Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS02710

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS02700 and LRK53_RS02705 are separated by 87 nucleotidesLRK53_RS02705 and LRK53_RS02710 overlap by 4 nucleotidesLRK53_RS02710 and LRK53_RS02715 are separated by 103 nucleotides LRK53_RS02700: LRK53_RS02700 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 623,665 to 624,777 _RS02700 LRK53_RS02705: LRK53_RS02705 - hypothetical protein, at 624,865 to 625,317 _RS02705 LRK53_RS02710: LRK53_RS02710 - NYN domain-containing protein, at 625,314 to 625,526 _RS02710 LRK53_RS02715: LRK53_RS02715 - methyltransferase domain-containing protein, at 625,630 to 626,535 _RS02715 Position (kb) 625 626Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 624.442 kb on + strand, within LRK53_RS02700at 624.442 kb on + strand, within LRK53_RS02700at 624.442 kb on + strand, within LRK53_RS02700at 624.442 kb on + strand, within LRK53_RS02700at 624.442 kb on + strand, within LRK53_RS02700at 624.442 kb on + strand, within LRK53_RS02700at 624.442 kb on + strand, within LRK53_RS02700at 624.443 kb on - strand, within LRK53_RS02700at 624.443 kb on - strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.473 kb on + strand, within LRK53_RS02700at 624.474 kb on - strand, within LRK53_RS02700at 624.590 kb on + strand, within LRK53_RS02700at 624.591 kb on - strand, within LRK53_RS02700at 624.644 kb on - strand, within LRK53_RS02700at 624.656 kb on - strand, within LRK53_RS02700at 624.772 kb on + strandat 624.772 kb on + strandat 624.772 kb on + strandat 624.773 kb on - strandat 624.773 kb on - strandat 624.773 kb on - strandat 624.780 kb on + strandat 624.780 kb on + strandat 624.780 kb on + strandat 624.780 kb on + strandat 624.780 kb on + strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.781 kb on - strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.832 kb on + strandat 624.833 kb on - strandat 624.833 kb on - strandat 624.833 kb on - strandat 624.833 kb on - strandat 624.925 kb on + strand, within LRK53_RS02705at 624.925 kb on + strand, within LRK53_RS02705at 625.027 kb on + strand, within LRK53_RS02705at 625.027 kb on + strand, within LRK53_RS02705at 625.027 kb on + strand, within LRK53_RS02705at 625.028 kb on - strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.036 kb on + strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.037 kb on - strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.042 kb on + strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.043 kb on - strand, within LRK53_RS02705at 625.227 kb on + strand, within LRK53_RS02705at 625.227 kb on + strand, within LRK53_RS02705at 625.228 kb on - strand, within LRK53_RS02705at 625.228 kb on - strand, within LRK53_RS02705at 625.313 kb on + strandat 625.313 kb on + strandat 625.313 kb on + strandat 625.313 kb on + strandat 625.313 kb on + strandat 625.314 kb on - strandat 625.314 kb on - strandat 625.314 kb on - strandat 625.314 kb on - strandat 625.314 kb on - strandat 625.314 kb on - strandat 625.314 kb on - strandat 625.347 kb on + strand, within LRK53_RS02710at 625.347 kb on + strand, within LRK53_RS02710at 625.347 kb on + strand, within LRK53_RS02710at 625.347 kb on + strand, within LRK53_RS02710at 625.347 kb on + strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.348 kb on - strand, within LRK53_RS02710at 625.423 kb on - strand, within LRK53_RS02710at 625.487 kb on + strand, within LRK53_RS02710at 625.487 kb on + strand, within LRK53_RS02710at 625.487 kb on + strand, within LRK53_RS02710at 625.487 kb on + strand, within LRK53_RS02710at 625.487 kb on + strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.488 kb on - strand, within LRK53_RS02710at 625.533 kb on + strandat 625.534 kb on - strandat 625.534 kb on - strandat 625.560 kb on + strandat 625.560 kb on + strandat 625.560 kb on + strandat 625.561 kb on - strandat 625.561 kb on - strandat 625.561 kb on - strandat 625.616 kb on + strandat 625.616 kb on + strandat 625.616 kb on + strandat 625.617 kb on - strandat 625.617 kb on - strandat 625.930 kb on + strand, within LRK53_RS02715at 625.930 kb on + strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.931 kb on - strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.972 kb on + strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 625.973 kb on - strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.206 kb on + strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.207 kb on - strand, within LRK53_RS02715at 626.296 kb on + strand, within LRK53_RS02715at 626.296 kb on + strand, within LRK53_RS02715at 626.296 kb on + strand, within LRK53_RS02715at 626.297 kb on - strand, within LRK53_RS02715at 626.311 kb on + strand, within LRK53_RS02715at 626.312 kb on - strand, within LRK53_RS02715at 626.312 kb on - strand, within LRK53_RS02715at 626.458 kb on + strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.459 kb on - strandat 626.459 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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624,442 + LRK53_RS02700 0.70 -1.3
624,442 + LRK53_RS02700 0.70 -0.6
624,442 + LRK53_RS02700 0.70 -2.9
624,442 + LRK53_RS02700 0.70 +1.3
624,442 + LRK53_RS02700 0.70 -0.4
624,442 + LRK53_RS02700 0.70 -1.5
624,442 + LRK53_RS02700 0.70 -0.3
624,443 - LRK53_RS02700 0.70 +1.1
624,443 - LRK53_RS02700 0.70 +1.7
624,473 + LRK53_RS02700 0.73 +1.2
624,473 + LRK53_RS02700 0.73 -1.6
624,473 + LRK53_RS02700 0.73 +1.4
624,473 + LRK53_RS02700 0.73 +0.3
624,473 + LRK53_RS02700 0.73 -1.5
624,473 + LRK53_RS02700 0.73 -0.7
624,473 + LRK53_RS02700 0.73 -1.6
624,473 + LRK53_RS02700 0.73 +0.8
624,473 + LRK53_RS02700 0.73 -1.6
624,473 + LRK53_RS02700 0.73 +0.2
624,474 - LRK53_RS02700 0.73 -0.8
624,590 + LRK53_RS02700 0.83 +1.1
624,591 - LRK53_RS02700 0.83 -1.0
624,644 - LRK53_RS02700 0.88 -0.6
624,656 - LRK53_RS02700 0.89 -3.2
624,772 + +1.4
624,772 + -0.6
624,772 + -0.8
624,773 - -0.2
624,773 - -0.1
624,773 - -0.7
624,780 + -0.6
624,780 + -1.7
624,780 + -1.0
624,780 + -2.3
624,780 + +0.9
624,781 - -0.8
624,781 - -2.0
624,781 - -1.3
624,781 - -0.1
624,781 - -0.9
624,781 - +0.6
624,781 - +0.1
624,781 - -0.3
624,832 + -0.0
624,832 + -1.7
624,832 + -1.0
624,832 + +0.4
624,832 + +1.8
624,832 + -0.8
624,832 + -0.7
624,832 + -1.4
624,832 + -0.9
624,833 - -2.1
624,833 - -0.4
624,833 - +0.2
624,833 - -0.3
624,925 + LRK53_RS02705 0.13 -1.1
624,925 + LRK53_RS02705 0.13 -0.6
625,027 + LRK53_RS02705 0.36 -1.1
625,027 + LRK53_RS02705 0.36 -0.5
625,027 + LRK53_RS02705 0.36 +0.5
625,028 - LRK53_RS02705 0.36 -2.9
625,036 + LRK53_RS02705 0.38 -0.3
625,036 + LRK53_RS02705 0.38 -0.8
625,036 + LRK53_RS02705 0.38 +0.5
625,036 + LRK53_RS02705 0.38 +0.3
625,036 + LRK53_RS02705 0.38 -0.9
625,036 + LRK53_RS02705 0.38 +0.1
625,036 + LRK53_RS02705 0.38 +0.1
625,036 + LRK53_RS02705 0.38 -2.3
625,036 + LRK53_RS02705 0.38 +1.0
625,036 + LRK53_RS02705 0.38 +1.4
625,036 + LRK53_RS02705 0.38 -0.4
625,036 + LRK53_RS02705 0.38 +1.2
625,037 - LRK53_RS02705 0.38 +0.2
625,037 - LRK53_RS02705 0.38 +0.4
625,037 - LRK53_RS02705 0.38 +1.0
625,037 - LRK53_RS02705 0.38 -0.6
625,037 - LRK53_RS02705 0.38 -1.4
625,037 - LRK53_RS02705 0.38 -1.4
625,037 - LRK53_RS02705 0.38 -1.5
625,037 - LRK53_RS02705 0.38 -0.0
625,037 - LRK53_RS02705 0.38 -0.9
625,037 - LRK53_RS02705 0.38 +0.0
625,037 - LRK53_RS02705 0.38 -0.9
625,037 - LRK53_RS02705 0.38 -0.0
625,037 - LRK53_RS02705 0.38 +2.4
625,037 - LRK53_RS02705 0.38 -0.0
625,037 - LRK53_RS02705 0.38 -1.4
625,042 + LRK53_RS02705 0.39 -0.8
625,042 + LRK53_RS02705 0.39 +0.7
625,042 + LRK53_RS02705 0.39 -1.0
625,042 + LRK53_RS02705 0.39 +0.5
625,042 + LRK53_RS02705 0.39 +2.4
625,042 + LRK53_RS02705 0.39 -0.6
625,042 + LRK53_RS02705 0.39 -0.7
625,042 + LRK53_RS02705 0.39 -1.5
625,042 + LRK53_RS02705 0.39 -0.1
625,042 + LRK53_RS02705 0.39 -0.9
625,042 + LRK53_RS02705 0.39 +0.1
625,042 + LRK53_RS02705 0.39 -1.5
625,042 + LRK53_RS02705 0.39 -1.7
625,042 + LRK53_RS02705 0.39 +0.7
625,042 + LRK53_RS02705 0.39 +1.4
625,042 + LRK53_RS02705 0.39 +0.2
625,042 + LRK53_RS02705 0.39 -1.0
625,043 - LRK53_RS02705 0.39 +0.1
625,043 - LRK53_RS02705 0.39 +0.6
625,043 - LRK53_RS02705 0.39 -0.5
625,043 - LRK53_RS02705 0.39 -1.3
625,043 - LRK53_RS02705 0.39 +0.4
625,043 - LRK53_RS02705 0.39 -0.3
625,043 - LRK53_RS02705 0.39 -1.6
625,043 - LRK53_RS02705 0.39 +1.4
625,043 - LRK53_RS02705 0.39 +0.5
625,043 - LRK53_RS02705 0.39 -0.0
625,043 - LRK53_RS02705 0.39 -0.5
625,043 - LRK53_RS02705 0.39 -0.9
625,043 - LRK53_RS02705 0.39 -0.1
625,043 - LRK53_RS02705 0.39 +0.1
625,043 - LRK53_RS02705 0.39 -0.5
625,043 - LRK53_RS02705 0.39 +2.9
625,043 - LRK53_RS02705 0.39 +0.8
625,043 - LRK53_RS02705 0.39 -1.0
625,227 + LRK53_RS02705 0.80 -1.1
625,227 + LRK53_RS02705 0.80 -0.9
625,228 - LRK53_RS02705 0.80 -0.7
625,228 - LRK53_RS02705 0.80 -0.6
625,313 + -1.8
625,313 + -0.1
625,313 + -0.6
625,313 + +2.3
625,313 + -2.1
625,314 - +1.4
625,314 - +0.4
625,314 - -0.5
625,314 - +0.0
625,314 - -2.1
625,314 - -0.6
625,314 - -0.6
625,347 + LRK53_RS02710 0.15 -2.1
625,347 + LRK53_RS02710 0.15 -0.9
625,347 + LRK53_RS02710 0.15 -2.0
625,347 + LRK53_RS02710 0.15 -1.8
625,347 + LRK53_RS02710 0.15 -1.5
625,348 - LRK53_RS02710 0.16 -0.9
625,348 - LRK53_RS02710 0.16 -1.5
625,348 - LRK53_RS02710 0.16 -0.9
625,348 - LRK53_RS02710 0.16 +0.0
625,348 - LRK53_RS02710 0.16 -0.3
625,348 - LRK53_RS02710 0.16 -0.5
625,348 - LRK53_RS02710 0.16 -1.1
625,348 - LRK53_RS02710 0.16 -1.4
625,348 - LRK53_RS02710 0.16 -0.6
625,348 - LRK53_RS02710 0.16 -2.7
625,423 - LRK53_RS02710 0.51 -1.5
625,487 + LRK53_RS02710 0.81 -0.6
625,487 + LRK53_RS02710 0.81 -2.0
625,487 + LRK53_RS02710 0.81 -0.4
625,487 + LRK53_RS02710 0.81 -1.1
625,487 + LRK53_RS02710 0.81 -1.3
625,488 - LRK53_RS02710 0.82 -1.4
625,488 - LRK53_RS02710 0.82 -0.5
625,488 - LRK53_RS02710 0.82 -1.6
625,488 - LRK53_RS02710 0.82 -1.6
625,488 - LRK53_RS02710 0.82 -1.9
625,488 - LRK53_RS02710 0.82 -0.4
625,488 - LRK53_RS02710 0.82 -0.3
625,488 - LRK53_RS02710 0.82 -0.3
625,488 - LRK53_RS02710 0.82 -0.9
625,488 - LRK53_RS02710 0.82 -1.3
625,488 - LRK53_RS02710 0.82 +2.3
625,533 + -1.6
625,534 - -0.2
625,534 - -0.0
625,560 + -0.1
625,560 + -0.9
625,560 + -1.0
625,561 - +0.1
625,561 - +0.2
625,561 - -0.8
625,616 + -0.6
625,616 + -0.6
625,616 + -0.9
625,617 - -1.8
625,617 - +0.2
625,930 + LRK53_RS02715 0.33 -1.2
625,930 + LRK53_RS02715 0.33 +0.7
625,931 - LRK53_RS02715 0.33 -1.8
625,931 - LRK53_RS02715 0.33 -0.7
625,931 - LRK53_RS02715 0.33 -1.1
625,931 - LRK53_RS02715 0.33 -0.5
625,972 + LRK53_RS02715 0.38 -0.9
625,972 + LRK53_RS02715 0.38 -0.6
625,972 + LRK53_RS02715 0.38 -0.6
625,972 + LRK53_RS02715 0.38 -1.2
625,972 + LRK53_RS02715 0.38 +1.3
625,972 + LRK53_RS02715 0.38 -3.4
625,972 + LRK53_RS02715 0.38 -0.2
625,972 + LRK53_RS02715 0.38 -1.7
625,973 - LRK53_RS02715 0.38 -0.7
625,973 - LRK53_RS02715 0.38 -1.1
625,973 - LRK53_RS02715 0.38 -1.7
625,973 - LRK53_RS02715 0.38 +0.6
625,973 - LRK53_RS02715 0.38 -0.9
625,973 - LRK53_RS02715 0.38 -1.3
625,973 - LRK53_RS02715 0.38 -1.1
625,973 - LRK53_RS02715 0.38 -0.9
625,973 - LRK53_RS02715 0.38 -1.6
625,973 - LRK53_RS02715 0.38 -0.0
625,973 - LRK53_RS02715 0.38 -1.9
626,206 + LRK53_RS02715 0.64 +0.3
626,206 + LRK53_RS02715 0.64 -0.2
626,206 + LRK53_RS02715 0.64 +0.0
626,206 + LRK53_RS02715 0.64 -1.2
626,206 + LRK53_RS02715 0.64 -0.6
626,206 + LRK53_RS02715 0.64 -0.7
626,206 + LRK53_RS02715 0.64 +0.3
626,207 - LRK53_RS02715 0.64 -0.5
626,207 - LRK53_RS02715 0.64 +0.2
626,207 - LRK53_RS02715 0.64 -1.6
626,207 - LRK53_RS02715 0.64 -0.7
626,207 - LRK53_RS02715 0.64 -0.7
626,296 + LRK53_RS02715 0.74 +0.7
626,296 + LRK53_RS02715 0.74 -0.7
626,296 + LRK53_RS02715 0.74 +0.9
626,297 - LRK53_RS02715 0.74 -0.9
626,311 + LRK53_RS02715 0.75 -0.7
626,312 - LRK53_RS02715 0.75 +0.4
626,312 - LRK53_RS02715 0.75 +0.6
626,458 + -1.7
626,459 - -0.4
626,459 - -0.9
626,459 - -1.1
626,459 - -0.6
626,459 - -0.6

Or see this region's nucleotide sequence