Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00750 and LRK53_RS00755 overlap by 8 nucleotides LRK53_RS00755 and LRK53_RS00760 overlap by 4 nucleotides LRK53_RS00760 and LRK53_RS00765 are separated by 29 nucleotides LRK53_RS00765 and LRK53_RS00770 are separated by 72 nucleotides
LRK53_RS00750: LRK53_RS00750 - efflux RND transporter permease subunit, at 175,473 to 178,715
_RS00750
LRK53_RS00755: LRK53_RS00755 - efflux RND transporter periplasmic adaptor subunit, at 178,708 to 179,817
_RS00755
LRK53_RS00760: LRK53_RS00760 - DUF302 domain-containing protein, at 179,814 to 180,197
_RS00760
LRK53_RS00765: LRK53_RS00765 - DUF2892 domain-containing protein, at 180,227 to 180,433
_RS00765
LRK53_RS00770: LRK53_RS00770 - NAD(P)/FAD-dependent oxidoreductase, at 180,506 to 181,807
_RS00770
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.919 kb on + strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 177.920 kb on - strand, within LRK53_RS00750 at 178.156 kb on + strand, within LRK53_RS00750 at 178.156 kb on + strand, within LRK53_RS00750 at 178.156 kb on + strand, within LRK53_RS00750 at 178.351 kb on + strand, within LRK53_RS00750 at 178.351 kb on + strand, within LRK53_RS00750 at 178.351 kb on + strand, within LRK53_RS00750 at 178.351 kb on + strand, within LRK53_RS00750 at 178.352 kb on - strand, within LRK53_RS00750 at 178.352 kb on - strand, within LRK53_RS00750 at 178.352 kb on - strand, within LRK53_RS00750 at 178.352 kb on - strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.363 kb on + strand, within LRK53_RS00750 at 178.364 kb on - strand, within LRK53_RS00750 at 178.364 kb on - strand, within LRK53_RS00750 at 178.364 kb on - strand, within LRK53_RS00750 at 178.364 kb on - strand, within LRK53_RS00750 at 178.447 kb on + strand at 178.448 kb on - strand at 178.679 kb on + strand at 178.680 kb on - strand at 178.691 kb on + strand at 178.692 kb on - strand at 178.704 kb on - strand at 178.899 kb on - strand, within LRK53_RS00755 at 179.306 kb on + strand, within LRK53_RS00755 at 179.306 kb on + strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.307 kb on - strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.414 kb on + strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.415 kb on - strand, within LRK53_RS00755 at 179.426 kb on + strand, within LRK53_RS00755 at 179.426 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.468 kb on + strand, within LRK53_RS00755 at 179.469 kb on - strand, within LRK53_RS00755 at 179.469 kb on - strand, within LRK53_RS00755 at 179.582 kb on + strand, within LRK53_RS00755 at 179.583 kb on - strand, within LRK53_RS00755 at 179.953 kb on + strand, within LRK53_RS00760 at 179.953 kb on + strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 179.954 kb on - strand, within LRK53_RS00760 at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.190 kb on + strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.191 kb on - strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.193 kb on + strand at 180.194 kb on + strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.194 kb on - strand at 180.229 kb on - strand at 180.427 kb on + strand at 180.585 kb on + strand at 180.585 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.627 kb on + strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.628 kb on - strand at 180.766 kb on + strand, within LRK53_RS00770 at 180.766 kb on + strand, within LRK53_RS00770
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 177,919 + LRK53_RS00750 0.75 -1.8 177,919 + LRK53_RS00750 0.75 -1.2 177,919 + LRK53_RS00750 0.75 -0.0 177,919 + LRK53_RS00750 0.75 +0.1 177,919 + LRK53_RS00750 0.75 -0.8 177,919 + LRK53_RS00750 0.75 -0.2 177,919 + LRK53_RS00750 0.75 -1.6 177,919 + LRK53_RS00750 0.75 -1.0 177,919 + LRK53_RS00750 0.75 -0.6 177,920 - LRK53_RS00750 0.75 +0.2 177,920 - LRK53_RS00750 0.75 +0.1 177,920 - LRK53_RS00750 0.75 +0.0 177,920 - LRK53_RS00750 0.75 -0.4 177,920 - LRK53_RS00750 0.75 -0.0 177,920 - LRK53_RS00750 0.75 -1.4 177,920 - LRK53_RS00750 0.75 +0.3 177,920 - LRK53_RS00750 0.75 -1.2 177,920 - LRK53_RS00750 0.75 +0.8 178,156 + LRK53_RS00750 0.83 -0.3 178,156 + LRK53_RS00750 0.83 -1.8 178,156 + LRK53_RS00750 0.83 -1.6 178,351 + LRK53_RS00750 0.89 -0.5 178,351 + LRK53_RS00750 0.89 -1.9 178,351 + LRK53_RS00750 0.89 +0.0 178,351 + LRK53_RS00750 0.89 +2.1 178,352 - LRK53_RS00750 0.89 -1.0 178,352 - LRK53_RS00750 0.89 -0.7 178,352 - LRK53_RS00750 0.89 -0.0 178,352 - LRK53_RS00750 0.89 -0.8 178,363 + LRK53_RS00750 0.89 -0.4 178,363 + LRK53_RS00750 0.89 +0.9 178,363 + LRK53_RS00750 0.89 -1.7 178,363 + LRK53_RS00750 0.89 -0.7 178,363 + LRK53_RS00750 0.89 -0.8 178,363 + LRK53_RS00750 0.89 -2.2 178,363 + LRK53_RS00750 0.89 -0.8 178,363 + LRK53_RS00750 0.89 -2.2 178,363 + LRK53_RS00750 0.89 -1.1 178,363 + LRK53_RS00750 0.89 -1.3 178,363 + LRK53_RS00750 0.89 -0.3 178,364 - LRK53_RS00750 0.89 -0.1 178,364 - LRK53_RS00750 0.89 -1.3 178,364 - LRK53_RS00750 0.89 -0.4 178,364 - LRK53_RS00750 0.89 +0.4 178,447 + -0.3 178,448 - -2.6 178,679 + +0.5 178,680 - -1.0 178,691 + -0.6 178,692 - -0.3 178,704 - -1.0 178,899 - LRK53_RS00755 0.17 -0.2 179,306 + LRK53_RS00755 0.54 -1.1 179,306 + LRK53_RS00755 0.54 -0.8 179,307 - LRK53_RS00755 0.54 +0.0 179,307 - LRK53_RS00755 0.54 -1.7 179,307 - LRK53_RS00755 0.54 -0.6 179,307 - LRK53_RS00755 0.54 -0.6 179,307 - LRK53_RS00755 0.54 +0.5 179,307 - LRK53_RS00755 0.54 -1.0 179,414 + LRK53_RS00755 0.64 -2.0 179,414 + LRK53_RS00755 0.64 -1.2 179,414 + LRK53_RS00755 0.64 +0.0 179,414 + LRK53_RS00755 0.64 +1.0 179,414 + LRK53_RS00755 0.64 -1.0 179,415 - LRK53_RS00755 0.64 +0.3 179,415 - LRK53_RS00755 0.64 -1.7 179,415 - LRK53_RS00755 0.64 -1.4 179,426 + LRK53_RS00755 0.65 -2.0 179,426 + LRK53_RS00755 0.65 -1.6 179,468 + LRK53_RS00755 0.68 -2.2 179,468 + LRK53_RS00755 0.68 -0.8 179,468 + LRK53_RS00755 0.68 -0.9 179,468 + LRK53_RS00755 0.68 -0.6 179,468 + LRK53_RS00755 0.68 -0.6 179,468 + LRK53_RS00755 0.68 +0.6 179,469 - LRK53_RS00755 0.69 -2.8 179,469 - LRK53_RS00755 0.69 -1.3 179,582 + LRK53_RS00755 0.79 +1.9 179,583 - LRK53_RS00755 0.79 -1.3 179,953 + LRK53_RS00760 0.36 -1.1 179,953 + LRK53_RS00760 0.36 -0.2 179,954 - LRK53_RS00760 0.36 -1.1 179,954 - LRK53_RS00760 0.36 +0.8 179,954 - LRK53_RS00760 0.36 +1.0 180,190 + -0.6 180,190 + +0.1 180,190 + -1.8 180,190 + +0.0 180,190 + +0.6 180,190 + -0.2 180,190 + +0.2 180,190 + -0.6 180,190 + -1.2 180,191 - -0.8 180,191 - -0.3 180,191 - -2.7 180,191 - -0.1 180,191 - -1.6 180,191 - +0.5 180,191 - -3.0 180,191 - +0.0 180,193 + -0.6 180,193 + +1.2 180,193 + -0.3 180,193 + +0.4 180,193 + +0.0 180,193 + -1.7 180,193 + -1.6 180,193 + -0.2 180,193 + +1.7 180,193 + +0.8 180,193 + +0.8 180,193 + -0.4 180,193 + +2.8 180,193 + -0.4 180,193 + +0.0 180,193 + +0.3 180,193 + -2.1 180,193 + -1.9 180,193 + -1.6 180,193 + -1.6 180,193 + -0.2 180,193 + -0.5 180,193 + +0.4 180,193 + -1.1 180,193 + -2.0 180,193 + -0.6 180,193 + -0.5 180,193 + -1.4 180,193 + -0.6 180,193 + -1.5 180,194 + -2.2 180,194 - -0.2 180,194 - -1.5 180,194 - -3.3 180,194 - +0.4 180,194 - -2.1 180,194 - -1.1 180,194 - +0.2 180,194 - +0.6 180,194 - -0.3 180,194 - +0.5 180,194 - -0.7 180,194 - -1.0 180,194 - -0.7 180,194 - -0.5 180,194 - -1.3 180,194 - -0.4 180,194 - -0.2 180,194 - -0.8 180,194 - -0.5 180,194 - -1.0 180,194 - -0.8 180,194 - +0.7 180,194 - -1.1 180,194 - -2.4 180,194 - -0.7 180,194 - -1.7 180,229 - +0.3 180,427 + -0.9 180,585 + -0.5 180,585 + +0.1 180,627 + +0.5 180,627 + -0.4 180,627 + +0.9 180,627 + -0.9 180,627 + -1.7 180,627 + -0.0 180,627 + -1.2 180,627 + -0.8 180,627 + +0.6 180,628 - -0.6 180,628 - -0.2 180,628 - -0.2 180,628 - -0.5 180,628 - -0.4 180,628 - -0.5 180,766 + LRK53_RS00770 0.20 +0.5 180,766 + LRK53_RS00770 0.20 +0.6
Or see this region's nucleotide sequence