LRK53_RS08740at 1966.076 kb on + strand, within LRK53_RS08740at 1966.077 kb on - strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.081 kb on + strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.082 kb on - strand, within LRK53_RS08740at 1966.182 kb on + strand, within LRK53_RS08740at 1966.182 kb on + strand, within LRK53_RS08740at 1966.182 kb on + strand, within LRK53_RS08740at 1966.182 kb on + strand, within LRK53_RS08740at 1966.183 kb on - strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.218 kb on + strand, within LRK53_RS08740at 1966.219 kb on - strand, within LRK53_RS08740at 1966.219 kb on - strand, within LRK53_RS08740at 1966.219 kb on - strand, within LRK53_RS08740at 1966.219 kb on - strand, within LRK53_RS08740at 1966.422 kb on + strandat 1966.423 kb on - strandat 1966.423 kb on - strandat 1966.423 kb on - strandat 1966.438 kb on + strandat 1966.438 kb on + strandat 1966.438 kb on + strandat 1966.438 kb on + strandat 1966.438 kb on + strandat 1966.438 kb on + strandat 1966.463 kb on + strandat 1966.464 kb on - strandat 1966.464 kb on - strandat 1966.464 kb on - strandat 1966.588 kb on + strandat 1966.588 kb on + strandat 1966.589 kb on - strandat 1966.589 kb on - strandat 1966.589 kb on - strandat 1967.042 kb on - strand, within LRK53_RS08745at 1967.333 kb on - strand, within LRK53_RS08745at 1967.344 kb on + strand, within LRK53_RS08745at 1967.344 kb on + strand, within LRK53_RS08745at 1967.344 kb on + strand, within LRK53_RS08745at 1967.344 kb on + strand, within LRK53_RS08745at 1967.344 kb on + strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.345 kb on - strand, within LRK53_RS08745at 1967.431 kb on + strand, within LRK53_RS08745at 1967.432 kb on - strand, within LRK53_RS08745at 1967.432 kb on - strand, within LRK53_RS08745at 1967.432 kb on - strand, within LRK53_RS08745at 1967.432 kb on - strand, within LRK53_RS08745

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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1,965,035 + LRK53_RS08735 0.20 -1.0
1,965,035 + LRK53_RS08735 0.20 -0.4
1,965,035 + LRK53_RS08735 0.20 -0.8
1,965,036 - LRK53_RS08735 0.20 -0.4
1,965,036 - LRK53_RS08735 0.20 -1.9
1,965,036 - LRK53_RS08735 0.20 -1.2
1,965,087 + LRK53_RS08735 0.25 -2.1
1,965,087 + LRK53_RS08735 0.25 +1.2
1,965,087 + LRK53_RS08735 0.25 -0.5
1,965,088 - LRK53_RS08735 0.25 -0.4
1,965,088 - LRK53_RS08735 0.25 +0.1
1,965,088 - LRK53_RS08735 0.25 -1.6
1,965,088 - LRK53_RS08735 0.25 +0.7
1,965,088 - LRK53_RS08735 0.25 -1.0
1,965,088 - LRK53_RS08735 0.25 -0.6
1,965,150 + LRK53_RS08735 0.30 +0.0
1,965,150 + LRK53_RS08735 0.30 -1.4
1,965,150 + LRK53_RS08735 0.30 -3.1
1,965,150 + LRK53_RS08735 0.30 +0.3
1,965,151 - LRK53_RS08735 0.30 +0.0
1,965,151 - LRK53_RS08735 0.30 +2.0
1,965,151 - LRK53_RS08735 0.30 -1.0
1,965,151 - LRK53_RS08735 0.30 -2.0
1,965,151 - LRK53_RS08735 0.30 -0.8
1,965,151 - LRK53_RS08735 0.30 -1.8
1,965,151 - LRK53_RS08735 0.30 +0.1
1,965,151 - LRK53_RS08735 0.30 -1.0
1,965,151 - LRK53_RS08735 0.30 -1.0
1,965,221 + LRK53_RS08735 0.36 +0.3
1,965,221 + LRK53_RS08735 0.36 -1.5
1,965,222 - LRK53_RS08735 0.36 +0.3
1,965,373 + LRK53_RS08735 0.49 -0.9
1,965,390 + LRK53_RS08735 0.50 -0.4
1,965,391 - LRK53_RS08735 0.50 -0.6
1,965,557 + LRK53_RS08735 0.64 -0.2
1,965,557 + LRK53_RS08735 0.64 +0.5
1,965,557 + LRK53_RS08735 0.64 -3.1
1,965,558 - LRK53_RS08735 0.64 -0.2
1,965,558 - LRK53_RS08735 0.64 -0.5
1,965,558 - LRK53_RS08735 0.64 +0.6
1,965,558 - LRK53_RS08735 0.64 -0.8
1,965,558 - LRK53_RS08735 0.64 -0.5
1,965,558 - LRK53_RS08735 0.64 -0.1
1,965,558 - LRK53_RS08735 0.64 +0.1
1,965,581 + LRK53_RS08735 0.66 +0.8
1,965,581 + LRK53_RS08735 0.66 +0.7
1,965,581 + LRK53_RS08735 0.66 +1.1
1,965,581 + LRK53_RS08735 0.66 -1.5
1,965,581 + LRK53_RS08735 0.66 +0.5
1,965,581 + LRK53_RS08735 0.66 +0.1
1,965,581 + LRK53_RS08735 0.66 +0.2
1,965,581 + LRK53_RS08735 0.66 -0.7
1,965,581 + LRK53_RS08735 0.66 +0.9
1,965,581 + LRK53_RS08735 0.66 +0.0
1,965,581 + LRK53_RS08735 0.66 -1.4
1,965,581 + LRK53_RS08735 0.66 -1.2
1,965,581 + LRK53_RS08735 0.66 -0.0
1,965,581 + LRK53_RS08735 0.66 -1.0
1,965,581 + LRK53_RS08735 0.66 -1.2
1,965,581 + LRK53_RS08735 0.66 +1.0
1,965,581 + LRK53_RS08735 0.66 -2.5
1,965,581 + LRK53_RS08735 0.66 -1.3
1,965,581 + LRK53_RS08735 0.66 -1.7
1,965,582 - LRK53_RS08735 0.66 -0.6
1,965,582 - LRK53_RS08735 0.66 +0.3
1,965,582 - LRK53_RS08735 0.66 +0.3
1,965,582 - LRK53_RS08735 0.66 -1.4
1,965,582 - LRK53_RS08735 0.66 -0.7
1,965,582 - LRK53_RS08735 0.66 -1.0
1,965,582 - LRK53_RS08735 0.66 -0.7
1,965,582 - LRK53_RS08735 0.66 -1.4
1,965,582 - LRK53_RS08735 0.66 -0.0
1,965,582 - LRK53_RS08735 0.66 -0.9
1,965,582 - LRK53_RS08735 0.66 -0.4
1,965,582 - LRK53_RS08735 0.66 -0.9
1,965,582 - LRK53_RS08735 0.66 -1.4
1,965,807 - LRK53_RS08735 0.85 +0.6
1,965,807 - LRK53_RS08735 0.85 -0.2
1,965,807 - LRK53_RS08735 0.85 +0.0
1,965,914 + -0.2
1,965,914 + -0.2
1,965,914 + -0.7
1,965,914 + -1.5
1,965,914 + -2.0
1,965,915 - +0.5
1,965,915 - +0.2
1,965,915 - -0.2
1,965,915 - -1.5
1,966,076 + LRK53_RS08740 0.15 +1.4
1,966,076 + LRK53_RS08740 0.15 +0.3
1,966,076 + LRK53_RS08740 0.15 -1.0
1,966,076 + LRK53_RS08740 0.15 -3.0
1,966,077 - LRK53_RS08740 0.15 -1.8
1,966,081 + LRK53_RS08740 0.16 -0.2
1,966,081 + LRK53_RS08740 0.16 -1.4
1,966,081 + LRK53_RS08740 0.16 +0.3
1,966,081 + LRK53_RS08740 0.16 +0.9
1,966,081 + LRK53_RS08740 0.16 -1.1
1,966,081 + LRK53_RS08740 0.16 +1.2
1,966,081 + LRK53_RS08740 0.16 -0.7
1,966,081 + LRK53_RS08740 0.16 -2.5
1,966,082 - LRK53_RS08740 0.17 -1.7
1,966,082 - LRK53_RS08740 0.17 -0.6
1,966,082 - LRK53_RS08740 0.17 +1.8
1,966,082 - LRK53_RS08740 0.17 -0.6
1,966,082 - LRK53_RS08740 0.17 -0.1
1,966,082 - LRK53_RS08740 0.17 +1.4
1,966,082 - LRK53_RS08740 0.17 -1.2
1,966,082 - LRK53_RS08740 0.17 -0.6
1,966,182 + LRK53_RS08740 0.40 -1.5
1,966,182 + LRK53_RS08740 0.40 -1.1
1,966,182 + LRK53_RS08740 0.40 +2.8
1,966,182 + LRK53_RS08740 0.40 -1.8
1,966,183 - LRK53_RS08740 0.40 +0.3
1,966,218 + LRK53_RS08740 0.49 -0.0
1,966,218 + LRK53_RS08740 0.49 -0.8
1,966,218 + LRK53_RS08740 0.49 +2.1
1,966,218 + LRK53_RS08740 0.49 -3.5
1,966,218 + LRK53_RS08740 0.49 +0.4
1,966,218 + LRK53_RS08740 0.49 +1.0
1,966,218 + LRK53_RS08740 0.49 -1.0
1,966,218 + LRK53_RS08740 0.49 -0.7
1,966,218 + LRK53_RS08740 0.49 -1.1
1,966,218 + LRK53_RS08740 0.49 +0.9
1,966,218 + LRK53_RS08740 0.49 +0.1
1,966,219 - LRK53_RS08740 0.49 -0.2
1,966,219 - LRK53_RS08740 0.49 -1.9
1,966,219 - LRK53_RS08740 0.49 +1.0
1,966,219 - LRK53_RS08740 0.49 +0.3
1,966,422 + -0.6
1,966,423 - -1.2
1,966,423 - -0.5
1,966,423 - -0.0
1,966,438 + +0.0
1,966,438 + -0.0
1,966,438 + -0.1
1,966,438 + -1.2
1,966,438 + +0.2
1,966,438 + -0.9
1,966,463 + +0.0
1,966,464 - +0.4
1,966,464 - -0.2
1,966,464 - +0.4
1,966,588 + -0.4
1,966,588 + -0.9
1,966,589 - -0.9
1,966,589 - +0.1
1,966,589 - -1.6
1,967,042 - LRK53_RS08745 0.20 +0.4
1,967,333 - LRK53_RS08745 0.31 -0.7
1,967,344 + LRK53_RS08745 0.31 -0.8
1,967,344 + LRK53_RS08745 0.31 -1.2
1,967,344 + LRK53_RS08745 0.31 -1.0
1,967,344 + LRK53_RS08745 0.31 -1.2
1,967,344 + LRK53_RS08745 0.31 -0.4
1,967,345 - LRK53_RS08745 0.31 +0.3
1,967,345 - LRK53_RS08745 0.31 -1.5
1,967,345 - LRK53_RS08745 0.31 -0.6
1,967,345 - LRK53_RS08745 0.31 -0.9
1,967,345 - LRK53_RS08745 0.31 -1.5
1,967,345 - LRK53_RS08745 0.31 -1.4
1,967,345 - LRK53_RS08745 0.31 -0.3
1,967,431 + LRK53_RS08745 0.34 -1.5
1,967,432 - LRK53_RS08745 0.34 -1.1
1,967,432 - LRK53_RS08745 0.34 -0.1
1,967,432 - LRK53_RS08745 0.34 +1.0
1,967,432 - LRK53_RS08745 0.34 -0.8

Or see this region's nucleotide sequence