Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03765 and LRK53_RS03770 are separated by 3 nucleotides LRK53_RS03770 and LRK53_RS03775 are separated by 55 nucleotides LRK53_RS03775 and LRK53_RS03780 are separated by 2 nucleotides
LRK53_RS03765: LRK53_RS03765 - NAD-dependent DNA ligase LigB, at 886,043 to 887,728
_RS03765
LRK53_RS03770: LRK53_RS03770 - hypothetical protein, at 887,732 to 888,133
_RS03770
LRK53_RS03775: LRK53_RS03775 - DUF938 domain-containing protein, at 888,189 to 888,785
_RS03775
LRK53_RS03780: LRK53_RS03780 - DUF4325 domain-containing protein, at 888,788 to 889,849
_RS03780
Position (kb) 888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 887.251 kb on - strand, within LRK53_RS03765 at 887.365 kb on + strand, within LRK53_RS03765 at 887.365 kb on + strand, within LRK53_RS03765 at 887.757 kb on + strand at 887.757 kb on + strand at 887.757 kb on + strand at 887.757 kb on + strand at 887.757 kb on + strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.759 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.761 kb on - strand at 887.761 kb on - strand at 887.761 kb on - strand at 887.979 kb on + strand, within LRK53_RS03770 at 887.979 kb on + strand, within LRK53_RS03770 at 887.979 kb on + strand, within LRK53_RS03770 at 887.979 kb on + strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.081 kb on + strand, within LRK53_RS03770 at 888.082 kb on - strand, within LRK53_RS03770 at 888.144 kb on + strand at 888.144 kb on + strand at 888.144 kb on + strand at 888.145 kb on - strand at 888.145 kb on - strand at 888.391 kb on + strand, within LRK53_RS03775 at 888.391 kb on + strand, within LRK53_RS03775 at 888.391 kb on + strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.769 kb on + strand at 888.769 kb on + strand at 888.770 kb on - strand at 888.770 kb on - strand at 888.770 kb on - strand at 888.854 kb on + strand at 888.854 kb on + strand at 888.854 kb on + strand at 888.854 kb on + strand at 888.854 kb on + strand at 889.089 kb on + strand, within LRK53_RS03780 at 889.089 kb on + strand, within LRK53_RS03780 at 889.089 kb on + strand, within LRK53_RS03780 at 889.089 kb on + strand, within LRK53_RS03780 at 889.089 kb on + strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.090 kb on - strand, within LRK53_RS03780 at 889.110 kb on + strand, within LRK53_RS03780 at 889.110 kb on + strand, within LRK53_RS03780 at 889.110 kb on + strand, within LRK53_RS03780 at 889.110 kb on + strand, within LRK53_RS03780 at 889.110 kb on + strand, within LRK53_RS03780 at 889.111 kb on - strand, within LRK53_RS03780 at 889.111 kb on - strand, within LRK53_RS03780 at 889.540 kb on + strand, within LRK53_RS03780 at 889.540 kb on + strand, within LRK53_RS03780 at 889.541 kb on - strand, within LRK53_RS03780 at 889.541 kb on - strand, within LRK53_RS03780 at 889.541 kb on - strand, within LRK53_RS03780 at 889.541 kb on - strand, within LRK53_RS03780 at 889.541 kb on - strand, within LRK53_RS03780 at 889.662 kb on + strand, within LRK53_RS03780 at 889.662 kb on + strand, within LRK53_RS03780 at 889.662 kb on + strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.663 kb on - strand, within LRK53_RS03780 at 889.695 kb on + strand, within LRK53_RS03780 at 889.695 kb on + strand, within LRK53_RS03780 at 889.695 kb on + strand, within LRK53_RS03780 at 889.695 kb on + strand, within LRK53_RS03780 at 889.696 kb on - strand, within LRK53_RS03780 at 889.696 kb on - strand, within LRK53_RS03780 at 889.696 kb on - strand, within LRK53_RS03780 at 889.696 kb on - strand, within LRK53_RS03780 at 889.696 kb on - strand, within LRK53_RS03780 at 889.696 kb on - strand, within LRK53_RS03780 at 889.718 kb on + strand, within LRK53_RS03780 at 889.718 kb on + strand, within LRK53_RS03780 at 889.719 kb on - strand, within LRK53_RS03780 at 889.719 kb on - strand, within LRK53_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 887,251 - LRK53_RS03765 0.72 -0.0 887,365 + LRK53_RS03765 0.78 +0.8 887,365 + LRK53_RS03765 0.78 -0.3 887,757 + -0.4 887,757 + -1.2 887,757 + -1.4 887,757 + -0.6 887,757 + -0.9 887,758 - -1.2 887,758 - +0.8 887,758 - -1.4 887,758 - -1.3 887,758 - -0.4 887,759 + -0.7 887,760 + +0.0 887,760 + +0.8 887,760 + -1.4 887,760 + +1.2 887,760 + -2.3 887,760 + -0.5 887,761 - -0.4 887,761 - +1.0 887,761 - -1.4 887,979 + LRK53_RS03770 0.61 -1.1 887,979 + LRK53_RS03770 0.61 -0.4 887,979 + LRK53_RS03770 0.61 -1.1 887,979 + LRK53_RS03770 0.61 +0.6 887,980 - LRK53_RS03770 0.62 -1.6 887,980 - LRK53_RS03770 0.62 -0.2 887,980 - LRK53_RS03770 0.62 -0.2 887,980 - LRK53_RS03770 0.62 +1.3 887,980 - LRK53_RS03770 0.62 -0.9 887,980 - LRK53_RS03770 0.62 +1.2 888,000 + LRK53_RS03770 0.67 -2.0 888,000 + LRK53_RS03770 0.67 -1.3 888,000 + LRK53_RS03770 0.67 -0.4 888,000 + LRK53_RS03770 0.67 -1.6 888,000 + LRK53_RS03770 0.67 +0.4 888,001 - LRK53_RS03770 0.67 -0.4 888,001 - LRK53_RS03770 0.67 -0.1 888,001 - LRK53_RS03770 0.67 +0.2 888,001 - LRK53_RS03770 0.67 -1.1 888,001 - LRK53_RS03770 0.67 -0.6 888,081 + LRK53_RS03770 0.87 +0.2 888,082 - LRK53_RS03770 0.87 -0.8 888,144 + +1.2 888,144 + -2.2 888,144 + -0.8 888,145 - -2.3 888,145 - -0.8 888,391 + LRK53_RS03775 0.34 +0.3 888,391 + LRK53_RS03775 0.34 -0.1 888,391 + LRK53_RS03775 0.34 +0.2 888,392 - LRK53_RS03775 0.34 -1.1 888,392 - LRK53_RS03775 0.34 -1.4 888,392 - LRK53_RS03775 0.34 -1.5 888,392 - LRK53_RS03775 0.34 -0.5 888,392 - LRK53_RS03775 0.34 -1.8 888,392 - LRK53_RS03775 0.34 -1.1 888,392 - LRK53_RS03775 0.34 -0.1 888,392 - LRK53_RS03775 0.34 -2.6 888,392 - LRK53_RS03775 0.34 -1.1 888,769 + -1.8 888,769 + -0.3 888,770 - -0.4 888,770 - -0.6 888,770 - +1.1 888,854 + -1.4 888,854 + -0.6 888,854 + -1.7 888,854 + -0.9 888,854 + +1.4 889,089 + LRK53_RS03780 0.28 +0.7 889,089 + LRK53_RS03780 0.28 +0.9 889,089 + LRK53_RS03780 0.28 +1.3 889,089 + LRK53_RS03780 0.28 -1.1 889,089 + LRK53_RS03780 0.28 -0.9 889,090 - LRK53_RS03780 0.28 -0.6 889,090 - LRK53_RS03780 0.28 +0.4 889,090 - LRK53_RS03780 0.28 -1.9 889,090 - LRK53_RS03780 0.28 +0.1 889,090 - LRK53_RS03780 0.28 -1.9 889,090 - LRK53_RS03780 0.28 -0.3 889,090 - LRK53_RS03780 0.28 -0.1 889,090 - LRK53_RS03780 0.28 -1.1 889,090 - LRK53_RS03780 0.28 -0.6 889,110 + LRK53_RS03780 0.30 -0.8 889,110 + LRK53_RS03780 0.30 -0.0 889,110 + LRK53_RS03780 0.30 -0.8 889,110 + LRK53_RS03780 0.30 -0.7 889,110 + LRK53_RS03780 0.30 -1.3 889,111 - LRK53_RS03780 0.30 -0.7 889,111 - LRK53_RS03780 0.30 -1.3 889,540 + LRK53_RS03780 0.71 -0.9 889,540 + LRK53_RS03780 0.71 -0.8 889,541 - LRK53_RS03780 0.71 -0.8 889,541 - LRK53_RS03780 0.71 -1.6 889,541 - LRK53_RS03780 0.71 -0.8 889,541 - LRK53_RS03780 0.71 -0.6 889,541 - LRK53_RS03780 0.71 +0.6 889,662 + LRK53_RS03780 0.82 -0.7 889,662 + LRK53_RS03780 0.82 -1.5 889,662 + LRK53_RS03780 0.82 -0.4 889,663 - LRK53_RS03780 0.82 +1.2 889,663 - LRK53_RS03780 0.82 +1.4 889,663 - LRK53_RS03780 0.82 -1.2 889,663 - LRK53_RS03780 0.82 +0.4 889,663 - LRK53_RS03780 0.82 +0.7 889,663 - LRK53_RS03780 0.82 -0.8 889,663 - LRK53_RS03780 0.82 -1.2 889,663 - LRK53_RS03780 0.82 -1.0 889,663 - LRK53_RS03780 0.82 -2.9 889,663 - LRK53_RS03780 0.82 -0.8 889,663 - LRK53_RS03780 0.82 -0.8 889,663 - LRK53_RS03780 0.82 -0.9 889,695 + LRK53_RS03780 0.85 +2.4 889,695 + LRK53_RS03780 0.85 -1.2 889,695 + LRK53_RS03780 0.85 -1.1 889,695 + LRK53_RS03780 0.85 -0.6 889,696 - LRK53_RS03780 0.85 -1.2 889,696 - LRK53_RS03780 0.85 -0.6 889,696 - LRK53_RS03780 0.85 -1.8 889,696 - LRK53_RS03780 0.85 -1.3 889,696 - LRK53_RS03780 0.85 -0.8 889,696 - LRK53_RS03780 0.85 +0.2 889,718 + LRK53_RS03780 0.88 -0.4 889,718 + LRK53_RS03780 0.88 -1.1 889,719 - LRK53_RS03780 0.88 +1.0 889,719 - LRK53_RS03780 0.88 -2.8
Or see this region's nucleotide sequence