Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS03045 and LRK53_RS03050 are separated by 147 nucleotides LRK53_RS03050 and LRK53_RS03055 overlap by 20 nucleotides
LRK53_RS03045: LRK53_RS03045 - multicopper oxidase domain-containing protein, at 707,319 to 709,298
_RS03045
LRK53_RS03050: LRK53_RS03050 - ComF family protein, at 709,446 to 710,180
_RS03050
LRK53_RS03055: LRK53_RS03055 - CehA/McbA family metallohydrolase, at 710,161 to 711,720
_RS03055
Position (kb) 709
710
711 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 708.472 kb on + strand, within LRK53_RS03045 at 708.472 kb on + strand, within LRK53_RS03045 at 708.473 kb on - strand, within LRK53_RS03045 at 708.473 kb on - strand, within LRK53_RS03045 at 708.473 kb on - strand, within LRK53_RS03045 at 708.473 kb on - strand, within LRK53_RS03045 at 708.473 kb on - strand, within LRK53_RS03045 at 708.817 kb on + strand, within LRK53_RS03045 at 708.817 kb on + strand, within LRK53_RS03045 at 708.817 kb on + strand, within LRK53_RS03045 at 708.817 kb on + strand, within LRK53_RS03045 at 708.817 kb on + strand, within LRK53_RS03045 at 708.818 kb on - strand, within LRK53_RS03045 at 708.818 kb on - strand, within LRK53_RS03045 at 708.829 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.886 kb on + strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.887 kb on - strand, within LRK53_RS03045 at 708.925 kb on + strand, within LRK53_RS03045 at 708.925 kb on + strand, within LRK53_RS03045 at 708.988 kb on + strand, within LRK53_RS03045 at 708.988 kb on + strand, within LRK53_RS03045 at 708.988 kb on + strand, within LRK53_RS03045 at 708.988 kb on + strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 708.989 kb on - strand, within LRK53_RS03045 at 709.153 kb on + strand at 709.153 kb on + strand at 709.154 kb on - strand at 709.154 kb on - strand at 709.154 kb on - strand at 709.154 kb on - strand at 709.162 kb on + strand at 709.162 kb on + strand at 709.162 kb on + strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.163 kb on - strand at 709.278 kb on - strand at 709.278 kb on - strand at 709.291 kb on - strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.367 kb on + strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.368 kb on - strand at 709.378 kb on + strand at 709.379 kb on - strand at 709.395 kb on - strand at 709.395 kb on - strand at 709.395 kb on - strand at 709.416 kb on + strand at 709.417 kb on - strand at 709.725 kb on + strand, within LRK53_RS03050 at 709.725 kb on + strand, within LRK53_RS03050 at 709.726 kb on - strand, within LRK53_RS03050 at 709.726 kb on - strand, within LRK53_RS03050 at 709.857 kb on + strand, within LRK53_RS03050 at 709.858 kb on - strand, within LRK53_RS03050 at 710.183 kb on + strand at 710.184 kb on - strand at 710.184 kb on - strand at 710.184 kb on - strand at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.344 kb on + strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.345 kb on - strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.347 kb on + strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.348 kb on - strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.743 kb on + strand, within LRK53_RS03055 at 710.744 kb on - strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.993 kb on + strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 710.994 kb on - strand, within LRK53_RS03055 at 711.179 kb on + strand, within LRK53_RS03055
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 708,472 + LRK53_RS03045 0.58 -1.2 708,472 + LRK53_RS03045 0.58 -0.7 708,473 - LRK53_RS03045 0.58 -1.8 708,473 - LRK53_RS03045 0.58 -0.6 708,473 - LRK53_RS03045 0.58 -1.4 708,473 - LRK53_RS03045 0.58 +0.1 708,473 - LRK53_RS03045 0.58 -1.2 708,817 + LRK53_RS03045 0.76 -2.1 708,817 + LRK53_RS03045 0.76 -0.8 708,817 + LRK53_RS03045 0.76 -0.2 708,817 + LRK53_RS03045 0.76 +0.2 708,817 + LRK53_RS03045 0.76 -0.6 708,818 - LRK53_RS03045 0.76 +0.1 708,818 - LRK53_RS03045 0.76 +1.4 708,829 + LRK53_RS03045 0.76 -0.4 708,886 + LRK53_RS03045 0.79 -1.0 708,886 + LRK53_RS03045 0.79 +0.1 708,886 + LRK53_RS03045 0.79 -0.9 708,886 + LRK53_RS03045 0.79 -2.3 708,886 + LRK53_RS03045 0.79 -0.9 708,886 + LRK53_RS03045 0.79 -0.6 708,886 + LRK53_RS03045 0.79 -0.3 708,886 + LRK53_RS03045 0.79 -0.8 708,886 + LRK53_RS03045 0.79 -1.1 708,886 + LRK53_RS03045 0.79 -2.3 708,886 + LRK53_RS03045 0.79 -1.7 708,886 + LRK53_RS03045 0.79 +0.1 708,886 + LRK53_RS03045 0.79 -0.9 708,886 + LRK53_RS03045 0.79 -0.7 708,886 + LRK53_RS03045 0.79 -1.9 708,886 + LRK53_RS03045 0.79 -1.4 708,886 + LRK53_RS03045 0.79 -0.2 708,886 + LRK53_RS03045 0.79 +0.6 708,886 + LRK53_RS03045 0.79 -1.5 708,886 + LRK53_RS03045 0.79 -0.2 708,886 + LRK53_RS03045 0.79 +0.5 708,886 + LRK53_RS03045 0.79 -1.1 708,886 + LRK53_RS03045 0.79 +0.0 708,886 + LRK53_RS03045 0.79 +0.4 708,886 + LRK53_RS03045 0.79 -0.5 708,886 + LRK53_RS03045 0.79 +0.2 708,886 + LRK53_RS03045 0.79 -0.2 708,886 + LRK53_RS03045 0.79 +0.5 708,887 - LRK53_RS03045 0.79 +0.6 708,887 - LRK53_RS03045 0.79 -0.6 708,887 - LRK53_RS03045 0.79 -0.1 708,887 - LRK53_RS03045 0.79 -0.3 708,887 - LRK53_RS03045 0.79 +0.4 708,887 - LRK53_RS03045 0.79 -1.0 708,887 - LRK53_RS03045 0.79 -0.2 708,887 - LRK53_RS03045 0.79 -1.6 708,887 - LRK53_RS03045 0.79 -0.6 708,887 - LRK53_RS03045 0.79 +0.0 708,887 - LRK53_RS03045 0.79 +0.0 708,887 - LRK53_RS03045 0.79 +1.3 708,887 - LRK53_RS03045 0.79 -2.2 708,887 - LRK53_RS03045 0.79 +0.3 708,887 - LRK53_RS03045 0.79 -2.3 708,887 - LRK53_RS03045 0.79 -0.5 708,887 - LRK53_RS03045 0.79 -1.7 708,887 - LRK53_RS03045 0.79 -0.5 708,887 - LRK53_RS03045 0.79 -0.8 708,887 - LRK53_RS03045 0.79 -0.5 708,887 - LRK53_RS03045 0.79 +0.3 708,887 - LRK53_RS03045 0.79 -2.3 708,887 - LRK53_RS03045 0.79 +0.2 708,887 - LRK53_RS03045 0.79 +1.0 708,925 + LRK53_RS03045 0.81 -1.5 708,925 + LRK53_RS03045 0.81 -0.4 708,988 + LRK53_RS03045 0.84 -2.2 708,988 + LRK53_RS03045 0.84 -1.5 708,988 + LRK53_RS03045 0.84 -2.0 708,988 + LRK53_RS03045 0.84 -1.2 708,989 - LRK53_RS03045 0.84 +0.1 708,989 - LRK53_RS03045 0.84 -0.7 708,989 - LRK53_RS03045 0.84 -1.6 708,989 - LRK53_RS03045 0.84 -1.1 708,989 - LRK53_RS03045 0.84 -0.4 708,989 - LRK53_RS03045 0.84 +0.1 708,989 - LRK53_RS03045 0.84 -0.7 708,989 - LRK53_RS03045 0.84 -0.4 708,989 - LRK53_RS03045 0.84 -3.8 708,989 - LRK53_RS03045 0.84 -1.7 708,989 - LRK53_RS03045 0.84 +0.4 709,153 + -1.4 709,153 + -0.8 709,154 - -1.3 709,154 - -0.2 709,154 - -0.2 709,154 - -1.8 709,162 + -1.1 709,162 + +0.3 709,162 + -0.7 709,163 - -1.0 709,163 - +1.4 709,163 - -1.5 709,163 - +0.6 709,163 - -1.5 709,163 - -1.3 709,163 - -1.7 709,163 - -1.5 709,163 - +1.5 709,163 - -1.1 709,278 - +0.5 709,278 - -0.2 709,291 - -2.0 709,367 + -0.4 709,367 + +1.6 709,367 + +0.3 709,367 + -0.7 709,367 + -0.5 709,367 + -2.6 709,367 + -1.4 709,367 + -1.4 709,367 + -1.1 709,367 + -0.8 709,367 + -0.1 709,367 + -1.2 709,367 + -1.3 709,367 + -2.3 709,367 + -0.5 709,367 + -1.6 709,367 + -0.6 709,367 + -1.5 709,367 + -1.8 709,367 + -0.8 709,367 + -0.6 709,367 + -1.7 709,368 - -1.2 709,368 - -1.3 709,368 - -0.0 709,368 - -0.7 709,368 - -1.2 709,368 - +0.2 709,368 - -0.8 709,368 - -0.2 709,368 - -0.8 709,368 - -1.2 709,368 - -0.2 709,368 - -0.3 709,378 + -0.7 709,379 - -0.7 709,395 - -0.6 709,395 - -1.6 709,395 - -0.8 709,416 + -1.5 709,417 - +0.9 709,725 + LRK53_RS03050 0.38 -1.1 709,725 + LRK53_RS03050 0.38 -0.8 709,726 - LRK53_RS03050 0.38 -1.7 709,726 - LRK53_RS03050 0.38 -1.1 709,857 + LRK53_RS03050 0.56 -0.2 709,858 - LRK53_RS03050 0.56 -0.3 710,183 + -0.4 710,184 - -1.5 710,184 - +0.0 710,184 - -0.1 710,344 + LRK53_RS03055 0.12 -2.0 710,344 + LRK53_RS03055 0.12 +0.4 710,344 + LRK53_RS03055 0.12 +1.0 710,344 + LRK53_RS03055 0.12 -0.7 710,344 + LRK53_RS03055 0.12 -2.1 710,344 + LRK53_RS03055 0.12 +0.2 710,344 + LRK53_RS03055 0.12 -0.1 710,344 + LRK53_RS03055 0.12 +1.1 710,344 + LRK53_RS03055 0.12 -0.7 710,344 + LRK53_RS03055 0.12 -0.7 710,345 - LRK53_RS03055 0.12 +1.0 710,345 - LRK53_RS03055 0.12 -1.2 710,345 - LRK53_RS03055 0.12 -1.0 710,345 - LRK53_RS03055 0.12 -1.3 710,345 - LRK53_RS03055 0.12 -1.9 710,345 - LRK53_RS03055 0.12 -0.5 710,345 - LRK53_RS03055 0.12 -0.1 710,347 + LRK53_RS03055 0.12 -0.9 710,347 + LRK53_RS03055 0.12 -2.2 710,347 + LRK53_RS03055 0.12 -0.1 710,347 + LRK53_RS03055 0.12 +0.5 710,347 + LRK53_RS03055 0.12 -2.2 710,347 + LRK53_RS03055 0.12 -1.8 710,347 + LRK53_RS03055 0.12 -1.9 710,347 + LRK53_RS03055 0.12 +0.0 710,347 + LRK53_RS03055 0.12 -1.5 710,347 + LRK53_RS03055 0.12 -0.4 710,348 - LRK53_RS03055 0.12 -0.8 710,348 - LRK53_RS03055 0.12 -1.1 710,348 - LRK53_RS03055 0.12 +0.6 710,348 - LRK53_RS03055 0.12 -0.3 710,348 - LRK53_RS03055 0.12 -1.6 710,348 - LRK53_RS03055 0.12 -1.9 710,348 - LRK53_RS03055 0.12 -0.7 710,743 + LRK53_RS03055 0.37 +1.2 710,743 + LRK53_RS03055 0.37 -1.2 710,743 + LRK53_RS03055 0.37 +0.4 710,743 + LRK53_RS03055 0.37 -1.2 710,743 + LRK53_RS03055 0.37 -0.3 710,743 + LRK53_RS03055 0.37 -1.3 710,743 + LRK53_RS03055 0.37 -0.4 710,743 + LRK53_RS03055 0.37 -2.4 710,743 + LRK53_RS03055 0.37 +0.3 710,744 - LRK53_RS03055 0.37 -0.5 710,993 + LRK53_RS03055 0.53 -0.7 710,993 + LRK53_RS03055 0.53 -1.2 710,993 + LRK53_RS03055 0.53 -2.3 710,993 + LRK53_RS03055 0.53 -1.5 710,993 + LRK53_RS03055 0.53 -0.2 710,993 + LRK53_RS03055 0.53 -1.8 710,993 + LRK53_RS03055 0.53 -0.3 710,993 + LRK53_RS03055 0.53 -0.3 710,994 - LRK53_RS03055 0.53 -0.9 710,994 - LRK53_RS03055 0.53 -0.3 710,994 - LRK53_RS03055 0.53 -1.4 710,994 - LRK53_RS03055 0.53 -1.5 710,994 - LRK53_RS03055 0.53 -1.7 710,994 - LRK53_RS03055 0.53 +0.5 710,994 - LRK53_RS03055 0.53 -1.8 710,994 - LRK53_RS03055 0.53 -2.0 710,994 - LRK53_RS03055 0.53 -1.4 710,994 - LRK53_RS03055 0.53 -1.6 711,179 + LRK53_RS03055 0.65 -0.7
Or see this region's nucleotide sequence