Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS03790

Experiment: Planktonic; Day2; SGW; pH7

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntLRK53_RS03780 and LRK53_RS03785 are separated by 69 nucleotidesLRK53_RS03785 and LRK53_RS03790 are separated by 98 nucleotidesLRK53_RS03790 and LRK53_RS03795 are separated by 266 nucleotides LRK53_RS03780: LRK53_RS03780 - DUF4325 domain-containing protein, at 888,788 to 889,849 _RS03780 LRK53_RS03785: LRK53_RS03785 - hypothetical protein, at 889,919 to 890,116 _RS03785 LRK53_RS03790: LRK53_RS03790 - NnrU family protein, at 890,215 to 890,793 _RS03790 LRK53_RS03795: LRK53_RS03795 - phosphomethylpyrimidine synthase ThiC, at 891,060 to 892,862 _RS03795 Position (kb) 890 891Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 889.540 kb on + strand, within LRK53_RS03780at 889.540 kb on + strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.541 kb on - strand, within LRK53_RS03780at 889.662 kb on + strand, within LRK53_RS03780at 889.662 kb on + strand, within LRK53_RS03780at 889.662 kb on + strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.663 kb on - strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.695 kb on + strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.696 kb on - strand, within LRK53_RS03780at 889.718 kb on + strand, within LRK53_RS03780at 889.718 kb on + strand, within LRK53_RS03780at 889.719 kb on - strand, within LRK53_RS03780at 889.719 kb on - strand, within LRK53_RS03780at 889.860 kb on + strandat 889.860 kb on + strandat 889.861 kb on - strandat 889.861 kb on - strandat 889.861 kb on - strandat 889.865 kb on + strandat 889.865 kb on + strandat 889.865 kb on + strandat 889.865 kb on + strandat 889.866 kb on - strandat 889.866 kb on - strandat 889.888 kb on - strandat 889.888 kb on - strandat 889.909 kb on + strandat 889.991 kb on + strand, within LRK53_RS03785at 890.216 kb on + strandat 890.216 kb on + strandat 890.216 kb on + strandat 890.216 kb on + strandat 890.217 kb on - strandat 890.217 kb on - strandat 890.217 kb on - strandat 890.217 kb on - strandat 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.330 kb on + strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.331 kb on - strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.519 kb on + strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.520 kb on - strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.594 kb on + strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.595 kb on - strand, within LRK53_RS03790at 890.672 kb on + strand, within LRK53_RS03790at 890.672 kb on + strand, within LRK53_RS03790at 890.672 kb on + strand, within LRK53_RS03790at 890.673 kb on - strand, within LRK53_RS03790at 890.673 kb on - strand, within LRK53_RS03790at 890.673 kb on - strand, within LRK53_RS03790at 890.689 kb on + strand, within LRK53_RS03790at 890.689 kb on + strand, within LRK53_RS03790at 890.689 kb on + strand, within LRK53_RS03790at 890.690 kb on - strand, within LRK53_RS03790at 890.690 kb on - strand, within LRK53_RS03790at 890.690 kb on - strand, within LRK53_RS03790at 890.829 kb on + strandat 890.829 kb on + strandat 890.829 kb on + strandat 890.829 kb on + strandat 890.830 kb on - strandat 890.830 kb on - strandat 890.830 kb on - strandat 890.830 kb on - strandat 890.830 kb on - strandat 890.881 kb on + strandat 890.881 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.138 kb on + strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.139 kb on - strandat 891.225 kb on + strandat 891.225 kb on + strandat 891.225 kb on + strandat 891.226 kb on - strandat 891.226 kb on - strandat 891.243 kb on + strand, within LRK53_RS03795at 891.243 kb on + strand, within LRK53_RS03795at 891.243 kb on + strand, within LRK53_RS03795at 891.243 kb on + strand, within LRK53_RS03795at 891.243 kb on + strand, within LRK53_RS03795at 891.243 kb on + strand, within LRK53_RS03795at 891.244 kb on - strand, within LRK53_RS03795at 891.244 kb on - strand, within LRK53_RS03795at 891.244 kb on - strand, within LRK53_RS03795at 891.244 kb on - strand, within LRK53_RS03795at 891.244 kb on - strand, within LRK53_RS03795at 891.432 kb on + strand, within LRK53_RS03795at 891.471 kb on + strand, within LRK53_RS03795at 891.471 kb on + strand, within LRK53_RS03795at 891.471 kb on + strand, within LRK53_RS03795at 891.472 kb on - strand, within LRK53_RS03795at 891.472 kb on - strand, within LRK53_RS03795at 891.472 kb on - strand, within LRK53_RS03795

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
remove
889,540 + LRK53_RS03780 0.71 -0.9
889,540 + LRK53_RS03780 0.71 -0.8
889,541 - LRK53_RS03780 0.71 -0.8
889,541 - LRK53_RS03780 0.71 -1.6
889,541 - LRK53_RS03780 0.71 -0.8
889,541 - LRK53_RS03780 0.71 -0.6
889,541 - LRK53_RS03780 0.71 +0.6
889,662 + LRK53_RS03780 0.82 -0.7
889,662 + LRK53_RS03780 0.82 -1.5
889,662 + LRK53_RS03780 0.82 -0.4
889,663 - LRK53_RS03780 0.82 +1.2
889,663 - LRK53_RS03780 0.82 +1.4
889,663 - LRK53_RS03780 0.82 -1.2
889,663 - LRK53_RS03780 0.82 +0.4
889,663 - LRK53_RS03780 0.82 +0.7
889,663 - LRK53_RS03780 0.82 -0.8
889,663 - LRK53_RS03780 0.82 -1.2
889,663 - LRK53_RS03780 0.82 -1.0
889,663 - LRK53_RS03780 0.82 -2.9
889,663 - LRK53_RS03780 0.82 -0.8
889,663 - LRK53_RS03780 0.82 -0.8
889,663 - LRK53_RS03780 0.82 -0.9
889,695 + LRK53_RS03780 0.85 +2.4
889,695 + LRK53_RS03780 0.85 -1.2
889,695 + LRK53_RS03780 0.85 -1.1
889,695 + LRK53_RS03780 0.85 -0.6
889,696 - LRK53_RS03780 0.85 -1.2
889,696 - LRK53_RS03780 0.85 -0.6
889,696 - LRK53_RS03780 0.85 -1.8
889,696 - LRK53_RS03780 0.85 -1.3
889,696 - LRK53_RS03780 0.85 -0.8
889,696 - LRK53_RS03780 0.85 +0.2
889,718 + LRK53_RS03780 0.88 -0.4
889,718 + LRK53_RS03780 0.88 -1.1
889,719 - LRK53_RS03780 0.88 +1.0
889,719 - LRK53_RS03780 0.88 -2.8
889,860 + -1.4
889,860 + -0.9
889,861 - -1.1
889,861 - -0.4
889,861 - -0.6
889,865 + -0.2
889,865 + -1.7
889,865 + -1.6
889,865 + -0.4
889,866 - -0.3
889,866 - -0.5
889,888 - +1.4
889,888 - -1.6
889,909 + +0.1
889,991 + LRK53_RS03785 0.36 -0.9
890,216 + +2.4
890,216 + -0.9
890,216 + -1.1
890,216 + -1.1
890,217 - -1.4
890,217 - +0.4
890,217 - -0.5
890,217 - -0.1
890,330 + LRK53_RS03790 0.20 +1.4
890,330 + LRK53_RS03790 0.20 -2.1
890,330 + LRK53_RS03790 0.20 -0.2
890,330 + LRK53_RS03790 0.20 +0.1
890,330 + LRK53_RS03790 0.20 -1.5
890,330 + LRK53_RS03790 0.20 +0.4
890,331 - LRK53_RS03790 0.20 -1.7
890,331 - LRK53_RS03790 0.20 -0.3
890,331 - LRK53_RS03790 0.20 -0.9
890,331 - LRK53_RS03790 0.20 +0.1
890,331 - LRK53_RS03790 0.20 -1.9
890,331 - LRK53_RS03790 0.20 -2.2
890,519 + LRK53_RS03790 0.53 -1.7
890,519 + LRK53_RS03790 0.53 -1.9
890,519 + LRK53_RS03790 0.53 +0.2
890,519 + LRK53_RS03790 0.53 -0.4
890,519 + LRK53_RS03790 0.53 -0.5
890,519 + LRK53_RS03790 0.53 -0.1
890,519 + LRK53_RS03790 0.53 +1.0
890,519 + LRK53_RS03790 0.53 -0.9
890,520 - LRK53_RS03790 0.53 -0.5
890,520 - LRK53_RS03790 0.53 -0.9
890,520 - LRK53_RS03790 0.53 -0.2
890,520 - LRK53_RS03790 0.53 -3.6
890,520 - LRK53_RS03790 0.53 -1.9
890,520 - LRK53_RS03790 0.53 -1.3
890,520 - LRK53_RS03790 0.53 -0.6
890,520 - LRK53_RS03790 0.53 +0.1
890,520 - LRK53_RS03790 0.53 -1.1
890,520 - LRK53_RS03790 0.53 -0.6
890,594 + LRK53_RS03790 0.65 -3.5
890,594 + LRK53_RS03790 0.65 +1.0
890,594 + LRK53_RS03790 0.65 +0.7
890,594 + LRK53_RS03790 0.65 -1.1
890,594 + LRK53_RS03790 0.65 +0.6
890,594 + LRK53_RS03790 0.65 -0.5
890,595 - LRK53_RS03790 0.66 +1.0
890,595 - LRK53_RS03790 0.66 -1.5
890,595 - LRK53_RS03790 0.66 -0.9
890,595 - LRK53_RS03790 0.66 +0.5
890,595 - LRK53_RS03790 0.66 -0.4
890,595 - LRK53_RS03790 0.66 +0.5
890,595 - LRK53_RS03790 0.66 -1.5
890,595 - LRK53_RS03790 0.66 -0.4
890,595 - LRK53_RS03790 0.66 -2.1
890,595 - LRK53_RS03790 0.66 -0.5
890,595 - LRK53_RS03790 0.66 -0.8
890,672 + LRK53_RS03790 0.79 -0.4
890,672 + LRK53_RS03790 0.79 +0.8
890,672 + LRK53_RS03790 0.79 -0.8
890,673 - LRK53_RS03790 0.79 -1.0
890,673 - LRK53_RS03790 0.79 -2.4
890,673 - LRK53_RS03790 0.79 -1.6
890,689 + LRK53_RS03790 0.82 -1.0
890,689 + LRK53_RS03790 0.82 -0.6
890,689 + LRK53_RS03790 0.82 +3.4
890,690 - LRK53_RS03790 0.82 -0.6
890,690 - LRK53_RS03790 0.82 +0.0
890,690 - LRK53_RS03790 0.82 -1.3
890,829 + +0.7
890,829 + -0.1
890,829 + -2.1
890,829 + -2.0
890,830 - -2.9
890,830 - +2.2
890,830 - +0.4
890,830 - -0.9
890,830 - -1.1
890,881 + -0.5
890,881 + +0.5
891,138 + -0.0
891,138 + +0.5
891,138 + -0.1
891,138 + -0.6
891,138 + -1.1
891,138 + -1.5
891,138 + +0.1
891,138 + -2.7
891,138 + -0.6
891,138 + -0.4
891,138 + -2.2
891,138 + +1.2
891,138 + -0.8
891,138 + -0.7
891,138 + +0.8
891,138 + +0.3
891,138 + +0.2
891,139 - -3.3
891,139 - -1.7
891,139 - +0.2
891,139 - -0.9
891,139 - +0.0
891,139 - -0.7
891,139 - -0.6
891,139 - -2.4
891,225 + +1.0
891,225 + -3.8
891,225 + -0.9
891,226 - +0.3
891,226 - -0.1
891,243 + LRK53_RS03795 0.10 -2.0
891,243 + LRK53_RS03795 0.10 -2.6
891,243 + LRK53_RS03795 0.10 -0.7
891,243 + LRK53_RS03795 0.10 -1.1
891,243 + LRK53_RS03795 0.10 +0.5
891,243 + LRK53_RS03795 0.10 +0.8
891,244 - LRK53_RS03795 0.10 -0.8
891,244 - LRK53_RS03795 0.10 -1.3
891,244 - LRK53_RS03795 0.10 -0.2
891,244 - LRK53_RS03795 0.10 +0.8
891,244 - LRK53_RS03795 0.10 +0.2
891,432 + LRK53_RS03795 0.21 -2.9
891,471 + LRK53_RS03795 0.23 -0.7
891,471 + LRK53_RS03795 0.23 -1.9
891,471 + LRK53_RS03795 0.23 -1.5
891,472 - LRK53_RS03795 0.23 -1.5
891,472 - LRK53_RS03795 0.23 -1.1
891,472 - LRK53_RS03795 0.23 -1.6

Or see this region's nucleotide sequence