Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS02740 and LRK53_RS02745 are separated by 143 nucleotides LRK53_RS02745 and LRK53_RS02750 overlap by 4 nucleotides LRK53_RS02750 and LRK53_RS02755 overlap by 4 nucleotides LRK53_RS02755 and LRK53_RS02760 overlap by 4 nucleotides
LRK53_RS02740: LRK53_RS02740 - type II secretion system major pseudopilin GspG, at 631,526 to 631,894
_RS02740
LRK53_RS02745: LRK53_RS02745 - GspH/FimT family pseudopilin, at 632,038 to 632,457
_RS02745
LRK53_RS02750: LRK53_RS02750 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 632,454 to 632,960
_RS02750
LRK53_RS02755: LRK53_RS02755 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 632,957 to 633,613
_RS02755
LRK53_RS02760: LRK53_RS02760 - type II secretion system protein GspK, at 633,610 to 634,479
_RS02760
Position (kb) 632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 631.456 kb on + strand at 631.456 kb on + strand at 631.456 kb on + strand at 631.457 kb on - strand at 631.457 kb on - strand at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.607 kb on + strand, within LRK53_RS02740 at 631.608 kb on - strand, within LRK53_RS02740 at 631.608 kb on - strand, within LRK53_RS02740 at 631.608 kb on - strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.658 kb on + strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.659 kb on - strand, within LRK53_RS02740 at 631.832 kb on + strand, within LRK53_RS02740 at 631.832 kb on + strand, within LRK53_RS02740 at 631.833 kb on - strand, within LRK53_RS02740 at 631.865 kb on + strand at 631.866 kb on - strand at 631.968 kb on + strand at 631.968 kb on + strand at 631.969 kb on - strand at 631.969 kb on - strand at 631.969 kb on - strand at 631.969 kb on - strand at 631.969 kb on - strand at 631.969 kb on - strand at 631.975 kb on + strand at 631.976 kb on - strand at 632.081 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.227 kb on + strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.228 kb on - strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.252 kb on + strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.253 kb on - strand, within LRK53_RS02745 at 632.367 kb on + strand, within LRK53_RS02745 at 632.367 kb on + strand, within LRK53_RS02745 at 632.367 kb on + strand, within LRK53_RS02745 at 632.367 kb on + strand, within LRK53_RS02745 at 632.367 kb on + strand, within LRK53_RS02745 at 632.368 kb on - strand, within LRK53_RS02745 at 632.368 kb on - strand, within LRK53_RS02745 at 632.368 kb on - strand, within LRK53_RS02745 at 632.673 kb on + strand, within LRK53_RS02750 at 632.772 kb on + strand, within LRK53_RS02750 at 632.772 kb on + strand, within LRK53_RS02750 at 632.772 kb on + strand, within LRK53_RS02750 at 632.844 kb on + strand, within LRK53_RS02750 at 632.844 kb on + strand, within LRK53_RS02750 at 632.844 kb on + strand, within LRK53_RS02750 at 632.844 kb on + strand, within LRK53_RS02750 at 632.844 kb on + strand, within LRK53_RS02750 at 632.844 kb on + strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 632.845 kb on - strand, within LRK53_RS02750 at 633.033 kb on + strand, within LRK53_RS02755 at 633.033 kb on + strand, within LRK53_RS02755 at 633.033 kb on + strand, within LRK53_RS02755 at 633.034 kb on - strand, within LRK53_RS02755 at 633.034 kb on - strand, within LRK53_RS02755 at 633.034 kb on - strand, within LRK53_RS02755 at 633.035 kb on + strand, within LRK53_RS02755 at 633.035 kb on + strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.036 kb on - strand, within LRK53_RS02755 at 633.191 kb on + strand, within LRK53_RS02755 at 633.191 kb on + strand, within LRK53_RS02755 at 633.192 kb on - strand, within LRK53_RS02755 at 633.192 kb on - strand, within LRK53_RS02755 at 633.192 kb on - strand, within LRK53_RS02755 at 633.192 kb on - strand, within LRK53_RS02755 at 633.221 kb on + strand, within LRK53_RS02755 at 633.221 kb on + strand, within LRK53_RS02755 at 633.221 kb on + strand, within LRK53_RS02755 at 633.222 kb on - strand, within LRK53_RS02755 at 633.222 kb on - strand, within LRK53_RS02755 at 633.242 kb on + strand, within LRK53_RS02755 at 633.242 kb on + strand, within LRK53_RS02755 at 633.413 kb on + strand, within LRK53_RS02755 at 633.775 kb on + strand, within LRK53_RS02760 at 633.775 kb on + strand, within LRK53_RS02760 at 633.775 kb on + strand, within LRK53_RS02760 at 633.808 kb on + strand, within LRK53_RS02760 at 633.808 kb on + strand, within LRK53_RS02760 at 633.809 kb on - strand, within LRK53_RS02760 at 633.809 kb on - strand, within LRK53_RS02760 at 633.809 kb on - strand, within LRK53_RS02760 at 633.809 kb on - strand, within LRK53_RS02760 at 633.809 kb on - strand, within LRK53_RS02760 at 633.862 kb on + strand, within LRK53_RS02760 at 633.862 kb on + strand, within LRK53_RS02760 at 633.862 kb on + strand, within LRK53_RS02760 at 633.862 kb on + strand, within LRK53_RS02760 at 633.862 kb on + strand, within LRK53_RS02760 at 633.863 kb on - strand, within LRK53_RS02760 at 633.863 kb on - strand, within LRK53_RS02760 at 633.863 kb on - strand, within LRK53_RS02760 at 633.874 kb on + strand, within LRK53_RS02760 at 633.874 kb on + strand, within LRK53_RS02760 at 633.874 kb on + strand, within LRK53_RS02760 at 633.874 kb on + strand, within LRK53_RS02760 at 633.875 kb on - strand, within LRK53_RS02760 at 633.875 kb on - strand, within LRK53_RS02760 at 633.875 kb on - strand, within LRK53_RS02760 at 633.875 kb on - strand, within LRK53_RS02760 at 633.875 kb on - strand, within LRK53_RS02760
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 631,456 + -0.5 631,456 + -2.3 631,456 + -0.4 631,457 - +1.2 631,457 - -2.5 631,607 + LRK53_RS02740 0.22 -2.4 631,607 + LRK53_RS02740 0.22 -0.8 631,607 + LRK53_RS02740 0.22 -0.2 631,607 + LRK53_RS02740 0.22 -0.7 631,607 + LRK53_RS02740 0.22 -0.0 631,607 + LRK53_RS02740 0.22 -1.1 631,607 + LRK53_RS02740 0.22 +0.2 631,607 + LRK53_RS02740 0.22 -1.0 631,608 - LRK53_RS02740 0.22 -3.3 631,608 - LRK53_RS02740 0.22 -0.3 631,608 - LRK53_RS02740 0.22 -2.8 631,658 + LRK53_RS02740 0.36 -2.4 631,658 + LRK53_RS02740 0.36 -2.1 631,658 + LRK53_RS02740 0.36 -1.4 631,658 + LRK53_RS02740 0.36 +0.5 631,658 + LRK53_RS02740 0.36 +0.4 631,658 + LRK53_RS02740 0.36 -1.1 631,658 + LRK53_RS02740 0.36 -0.5 631,658 + LRK53_RS02740 0.36 -2.0 631,659 - LRK53_RS02740 0.36 -0.4 631,659 - LRK53_RS02740 0.36 -0.8 631,659 - LRK53_RS02740 0.36 -0.4 631,659 - LRK53_RS02740 0.36 -0.8 631,659 - LRK53_RS02740 0.36 -3.5 631,659 - LRK53_RS02740 0.36 -0.1 631,659 - LRK53_RS02740 0.36 -0.3 631,659 - LRK53_RS02740 0.36 -0.4 631,832 + LRK53_RS02740 0.83 -0.4 631,832 + LRK53_RS02740 0.83 +0.4 631,833 - LRK53_RS02740 0.83 -1.6 631,865 + -1.8 631,866 - +0.0 631,968 + -1.3 631,968 + -1.8 631,969 - +0.3 631,969 - +0.1 631,969 - +1.2 631,969 - +0.1 631,969 - +0.1 631,969 - -0.7 631,975 + -0.5 631,976 - +0.3 632,081 + LRK53_RS02745 0.10 -1.4 632,227 + LRK53_RS02745 0.45 -0.4 632,227 + LRK53_RS02745 0.45 -0.7 632,227 + LRK53_RS02745 0.45 -1.6 632,227 + LRK53_RS02745 0.45 -1.3 632,227 + LRK53_RS02745 0.45 +0.4 632,227 + LRK53_RS02745 0.45 +0.1 632,227 + LRK53_RS02745 0.45 +0.6 632,227 + LRK53_RS02745 0.45 -1.4 632,228 - LRK53_RS02745 0.45 -0.8 632,228 - LRK53_RS02745 0.45 -1.7 632,228 - LRK53_RS02745 0.45 -0.9 632,228 - LRK53_RS02745 0.45 +1.2 632,228 - LRK53_RS02745 0.45 +0.4 632,228 - LRK53_RS02745 0.45 +0.3 632,228 - LRK53_RS02745 0.45 -0.7 632,228 - LRK53_RS02745 0.45 -0.3 632,228 - LRK53_RS02745 0.45 -1.6 632,228 - LRK53_RS02745 0.45 -1.0 632,228 - LRK53_RS02745 0.45 +0.2 632,252 + LRK53_RS02745 0.51 -0.5 632,252 + LRK53_RS02745 0.51 -0.8 632,252 + LRK53_RS02745 0.51 -2.0 632,252 + LRK53_RS02745 0.51 +0.3 632,252 + LRK53_RS02745 0.51 +0.4 632,252 + LRK53_RS02745 0.51 -2.1 632,252 + LRK53_RS02745 0.51 -0.5 632,252 + LRK53_RS02745 0.51 -0.4 632,252 + LRK53_RS02745 0.51 +0.5 632,252 + LRK53_RS02745 0.51 -0.6 632,252 + LRK53_RS02745 0.51 -0.1 632,252 + LRK53_RS02745 0.51 -1.5 632,252 + LRK53_RS02745 0.51 +0.3 632,252 + LRK53_RS02745 0.51 -0.1 632,252 + LRK53_RS02745 0.51 -1.0 632,252 + LRK53_RS02745 0.51 -1.5 632,252 + LRK53_RS02745 0.51 +2.2 632,252 + LRK53_RS02745 0.51 -0.3 632,252 + LRK53_RS02745 0.51 +0.4 632,252 + LRK53_RS02745 0.51 -1.0 632,252 + LRK53_RS02745 0.51 -1.8 632,252 + LRK53_RS02745 0.51 -2.4 632,253 - LRK53_RS02745 0.51 -0.9 632,253 - LRK53_RS02745 0.51 +0.1 632,253 - LRK53_RS02745 0.51 -1.0 632,253 - LRK53_RS02745 0.51 -0.4 632,253 - LRK53_RS02745 0.51 -2.3 632,253 - LRK53_RS02745 0.51 -1.0 632,253 - LRK53_RS02745 0.51 -0.6 632,253 - LRK53_RS02745 0.51 +0.4 632,253 - LRK53_RS02745 0.51 +0.4 632,253 - LRK53_RS02745 0.51 -1.8 632,253 - LRK53_RS02745 0.51 +1.9 632,253 - LRK53_RS02745 0.51 -1.1 632,253 - LRK53_RS02745 0.51 -1.4 632,253 - LRK53_RS02745 0.51 -1.0 632,253 - LRK53_RS02745 0.51 -0.3 632,253 - LRK53_RS02745 0.51 -0.8 632,253 - LRK53_RS02745 0.51 +2.2 632,253 - LRK53_RS02745 0.51 -3.0 632,253 - LRK53_RS02745 0.51 -1.7 632,253 - LRK53_RS02745 0.51 +0.3 632,253 - LRK53_RS02745 0.51 -1.1 632,253 - LRK53_RS02745 0.51 -0.1 632,253 - LRK53_RS02745 0.51 -2.4 632,253 - LRK53_RS02745 0.51 -2.4 632,253 - LRK53_RS02745 0.51 -1.0 632,253 - LRK53_RS02745 0.51 -0.9 632,253 - LRK53_RS02745 0.51 -0.4 632,253 - LRK53_RS02745 0.51 +1.0 632,253 - LRK53_RS02745 0.51 -1.4 632,253 - LRK53_RS02745 0.51 -0.6 632,253 - LRK53_RS02745 0.51 -1.1 632,253 - LRK53_RS02745 0.51 +0.4 632,367 + LRK53_RS02745 0.78 +0.5 632,367 + LRK53_RS02745 0.78 +1.3 632,367 + LRK53_RS02745 0.78 +1.6 632,367 + LRK53_RS02745 0.78 -1.3 632,367 + LRK53_RS02745 0.78 -0.9 632,368 - LRK53_RS02745 0.79 -1.1 632,368 - LRK53_RS02745 0.79 -0.8 632,368 - LRK53_RS02745 0.79 -1.0 632,673 + LRK53_RS02750 0.43 -0.8 632,772 + LRK53_RS02750 0.63 -1.1 632,772 + LRK53_RS02750 0.63 -0.7 632,772 + LRK53_RS02750 0.63 -1.3 632,844 + LRK53_RS02750 0.77 -0.9 632,844 + LRK53_RS02750 0.77 +0.1 632,844 + LRK53_RS02750 0.77 +0.2 632,844 + LRK53_RS02750 0.77 -1.0 632,844 + LRK53_RS02750 0.77 +0.3 632,844 + LRK53_RS02750 0.77 -1.1 632,845 - LRK53_RS02750 0.77 -1.3 632,845 - LRK53_RS02750 0.77 -1.6 632,845 - LRK53_RS02750 0.77 -1.3 632,845 - LRK53_RS02750 0.77 -2.9 632,845 - LRK53_RS02750 0.77 -1.0 632,845 - LRK53_RS02750 0.77 -3.7 632,845 - LRK53_RS02750 0.77 -1.4 633,033 + LRK53_RS02755 0.12 -1.6 633,033 + LRK53_RS02755 0.12 -0.1 633,033 + LRK53_RS02755 0.12 -0.7 633,034 - LRK53_RS02755 0.12 +1.6 633,034 - LRK53_RS02755 0.12 -0.2 633,034 - LRK53_RS02755 0.12 -0.7 633,035 + LRK53_RS02755 0.12 -1.1 633,035 + LRK53_RS02755 0.12 -0.3 633,036 - LRK53_RS02755 0.12 -0.4 633,036 - LRK53_RS02755 0.12 -2.1 633,036 - LRK53_RS02755 0.12 -1.1 633,036 - LRK53_RS02755 0.12 -0.2 633,036 - LRK53_RS02755 0.12 -1.8 633,036 - LRK53_RS02755 0.12 +0.3 633,036 - LRK53_RS02755 0.12 -0.6 633,036 - LRK53_RS02755 0.12 -0.5 633,036 - LRK53_RS02755 0.12 -1.8 633,036 - LRK53_RS02755 0.12 -0.2 633,191 + LRK53_RS02755 0.36 -0.7 633,191 + LRK53_RS02755 0.36 +0.5 633,192 - LRK53_RS02755 0.36 -1.7 633,192 - LRK53_RS02755 0.36 -1.0 633,192 - LRK53_RS02755 0.36 -2.0 633,192 - LRK53_RS02755 0.36 -3.4 633,221 + LRK53_RS02755 0.40 -0.6 633,221 + LRK53_RS02755 0.40 -0.6 633,221 + LRK53_RS02755 0.40 -1.3 633,222 - LRK53_RS02755 0.40 +1.1 633,222 - LRK53_RS02755 0.40 +0.3 633,242 + LRK53_RS02755 0.43 -2.5 633,242 + LRK53_RS02755 0.43 +0.1 633,413 + LRK53_RS02755 0.69 +1.1 633,775 + LRK53_RS02760 0.19 -2.3 633,775 + LRK53_RS02760 0.19 -0.7 633,775 + LRK53_RS02760 0.19 -3.7 633,808 + LRK53_RS02760 0.23 -1.3 633,808 + LRK53_RS02760 0.23 -1.8 633,809 - LRK53_RS02760 0.23 +0.3 633,809 - LRK53_RS02760 0.23 -1.4 633,809 - LRK53_RS02760 0.23 -1.5 633,809 - LRK53_RS02760 0.23 -1.4 633,809 - LRK53_RS02760 0.23 +0.3 633,862 + LRK53_RS02760 0.29 -0.3 633,862 + LRK53_RS02760 0.29 -0.6 633,862 + LRK53_RS02760 0.29 -0.9 633,862 + LRK53_RS02760 0.29 -0.6 633,862 + LRK53_RS02760 0.29 +0.4 633,863 - LRK53_RS02760 0.29 -0.9 633,863 - LRK53_RS02760 0.29 +0.7 633,863 - LRK53_RS02760 0.29 -0.8 633,874 + LRK53_RS02760 0.30 +0.4 633,874 + LRK53_RS02760 0.30 -1.4 633,874 + LRK53_RS02760 0.30 -0.9 633,874 + LRK53_RS02760 0.30 -1.6 633,875 - LRK53_RS02760 0.30 +0.1 633,875 - LRK53_RS02760 0.30 -0.1 633,875 - LRK53_RS02760 0.30 -1.0 633,875 - LRK53_RS02760 0.30 -0.9 633,875 - LRK53_RS02760 0.30 +0.4
Or see this region's nucleotide sequence