Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03390 and LRK53_RS03395 overlap by 4 nucleotides LRK53_RS03395 and LRK53_RS03400 are separated by 165 nucleotides LRK53_RS03400 and LRK53_RS03405 are separated by 127 nucleotides
LRK53_RS03390: LRK53_RS03390 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 803,721 to 804,317
_RS03390
LRK53_RS03395: LRK53_RS03395 - aminoacyl-tRNA hydrolase, at 804,314 to 804,736
_RS03395
LRK53_RS03400: LRK53_RS03400 - pseudouridine synthase, at 804,902 to 805,609
_RS03400
LRK53_RS03405: LRK53_RS03405 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 805,737 to 807,386
_RS03405
Position (kb) 804
805
806 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 804.747 kb on + strand at 804.747 kb on + strand at 804.747 kb on + strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.748 kb on - strand at 804.955 kb on - strand at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.065 kb on + strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.066 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.189 kb on - strand, within LRK53_RS03400 at 805.353 kb on + strand, within LRK53_RS03400 at 805.353 kb on + strand, within LRK53_RS03400 at 805.354 kb on - strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.467 kb on + strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.468 kb on - strand, within LRK53_RS03400 at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.631 kb on - strand at 805.726 kb on + strand at 805.809 kb on - strand at 805.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 804,747 + +0.7 804,747 + -1.3 804,747 + +0.8 804,748 - -1.0 804,748 - +2.0 804,748 - -0.7 804,955 - -0.8 805,065 + LRK53_RS03400 0.23 -1.3 805,065 + LRK53_RS03400 0.23 +0.1 805,065 + LRK53_RS03400 0.23 -1.0 805,065 + LRK53_RS03400 0.23 -2.7 805,065 + LRK53_RS03400 0.23 -0.1 805,065 + LRK53_RS03400 0.23 -0.5 805,065 + LRK53_RS03400 0.23 +0.4 805,066 - LRK53_RS03400 0.23 +0.3 805,066 - LRK53_RS03400 0.23 -2.0 805,066 - LRK53_RS03400 0.23 -0.5 805,066 - LRK53_RS03400 0.23 -2.9 805,066 - LRK53_RS03400 0.23 +0.5 805,066 - LRK53_RS03400 0.23 +0.3 805,066 - LRK53_RS03400 0.23 -1.4 805,189 - LRK53_RS03400 0.41 -0.5 805,189 - LRK53_RS03400 0.41 -1.2 805,189 - LRK53_RS03400 0.41 -1.0 805,353 + LRK53_RS03400 0.64 +0.2 805,353 + LRK53_RS03400 0.64 -0.1 805,354 - LRK53_RS03400 0.64 -0.5 805,467 + LRK53_RS03400 0.80 -0.6 805,467 + LRK53_RS03400 0.80 -2.1 805,467 + LRK53_RS03400 0.80 -1.5 805,467 + LRK53_RS03400 0.80 -0.5 805,467 + LRK53_RS03400 0.80 -0.7 805,467 + LRK53_RS03400 0.80 -0.3 805,468 - LRK53_RS03400 0.80 -0.4 805,468 - LRK53_RS03400 0.80 +0.1 805,468 - LRK53_RS03400 0.80 +0.5 805,631 - -0.9 805,631 - -0.3 805,631 - -0.8 805,631 - -0.1 805,631 - +1.3 805,631 - -1.1 805,631 - -0.1 805,631 - -1.4 805,726 + -0.9 805,809 - -0.2 805,809 - -1.2
Or see this region's nucleotide sequence