Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03755 and LRK53_RS03760 are separated by 9 nucleotides LRK53_RS03760 and LRK53_RS03765 are separated by 97 nucleotides LRK53_RS03765 and LRK53_RS03770 are separated by 3 nucleotides LRK53_RS03770 and LRK53_RS03775 are separated by 55 nucleotides
LRK53_RS03755: LRK53_RS03755 - glutamate synthase small subunit, at 884,989 to 885,156
_RS03755
LRK53_RS03760: LRK53_RS03760 - NRDE family protein, at 885,166 to 885,945
_RS03760
LRK53_RS03765: LRK53_RS03765 - NAD-dependent DNA ligase LigB, at 886,043 to 887,728
_RS03765
LRK53_RS03770: LRK53_RS03770 - hypothetical protein, at 887,732 to 888,133
_RS03770
LRK53_RS03775: LRK53_RS03775 - DUF938 domain-containing protein, at 888,189 to 888,785
_RS03775
Position (kb) 886
887
888 Strain fitness (log2 ratio) -2
-1
0
1 at 885.154 kb on + strand at 885.154 kb on + strand at 885.154 kb on + strand at 885.154 kb on + strand at 885.154 kb on + strand at 885.155 kb on - strand at 885.155 kb on - strand at 885.155 kb on - strand at 885.424 kb on + strand, within LRK53_RS03760 at 885.424 kb on + strand, within LRK53_RS03760 at 885.424 kb on + strand, within LRK53_RS03760 at 885.425 kb on - strand, within LRK53_RS03760 at 885.425 kb on - strand, within LRK53_RS03760 at 885.425 kb on - strand, within LRK53_RS03760 at 885.532 kb on + strand, within LRK53_RS03760 at 885.532 kb on + strand, within LRK53_RS03760 at 885.533 kb on - strand, within LRK53_RS03760 at 885.893 kb on - strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.957 kb on + strand at 885.958 kb on - strand at 886.006 kb on + strand at 886.188 kb on - strand at 886.226 kb on + strand, within LRK53_RS03765 at 886.227 kb on - strand, within LRK53_RS03765 at 886.227 kb on - strand, within LRK53_RS03765 at 886.227 kb on - strand, within LRK53_RS03765 at 886.324 kb on - strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on + strand, within LRK53_RS03765 at 886.457 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.458 kb on - strand, within LRK53_RS03765 at 886.808 kb on + strand, within LRK53_RS03765 at 886.808 kb on + strand, within LRK53_RS03765 at 886.808 kb on + strand, within LRK53_RS03765 at 886.809 kb on - strand, within LRK53_RS03765 at 886.809 kb on - strand, within LRK53_RS03765 at 886.862 kb on + strand, within LRK53_RS03765 at 886.973 kb on + strand, within LRK53_RS03765 at 887.251 kb on - strand, within LRK53_RS03765 at 887.365 kb on + strand, within LRK53_RS03765 at 887.365 kb on + strand, within LRK53_RS03765 at 887.757 kb on + strand at 887.757 kb on + strand at 887.757 kb on + strand at 887.757 kb on + strand at 887.757 kb on + strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.758 kb on - strand at 887.759 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.760 kb on + strand at 887.761 kb on - strand at 887.761 kb on - strand at 887.761 kb on - strand at 887.979 kb on + strand, within LRK53_RS03770 at 887.979 kb on + strand, within LRK53_RS03770 at 887.979 kb on + strand, within LRK53_RS03770 at 887.979 kb on + strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 887.980 kb on - strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.000 kb on + strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.001 kb on - strand, within LRK53_RS03770 at 888.081 kb on + strand, within LRK53_RS03770 at 888.082 kb on - strand, within LRK53_RS03770 at 888.144 kb on + strand at 888.144 kb on + strand at 888.144 kb on + strand at 888.145 kb on - strand at 888.145 kb on - strand at 888.391 kb on + strand, within LRK53_RS03775 at 888.391 kb on + strand, within LRK53_RS03775 at 888.391 kb on + strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775 at 888.392 kb on - strand, within LRK53_RS03775
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 885,154 + -1.4 885,154 + -1.0 885,154 + +1.0 885,154 + -2.1 885,154 + +1.6 885,155 - -1.7 885,155 - -2.2 885,155 - -1.6 885,424 + LRK53_RS03760 0.33 +0.1 885,424 + LRK53_RS03760 0.33 -0.8 885,424 + LRK53_RS03760 0.33 -1.1 885,425 - LRK53_RS03760 0.33 -0.1 885,425 - LRK53_RS03760 0.33 +0.2 885,425 - LRK53_RS03760 0.33 -2.1 885,532 + LRK53_RS03760 0.47 -0.2 885,532 + LRK53_RS03760 0.47 -0.1 885,533 - LRK53_RS03760 0.47 -1.0 885,893 - -2.7 885,957 + -1.7 885,957 + -1.1 885,957 + -1.3 885,957 + -1.6 885,957 + -1.3 885,957 + -1.5 885,957 + -2.6 885,958 - -2.0 886,006 + -1.2 886,188 - -0.1 886,226 + LRK53_RS03765 0.11 -1.0 886,227 - LRK53_RS03765 0.11 +1.0 886,227 - LRK53_RS03765 0.11 -2.3 886,227 - LRK53_RS03765 0.11 -1.9 886,324 - LRK53_RS03765 0.17 +0.8 886,457 + LRK53_RS03765 0.25 -0.8 886,457 + LRK53_RS03765 0.25 +0.5 886,457 + LRK53_RS03765 0.25 -0.4 886,457 + LRK53_RS03765 0.25 -0.5 886,457 + LRK53_RS03765 0.25 -1.7 886,457 + LRK53_RS03765 0.25 -2.6 886,457 + LRK53_RS03765 0.25 +0.0 886,457 + LRK53_RS03765 0.25 +1.4 886,457 + LRK53_RS03765 0.25 -0.6 886,457 + LRK53_RS03765 0.25 -0.2 886,457 + LRK53_RS03765 0.25 +0.2 886,457 + LRK53_RS03765 0.25 -0.4 886,457 + LRK53_RS03765 0.25 -1.4 886,457 + LRK53_RS03765 0.25 +0.4 886,457 + LRK53_RS03765 0.25 -0.6 886,457 + LRK53_RS03765 0.25 +0.4 886,457 + LRK53_RS03765 0.25 -0.2 886,457 + LRK53_RS03765 0.25 +0.1 886,457 + LRK53_RS03765 0.25 -1.8 886,457 + LRK53_RS03765 0.25 -0.9 886,457 - LRK53_RS03765 0.25 -1.6 886,458 - LRK53_RS03765 0.25 -1.4 886,458 - LRK53_RS03765 0.25 -0.7 886,458 - LRK53_RS03765 0.25 -1.4 886,458 - LRK53_RS03765 0.25 -2.0 886,458 - LRK53_RS03765 0.25 +0.9 886,458 - LRK53_RS03765 0.25 -1.1 886,458 - LRK53_RS03765 0.25 -1.3 886,458 - LRK53_RS03765 0.25 -1.4 886,458 - LRK53_RS03765 0.25 -0.9 886,458 - LRK53_RS03765 0.25 -0.4 886,458 - LRK53_RS03765 0.25 -0.7 886,458 - LRK53_RS03765 0.25 +0.8 886,458 - LRK53_RS03765 0.25 -0.3 886,458 - LRK53_RS03765 0.25 -0.7 886,458 - LRK53_RS03765 0.25 +0.2 886,458 - LRK53_RS03765 0.25 -0.0 886,458 - LRK53_RS03765 0.25 +0.7 886,458 - LRK53_RS03765 0.25 -0.3 886,458 - LRK53_RS03765 0.25 -1.9 886,458 - LRK53_RS03765 0.25 -0.4 886,458 - LRK53_RS03765 0.25 +1.6 886,458 - LRK53_RS03765 0.25 -1.3 886,458 - LRK53_RS03765 0.25 -0.1 886,458 - LRK53_RS03765 0.25 +1.1 886,458 - LRK53_RS03765 0.25 -1.4 886,458 - LRK53_RS03765 0.25 +1.5 886,458 - LRK53_RS03765 0.25 -0.9 886,458 - LRK53_RS03765 0.25 +0.3 886,808 + LRK53_RS03765 0.45 +0.0 886,808 + LRK53_RS03765 0.45 -2.2 886,808 + LRK53_RS03765 0.45 -1.7 886,809 - LRK53_RS03765 0.45 -2.2 886,809 - LRK53_RS03765 0.45 +0.7 886,862 + LRK53_RS03765 0.49 -2.0 886,973 + LRK53_RS03765 0.55 +0.1 887,251 - LRK53_RS03765 0.72 -0.0 887,365 + LRK53_RS03765 0.78 +0.8 887,365 + LRK53_RS03765 0.78 -0.3 887,757 + -0.4 887,757 + -1.2 887,757 + -1.4 887,757 + -0.6 887,757 + -0.9 887,758 - -1.2 887,758 - +0.8 887,758 - -1.4 887,758 - -1.3 887,758 - -0.4 887,759 + -0.7 887,760 + +0.0 887,760 + +0.8 887,760 + -1.4 887,760 + +1.2 887,760 + -2.3 887,760 + -0.5 887,761 - -0.4 887,761 - +1.0 887,761 - -1.4 887,979 + LRK53_RS03770 0.61 -1.1 887,979 + LRK53_RS03770 0.61 -0.4 887,979 + LRK53_RS03770 0.61 -1.1 887,979 + LRK53_RS03770 0.61 +0.6 887,980 - LRK53_RS03770 0.62 -1.6 887,980 - LRK53_RS03770 0.62 -0.2 887,980 - LRK53_RS03770 0.62 -0.2 887,980 - LRK53_RS03770 0.62 +1.3 887,980 - LRK53_RS03770 0.62 -0.9 887,980 - LRK53_RS03770 0.62 +1.2 888,000 + LRK53_RS03770 0.67 -2.0 888,000 + LRK53_RS03770 0.67 -1.3 888,000 + LRK53_RS03770 0.67 -0.4 888,000 + LRK53_RS03770 0.67 -1.6 888,000 + LRK53_RS03770 0.67 +0.4 888,001 - LRK53_RS03770 0.67 -0.4 888,001 - LRK53_RS03770 0.67 -0.1 888,001 - LRK53_RS03770 0.67 +0.2 888,001 - LRK53_RS03770 0.67 -1.1 888,001 - LRK53_RS03770 0.67 -0.6 888,081 + LRK53_RS03770 0.87 +0.2 888,082 - LRK53_RS03770 0.87 -0.8 888,144 + +1.2 888,144 + -2.2 888,144 + -0.8 888,145 - -2.3 888,145 - -0.8 888,391 + LRK53_RS03775 0.34 +0.3 888,391 + LRK53_RS03775 0.34 -0.1 888,391 + LRK53_RS03775 0.34 +0.2 888,392 - LRK53_RS03775 0.34 -1.1 888,392 - LRK53_RS03775 0.34 -1.4 888,392 - LRK53_RS03775 0.34 -1.5 888,392 - LRK53_RS03775 0.34 -0.5 888,392 - LRK53_RS03775 0.34 -1.8 888,392 - LRK53_RS03775 0.34 -1.1 888,392 - LRK53_RS03775 0.34 -0.1 888,392 - LRK53_RS03775 0.34 -2.6 888,392 - LRK53_RS03775 0.34 -1.1
Or see this region's nucleotide sequence