Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00755 and LRK53_RS00760 overlap by 4 nucleotides LRK53_RS00760 and LRK53_RS00765 are separated by 29 nucleotides LRK53_RS00765 and LRK53_RS00770 are separated by 72 nucleotides LRK53_RS00770 and LRK53_RS00775 are separated by 207 nucleotides LRK53_RS00775 and LRK53_RS00780 are separated by 43 nucleotides
LRK53_RS00755: LRK53_RS00755 - efflux RND transporter periplasmic adaptor subunit, at 178,708 to 179,817
_RS00755
LRK53_RS00760: LRK53_RS00760 - DUF302 domain-containing protein, at 179,814 to 180,197
_RS00760
LRK53_RS00765: LRK53_RS00765 - DUF2892 domain-containing protein, at 180,227 to 180,433
_RS00765
LRK53_RS00770: LRK53_RS00770 - NAD(P)/FAD-dependent oxidoreductase, at 180,506 to 181,807
_RS00770
LRK53_RS00775: LRK53_RS00775 - metalloregulator ArsR/SmtB family transcription factor, at 182,015 to 182,365
_RS00775
LRK53_RS00780: LRK53_RS00780 - MBL fold metallo-hydrolase, at 182,409 to 183,275
_RS00780
Position (kb) 180
181
182 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 179.582 kb on + strand, within LRK53_RS00755 at 179.583 kb on - strand, within LRK53_RS00755 at 179.953 kb on + strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.194 kb on + strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.229 kb on - strand at 180.427 kb on + strand at 180.585 kb on + strand at 180.585 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.766 kb on + strand, within LRK53_RS00770 at 180.766 kb on + strand, within LRK53_RS00770 at 180.921 kb on + strand, within LRK53_RS00770 at 180.922 kb on - strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.230 kb on + strand, within LRK53_RS00770 at 181.231 kb on - strand, within LRK53_RS00770 at 181.231 kb on - strand, within LRK53_RS00770 at 181.231 kb on - strand, within LRK53_RS00770 at 181.231 kb on - strand, within LRK53_RS00770 at 181.231 kb on - strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.248 kb on + strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.249 kb on - strand, within LRK53_RS00770 at 181.443 kb on + strand, within LRK53_RS00770 at 181.444 kb on - strand, within LRK53_RS00770 at 181.509 kb on + strand, within LRK53_RS00770 at 181.509 kb on + strand, within LRK53_RS00770 at 181.510 kb on - strand, within LRK53_RS00770 at 181.516 kb on - strand, within LRK53_RS00770 at 181.756 kb on - strand at 181.883 kb on + strand at 181.884 kb on - strand at 181.913 kb on + strand at 181.913 kb on + strand at 181.913 kb on + strand at 181.913 kb on + strand at 181.978 kb on + strand at 181.978 kb on + strand at 181.979 kb on - strand at 182.232 kb on + strand, within LRK53_RS00775 at 182.265 kb on - strand, within LRK53_RS00775 at 182.265 kb on - strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.309 kb on + strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.310 kb on - strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.318 kb on + strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.319 kb on - strand, within LRK53_RS00775 at 182.463 kb on + strand at 182.463 kb on + strand at 182.463 kb on + strand at 182.463 kb on + strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.464 kb on - strand at 182.521 kb on - strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.652 kb on + strand, within LRK53_RS00780 at 182.653 kb on - strand, within LRK53_RS00780 at 182.653 kb on - strand, within LRK53_RS00780
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 179,582 + LRK53_RS00755 0.79 +2.0 179,583 - LRK53_RS00755 0.79 -1.3 179,953 + LRK53_RS00760 0.36 -1.1 179,954 - LRK53_RS00760 0.36 -1.1 179,954 - LRK53_RS00760 0.36 +0.8 179,954 - LRK53_RS00760 0.36 +1.0 180,190 + -0.6 180,190 + +0.1 180,190 + -1.8 180,190 + +0.0 180,190 + +0.6 180,190 + -0.2 180,190 + +0.2 180,190 + -0.6 180,190 + -1.2 180,191 - -0.8 180,191 - -0.3 180,191 - -2.7 180,191 - -0.0 180,191 - -1.5 180,191 - +0.5 180,191 - -3.0 180,191 - +0.0 180,193 + -0.5 180,193 + +1.3 180,193 + -0.3 180,193 + +0.4 180,193 + +0.0 180,193 + -1.7 180,193 + -1.6 180,193 + -0.2 180,193 + +1.7 180,193 + +0.8 180,193 + +0.8 180,193 + -0.4 180,193 + +2.8 180,193 + +0.3 180,193 + -2.1 180,193 + -1.9 180,193 + -1.6 180,193 + -1.6 180,193 + -0.2 180,193 + -0.5 180,193 + +0.4 180,193 + -1.1 180,193 + -2.0 180,193 + -0.5 180,193 + -0.5 180,193 + -1.4 180,193 + -0.5 180,193 + -1.5 180,194 + -2.2 180,194 - -0.2 180,194 - -1.5 180,194 - -3.3 180,194 - +0.4 180,194 - -2.1 180,194 - -1.1 180,194 - +0.2 180,194 - +0.6 180,194 - -0.3 180,194 - +0.5 180,194 - -0.7 180,194 - -1.0 180,194 - -0.7 180,194 - -0.5 180,194 - -1.3 180,194 - -0.4 180,194 - -0.2 180,194 - -0.8 180,194 - -0.4 180,194 - -1.0 180,194 - -0.8 180,194 - +0.7 180,194 - -1.1 180,194 - -2.4 180,194 - -0.7 180,194 - -1.7 180,229 - +0.3 180,427 + -0.9 180,585 + -0.5 180,585 + +0.1 180,627 + +0.5 180,627 + -0.4 180,627 + +1.0 180,627 + -0.9 180,627 + -1.7 180,627 + -0.0 180,627 + -1.2 180,627 + -0.8 180,627 + +0.6 180,628 - -0.5 180,628 - -0.2 180,628 - -0.5 180,628 - -0.4 180,628 - -0.5 180,766 + LRK53_RS00770 0.20 +0.5 180,766 + LRK53_RS00770 0.20 +0.6 180,921 + LRK53_RS00770 0.32 -1.4 180,922 - LRK53_RS00770 0.32 +1.6 181,230 + LRK53_RS00770 0.56 -0.5 181,230 + LRK53_RS00770 0.56 -1.8 181,230 + LRK53_RS00770 0.56 -1.0 181,230 + LRK53_RS00770 0.56 -0.1 181,230 + LRK53_RS00770 0.56 -1.0 181,230 + LRK53_RS00770 0.56 +0.8 181,230 + LRK53_RS00770 0.56 -0.5 181,230 + LRK53_RS00770 0.56 -1.9 181,231 - LRK53_RS00770 0.56 -0.4 181,231 - LRK53_RS00770 0.56 -2.8 181,231 - LRK53_RS00770 0.56 -0.3 181,231 - LRK53_RS00770 0.56 -0.4 181,231 - LRK53_RS00770 0.56 -0.2 181,248 + LRK53_RS00770 0.57 -1.3 181,248 + LRK53_RS00770 0.57 -0.7 181,248 + LRK53_RS00770 0.57 +0.3 181,248 + LRK53_RS00770 0.57 -0.8 181,248 + LRK53_RS00770 0.57 -1.0 181,248 + LRK53_RS00770 0.57 -0.6 181,248 + LRK53_RS00770 0.57 -0.7 181,248 + LRK53_RS00770 0.57 +1.2 181,248 + LRK53_RS00770 0.57 +0.6 181,248 + LRK53_RS00770 0.57 -0.8 181,248 + LRK53_RS00770 0.57 -1.2 181,248 + LRK53_RS00770 0.57 -0.5 181,248 + LRK53_RS00770 0.57 +0.5 181,248 + LRK53_RS00770 0.57 -0.7 181,248 + LRK53_RS00770 0.57 -1.0 181,248 + LRK53_RS00770 0.57 -0.6 181,248 + LRK53_RS00770 0.57 -1.5 181,248 + LRK53_RS00770 0.57 -1.2 181,248 + LRK53_RS00770 0.57 +0.7 181,248 + LRK53_RS00770 0.57 -1.3 181,248 + LRK53_RS00770 0.57 -0.1 181,248 + LRK53_RS00770 0.57 -0.4 181,248 + LRK53_RS00770 0.57 -0.2 181,248 + LRK53_RS00770 0.57 +1.3 181,248 + LRK53_RS00770 0.57 -1.5 181,249 - LRK53_RS00770 0.57 -1.2 181,249 - LRK53_RS00770 0.57 -1.4 181,249 - LRK53_RS00770 0.57 -1.0 181,249 - LRK53_RS00770 0.57 -0.2 181,249 - LRK53_RS00770 0.57 -0.5 181,249 - LRK53_RS00770 0.57 -0.6 181,249 - LRK53_RS00770 0.57 +0.6 181,249 - LRK53_RS00770 0.57 +0.4 181,249 - LRK53_RS00770 0.57 +1.3 181,249 - LRK53_RS00770 0.57 -0.3 181,249 - LRK53_RS00770 0.57 -2.3 181,249 - LRK53_RS00770 0.57 -1.1 181,249 - LRK53_RS00770 0.57 -0.5 181,249 - LRK53_RS00770 0.57 -1.0 181,249 - LRK53_RS00770 0.57 -1.0 181,249 - LRK53_RS00770 0.57 -0.4 181,249 - LRK53_RS00770 0.57 -1.6 181,249 - LRK53_RS00770 0.57 +0.2 181,249 - LRK53_RS00770 0.57 -0.8 181,249 - LRK53_RS00770 0.57 -1.4 181,249 - LRK53_RS00770 0.57 +2.1 181,249 - LRK53_RS00770 0.57 +0.2 181,443 + LRK53_RS00770 0.72 +0.0 181,444 - LRK53_RS00770 0.72 +0.5 181,509 + LRK53_RS00770 0.77 -1.1 181,509 + LRK53_RS00770 0.77 -0.7 181,510 - LRK53_RS00770 0.77 -2.2 181,516 - LRK53_RS00770 0.78 -0.7 181,756 - -0.4 181,883 + -0.1 181,884 - -1.7 181,913 + +0.3 181,913 + +0.2 181,913 + +1.8 181,913 + +1.8 181,978 + +0.3 181,978 + -1.8 181,979 - -0.8 182,232 + LRK53_RS00775 0.62 -1.1 182,265 - LRK53_RS00775 0.71 -0.2 182,265 - LRK53_RS00775 0.71 -1.0 182,309 + LRK53_RS00775 0.84 -0.3 182,309 + LRK53_RS00775 0.84 -2.3 182,309 + LRK53_RS00775 0.84 -0.8 182,309 + LRK53_RS00775 0.84 +0.3 182,309 + LRK53_RS00775 0.84 -0.5 182,309 + LRK53_RS00775 0.84 +0.4 182,309 + LRK53_RS00775 0.84 -0.5 182,309 + LRK53_RS00775 0.84 -2.1 182,310 - LRK53_RS00775 0.84 -1.4 182,310 - LRK53_RS00775 0.84 -1.4 182,310 - LRK53_RS00775 0.84 +0.6 182,310 - LRK53_RS00775 0.84 +0.7 182,310 - LRK53_RS00775 0.84 -1.5 182,310 - LRK53_RS00775 0.84 +1.6 182,310 - LRK53_RS00775 0.84 -3.3 182,310 - LRK53_RS00775 0.84 -0.2 182,310 - LRK53_RS00775 0.84 -1.8 182,310 - LRK53_RS00775 0.84 -0.9 182,310 - LRK53_RS00775 0.84 -0.8 182,310 - LRK53_RS00775 0.84 -1.1 182,310 - LRK53_RS00775 0.84 -0.6 182,310 - LRK53_RS00775 0.84 -0.1 182,318 + LRK53_RS00775 0.86 +1.0 182,318 + LRK53_RS00775 0.86 -0.4 182,318 + LRK53_RS00775 0.86 -1.2 182,318 + LRK53_RS00775 0.86 +1.0 182,318 + LRK53_RS00775 0.86 -0.2 182,318 + LRK53_RS00775 0.86 -1.3 182,318 + LRK53_RS00775 0.86 -1.1 182,318 + LRK53_RS00775 0.86 -1.2 182,318 + LRK53_RS00775 0.86 +0.0 182,318 + LRK53_RS00775 0.86 -1.2 182,318 + LRK53_RS00775 0.86 -2.8 182,318 + LRK53_RS00775 0.86 +2.6 182,318 + LRK53_RS00775 0.86 -1.1 182,318 + LRK53_RS00775 0.86 -0.7 182,318 + LRK53_RS00775 0.86 +0.8 182,318 + LRK53_RS00775 0.86 -1.1 182,318 + LRK53_RS00775 0.86 +0.1 182,318 + LRK53_RS00775 0.86 -1.1 182,319 - LRK53_RS00775 0.87 -2.7 182,319 - LRK53_RS00775 0.87 +1.0 182,319 - LRK53_RS00775 0.87 -2.7 182,319 - LRK53_RS00775 0.87 -0.4 182,319 - LRK53_RS00775 0.87 -1.2 182,319 - LRK53_RS00775 0.87 +1.7 182,319 - LRK53_RS00775 0.87 -0.7 182,319 - LRK53_RS00775 0.87 -0.5 182,319 - LRK53_RS00775 0.87 +0.0 182,319 - LRK53_RS00775 0.87 -0.7 182,319 - LRK53_RS00775 0.87 -1.6 182,319 - LRK53_RS00775 0.87 -0.2 182,319 - LRK53_RS00775 0.87 -1.4 182,463 + +0.0 182,463 + +0.3 182,463 + -0.8 182,463 + +1.5 182,464 - -2.0 182,464 - -1.5 182,464 - -1.0 182,464 - +0.4 182,464 - +0.3 182,464 - -0.9 182,521 - LRK53_RS00780 0.13 -3.5 182,652 + LRK53_RS00780 0.28 -1.7 182,652 + LRK53_RS00780 0.28 +0.6 182,652 + LRK53_RS00780 0.28 -0.7 182,652 + LRK53_RS00780 0.28 -0.3 182,652 + LRK53_RS00780 0.28 -0.8 182,652 + LRK53_RS00780 0.28 -0.6 182,652 + LRK53_RS00780 0.28 -3.5 182,652 + LRK53_RS00780 0.28 -1.0 182,652 + LRK53_RS00780 0.28 -1.3 182,652 + LRK53_RS00780 0.28 -0.0 182,653 - LRK53_RS00780 0.28 -0.7 182,653 - LRK53_RS00780 0.28 +1.2
Or see this region's nucleotide sequence