Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS08595

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS08590 and LRK53_RS08595 are separated by 153 nucleotidesLRK53_RS08595 and LRK53_RS08600 overlap by 4 nucleotidesLRK53_RS08600 and LRK53_RS08605 are separated by 141 nucleotides LRK53_RS08590: LRK53_RS08590 - oligopeptide:H+ symporter, at 1,925,680 to 1,927,233 _RS08590 LRK53_RS08595: LRK53_RS08595 - DUF72 domain-containing protein, at 1,927,387 to 1,928,226 _RS08595 LRK53_RS08600: LRK53_RS08600 - phosphatase PAP2 family protein, at 1,928,223 to 1,929,017 _RS08600 LRK53_RS08605: LRK53_RS08605 - serine hydrolase, at 1,929,159 to 1,930,832 _RS08605 Position (kb) 1927 1928 1929Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1926.764 kb on - strand, within LRK53_RS08590at 1926.764 kb on - strand, within LRK53_RS08590at 1926.773 kb on + strand, within LRK53_RS08590at 1926.773 kb on + strand, within LRK53_RS08590at 1926.773 kb on + strand, within LRK53_RS08590at 1926.773 kb on + strand, within LRK53_RS08590at 1926.774 kb on - strand, within LRK53_RS08590at 1926.920 kb on - strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.944 kb on + strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.945 kb on - strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.947 kb on + strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.948 kb on - strand, within LRK53_RS08590at 1926.976 kb on + strand, within LRK53_RS08590at 1926.976 kb on + strand, within LRK53_RS08590at 1926.976 kb on + strand, within LRK53_RS08590at 1926.976 kb on + strand, within LRK53_RS08590at 1926.976 kb on + strand, within LRK53_RS08590at 1926.976 kb on + strand, within LRK53_RS08590at 1926.977 kb on - strand, within LRK53_RS08590at 1926.977 kb on - strand, within LRK53_RS08590at 1927.010 kb on + strand, within LRK53_RS08590at 1927.010 kb on + strand, within LRK53_RS08590at 1927.010 kb on + strand, within LRK53_RS08590at 1927.010 kb on + strand, within LRK53_RS08590at 1927.011 kb on - strand, within LRK53_RS08590at 1927.011 kb on - strand, within LRK53_RS08590at 1927.011 kb on - strand, within LRK53_RS08590at 1927.011 kb on - strand, within LRK53_RS08590at 1927.011 kb on - strand, within LRK53_RS08590at 1927.189 kb on + strandat 1927.190 kb on - strandat 1927.190 kb on - strandat 1927.245 kb on - strandat 1927.245 kb on - strandat 1927.245 kb on - strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.388 kb on + strandat 1927.595 kb on + strand, within LRK53_RS08595at 1927.595 kb on + strand, within LRK53_RS08595at 1927.596 kb on - strand, within LRK53_RS08595at 1927.673 kb on + strand, within LRK53_RS08595at 1927.673 kb on + strand, within LRK53_RS08595at 1927.674 kb on - strand, within LRK53_RS08595at 1927.730 kb on + strand, within LRK53_RS08595at 1927.730 kb on + strand, within LRK53_RS08595at 1927.731 kb on - strand, within LRK53_RS08595at 1927.731 kb on - strand, within LRK53_RS08595at 1927.731 kb on - strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.967 kb on + strand, within LRK53_RS08595at 1927.968 kb on - strand, within LRK53_RS08595at 1927.968 kb on - strand, within LRK53_RS08595at 1927.968 kb on - strand, within LRK53_RS08595at 1928.027 kb on + strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.028 kb on - strand, within LRK53_RS08595at 1928.051 kb on + strand, within LRK53_RS08595at 1928.051 kb on + strand, within LRK53_RS08595at 1928.052 kb on - strand, within LRK53_RS08595at 1928.096 kb on + strand, within LRK53_RS08595at 1928.097 kb on - strand, within LRK53_RS08595at 1928.132 kb on + strand, within LRK53_RS08595at 1928.156 kb on + strandat 1928.156 kb on + strandat 1928.156 kb on + strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.157 kb on - strandat 1928.233 kb on - strandat 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.329 kb on + strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.330 kb on - strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.437 kb on + strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.438 kb on - strand, within LRK53_RS08600at 1928.452 kb on + strand, within LRK53_RS08600at 1928.452 kb on + strand, within LRK53_RS08600at 1928.453 kb on - strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.868 kb on + strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.869 kb on - strand, within LRK53_RS08600at 1928.920 kb on + strand, within LRK53_RS08600at 1928.920 kb on + strand, within LRK53_RS08600at 1928.920 kb on + strand, within LRK53_RS08600at 1928.921 kb on - strand, within LRK53_RS08600at 1928.921 kb on - strand, within LRK53_RS08600at 1929.127 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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1,926,764 - LRK53_RS08590 0.70 +0.6
1,926,764 - LRK53_RS08590 0.70 -0.6
1,926,773 + LRK53_RS08590 0.70 +0.1
1,926,773 + LRK53_RS08590 0.70 -0.0
1,926,773 + LRK53_RS08590 0.70 -3.3
1,926,773 + LRK53_RS08590 0.70 -1.9
1,926,774 - LRK53_RS08590 0.70 -0.8
1,926,920 - LRK53_RS08590 0.80 -0.3
1,926,944 + LRK53_RS08590 0.81 -2.7
1,926,944 + LRK53_RS08590 0.81 -1.0
1,926,944 + LRK53_RS08590 0.81 -0.9
1,926,944 + LRK53_RS08590 0.81 +1.1
1,926,944 + LRK53_RS08590 0.81 -1.5
1,926,944 + LRK53_RS08590 0.81 +0.1
1,926,944 + LRK53_RS08590 0.81 +0.0
1,926,944 + LRK53_RS08590 0.81 +0.1
1,926,944 + LRK53_RS08590 0.81 +0.0
1,926,944 + LRK53_RS08590 0.81 -0.3
1,926,944 + LRK53_RS08590 0.81 +0.5
1,926,944 + LRK53_RS08590 0.81 -1.3
1,926,944 + LRK53_RS08590 0.81 +0.2
1,926,944 + LRK53_RS08590 0.81 -1.9
1,926,945 - LRK53_RS08590 0.81 -1.5
1,926,945 - LRK53_RS08590 0.81 -0.5
1,926,945 - LRK53_RS08590 0.81 +0.2
1,926,945 - LRK53_RS08590 0.81 +0.3
1,926,945 - LRK53_RS08590 0.81 +1.0
1,926,945 - LRK53_RS08590 0.81 -0.4
1,926,945 - LRK53_RS08590 0.81 -0.4
1,926,945 - LRK53_RS08590 0.81 -1.4
1,926,945 - LRK53_RS08590 0.81 -0.3
1,926,945 - LRK53_RS08590 0.81 -1.3
1,926,945 - LRK53_RS08590 0.81 -1.1
1,926,945 - LRK53_RS08590 0.81 +0.0
1,926,945 - LRK53_RS08590 0.81 -0.2
1,926,945 - LRK53_RS08590 0.81 +0.3
1,926,947 + LRK53_RS08590 0.82 -1.1
1,926,947 + LRK53_RS08590 0.82 -0.5
1,926,947 + LRK53_RS08590 0.82 -0.8
1,926,947 + LRK53_RS08590 0.82 -0.4
1,926,947 + LRK53_RS08590 0.82 +1.0
1,926,947 + LRK53_RS08590 0.82 -1.0
1,926,947 + LRK53_RS08590 0.82 -2.0
1,926,947 + LRK53_RS08590 0.82 -0.9
1,926,947 + LRK53_RS08590 0.82 -0.1
1,926,947 + LRK53_RS08590 0.82 -1.0
1,926,947 + LRK53_RS08590 0.82 -0.8
1,926,947 + LRK53_RS08590 0.82 +0.2
1,926,947 + LRK53_RS08590 0.82 -0.4
1,926,947 + LRK53_RS08590 0.82 -1.0
1,926,948 - LRK53_RS08590 0.82 -0.3
1,926,948 - LRK53_RS08590 0.82 -0.4
1,926,948 - LRK53_RS08590 0.82 -1.2
1,926,948 - LRK53_RS08590 0.82 -1.0
1,926,948 - LRK53_RS08590 0.82 -0.4
1,926,948 - LRK53_RS08590 0.82 -2.1
1,926,948 - LRK53_RS08590 0.82 -0.8
1,926,976 + LRK53_RS08590 0.83 -0.6
1,926,976 + LRK53_RS08590 0.83 -2.1
1,926,976 + LRK53_RS08590 0.83 -0.9
1,926,976 + LRK53_RS08590 0.83 -1.3
1,926,976 + LRK53_RS08590 0.83 -1.5
1,926,976 + LRK53_RS08590 0.83 -0.3
1,926,977 - LRK53_RS08590 0.83 -1.9
1,926,977 - LRK53_RS08590 0.83 -0.3
1,927,010 + LRK53_RS08590 0.86 +0.2
1,927,010 + LRK53_RS08590 0.86 -0.4
1,927,010 + LRK53_RS08590 0.86 -0.9
1,927,010 + LRK53_RS08590 0.86 -1.5
1,927,011 - LRK53_RS08590 0.86 +0.0
1,927,011 - LRK53_RS08590 0.86 +2.0
1,927,011 - LRK53_RS08590 0.86 +1.0
1,927,011 - LRK53_RS08590 0.86 +0.1
1,927,011 - LRK53_RS08590 0.86 +0.4
1,927,189 + -0.3
1,927,190 - +0.0
1,927,190 - -0.5
1,927,245 - +0.7
1,927,245 - -0.7
1,927,245 - -1.4
1,927,388 + -0.2
1,927,388 + -0.8
1,927,388 + +0.4
1,927,388 + -0.8
1,927,388 + +0.0
1,927,595 + LRK53_RS08595 0.25 -0.1
1,927,595 + LRK53_RS08595 0.25 -0.8
1,927,596 - LRK53_RS08595 0.25 +0.5
1,927,673 + LRK53_RS08595 0.34 -1.8
1,927,673 + LRK53_RS08595 0.34 -1.7
1,927,674 - LRK53_RS08595 0.34 -0.8
1,927,730 + LRK53_RS08595 0.41 +0.2
1,927,730 + LRK53_RS08595 0.41 +0.6
1,927,731 - LRK53_RS08595 0.41 -0.5
1,927,731 - LRK53_RS08595 0.41 +0.3
1,927,731 - LRK53_RS08595 0.41 -0.8
1,927,967 + LRK53_RS08595 0.69 -1.3
1,927,967 + LRK53_RS08595 0.69 -1.0
1,927,967 + LRK53_RS08595 0.69 -0.6
1,927,967 + LRK53_RS08595 0.69 +0.6
1,927,967 + LRK53_RS08595 0.69 -0.5
1,927,968 - LRK53_RS08595 0.69 +1.5
1,927,968 - LRK53_RS08595 0.69 +0.6
1,927,968 - LRK53_RS08595 0.69 -2.4
1,928,027 + LRK53_RS08595 0.76 +0.2
1,928,028 - LRK53_RS08595 0.76 -1.3
1,928,028 - LRK53_RS08595 0.76 +0.2
1,928,028 - LRK53_RS08595 0.76 +0.6
1,928,028 - LRK53_RS08595 0.76 -1.5
1,928,051 + LRK53_RS08595 0.79 -0.9
1,928,051 + LRK53_RS08595 0.79 -1.3
1,928,052 - LRK53_RS08595 0.79 -0.2
1,928,096 + LRK53_RS08595 0.84 -0.9
1,928,097 - LRK53_RS08595 0.85 -2.2
1,928,132 + LRK53_RS08595 0.89 -1.1
1,928,156 + -0.2
1,928,156 + +0.9
1,928,156 + +0.2
1,928,157 - -1.2
1,928,157 - +0.4
1,928,157 - -0.8
1,928,157 - -0.9
1,928,157 - -0.4
1,928,233 - -2.0
1,928,329 + LRK53_RS08600 0.13 -0.6
1,928,329 + LRK53_RS08600 0.13 +0.6
1,928,329 + LRK53_RS08600 0.13 -1.6
1,928,329 + LRK53_RS08600 0.13 -0.2
1,928,329 + LRK53_RS08600 0.13 -2.3
1,928,329 + LRK53_RS08600 0.13 -2.4
1,928,330 - LRK53_RS08600 0.13 -1.5
1,928,330 - LRK53_RS08600 0.13 -0.3
1,928,330 - LRK53_RS08600 0.13 +1.8
1,928,330 - LRK53_RS08600 0.13 -1.3
1,928,437 + LRK53_RS08600 0.27 -2.3
1,928,437 + LRK53_RS08600 0.27 -1.1
1,928,437 + LRK53_RS08600 0.27 +0.3
1,928,437 + LRK53_RS08600 0.27 +0.2
1,928,437 + LRK53_RS08600 0.27 +1.1
1,928,437 + LRK53_RS08600 0.27 -0.9
1,928,437 + LRK53_RS08600 0.27 -3.0
1,928,437 + LRK53_RS08600 0.27 -1.3
1,928,437 + LRK53_RS08600 0.27 -1.3
1,928,438 - LRK53_RS08600 0.27 -0.1
1,928,438 - LRK53_RS08600 0.27 -0.6
1,928,438 - LRK53_RS08600 0.27 -1.7
1,928,438 - LRK53_RS08600 0.27 +0.2
1,928,438 - LRK53_RS08600 0.27 +0.2
1,928,438 - LRK53_RS08600 0.27 -0.6
1,928,438 - LRK53_RS08600 0.27 -0.1
1,928,438 - LRK53_RS08600 0.27 -0.8
1,928,438 - LRK53_RS08600 0.27 -2.0
1,928,438 - LRK53_RS08600 0.27 +0.0
1,928,452 + LRK53_RS08600 0.29 -0.6
1,928,452 + LRK53_RS08600 0.29 +0.3
1,928,453 - LRK53_RS08600 0.29 -3.1
1,928,868 + LRK53_RS08600 0.81 -0.6
1,928,868 + LRK53_RS08600 0.81 -0.4
1,928,868 + LRK53_RS08600 0.81 +0.6
1,928,868 + LRK53_RS08600 0.81 -2.4
1,928,869 - LRK53_RS08600 0.81 +0.5
1,928,869 - LRK53_RS08600 0.81 -1.0
1,928,869 - LRK53_RS08600 0.81 -0.3
1,928,869 - LRK53_RS08600 0.81 -1.1
1,928,869 - LRK53_RS08600 0.81 -1.8
1,928,920 + LRK53_RS08600 0.88 -0.1
1,928,920 + LRK53_RS08600 0.88 -0.5
1,928,920 + LRK53_RS08600 0.88 -0.2
1,928,921 - LRK53_RS08600 0.88 -1.0
1,928,921 - LRK53_RS08600 0.88 -0.5
1,929,127 + -1.0

Or see this region's nucleotide sequence