Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00440

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00435 and LRK53_RS00440 overlap by 4 nucleotidesLRK53_RS00440 and LRK53_RS00445 overlap by 4 nucleotidesLRK53_RS00445 and LRK53_RS00450 are separated by 78 nucleotides LRK53_RS00435: LRK53_RS00435 - S8 family serine peptidase, at 97,456 to 98,742 _RS00435 LRK53_RS00440: LRK53_RS00440 - hypothetical protein, at 98,739 to 99,371 _RS00440 LRK53_RS00445: LRK53_RS00445 - sigma-70 family RNA polymerase sigma factor, at 99,368 to 99,952 _RS00445 LRK53_RS00450: LRK53_RS00450 - hypothetical protein, at 100,031 to 100,828 _RS00450 Position (kb) 98 99 100Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.997 kb on + strand, within LRK53_RS00435at 97.998 kb on - strand, within LRK53_RS00435at 97.998 kb on - strand, within LRK53_RS00435at 97.998 kb on - strand, within LRK53_RS00435at 98.276 kb on + strand, within LRK53_RS00435at 98.276 kb on + strand, within LRK53_RS00435at 98.276 kb on + strand, within LRK53_RS00435at 98.277 kb on - strand, within LRK53_RS00435at 98.277 kb on - strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.288 kb on + strand, within LRK53_RS00435at 98.289 kb on - strand, within LRK53_RS00435at 98.289 kb on - strand, within LRK53_RS00435at 98.318 kb on + strand, within LRK53_RS00435at 98.327 kb on + strand, within LRK53_RS00435at 98.429 kb on + strand, within LRK53_RS00435at 98.429 kb on + strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.430 kb on - strand, within LRK53_RS00435at 98.528 kb on + strand, within LRK53_RS00435at 98.528 kb on + strand, within LRK53_RS00435at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.840 kb on + strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.841 kb on - strand, within LRK53_RS00440at 98.843 kb on - strand, within LRK53_RS00440at 99.669 kb on + strand, within LRK53_RS00445at 99.670 kb on - strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.852 kb on + strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.853 kb on - strand, within LRK53_RS00445at 99.861 kb on + strand, within LRK53_RS00445at 100.203 kb on + strand, within LRK53_RS00450at 100.221 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.251 kb on + strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.252 kb on - strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.255 kb on + strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.256 kb on - strand, within LRK53_RS00450at 100.260 kb on + strand, within LRK53_RS00450at 100.260 kb on + strand, within LRK53_RS00450at 100.260 kb on + strand, within LRK53_RS00450at 100.261 kb on - strand, within LRK53_RS00450

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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97,997 + LRK53_RS00435 0.42 -1.3
97,997 + LRK53_RS00435 0.42 -2.9
97,997 + LRK53_RS00435 0.42 -2.3
97,997 + LRK53_RS00435 0.42 -1.7
97,997 + LRK53_RS00435 0.42 -1.3
97,997 + LRK53_RS00435 0.42 -2.0
97,997 + LRK53_RS00435 0.42 +0.3
97,998 - LRK53_RS00435 0.42 -0.0
97,998 - LRK53_RS00435 0.42 -1.4
97,998 - LRK53_RS00435 0.42 -0.7
98,276 + LRK53_RS00435 0.64 -0.3
98,276 + LRK53_RS00435 0.64 +1.9
98,276 + LRK53_RS00435 0.64 -2.3
98,277 - LRK53_RS00435 0.64 +1.6
98,277 - LRK53_RS00435 0.64 -0.9
98,288 + LRK53_RS00435 0.65 +0.3
98,288 + LRK53_RS00435 0.65 -0.8
98,288 + LRK53_RS00435 0.65 -0.8
98,288 + LRK53_RS00435 0.65 -0.6
98,288 + LRK53_RS00435 0.65 -0.8
98,288 + LRK53_RS00435 0.65 +0.5
98,288 + LRK53_RS00435 0.65 -0.1
98,289 - LRK53_RS00435 0.65 -1.9
98,289 - LRK53_RS00435 0.65 +2.1
98,318 + LRK53_RS00435 0.67 +0.6
98,327 + LRK53_RS00435 0.68 -0.5
98,429 + LRK53_RS00435 0.76 -0.6
98,429 + LRK53_RS00435 0.76 -0.0
98,430 - LRK53_RS00435 0.76 -0.2
98,430 - LRK53_RS00435 0.76 -1.1
98,430 - LRK53_RS00435 0.76 -2.7
98,430 - LRK53_RS00435 0.76 -0.0
98,528 + LRK53_RS00435 0.83 -1.0
98,528 + LRK53_RS00435 0.83 -1.4
98,840 + LRK53_RS00440 0.16 -0.0
98,840 + LRK53_RS00440 0.16 -0.6
98,840 + LRK53_RS00440 0.16 -1.7
98,840 + LRK53_RS00440 0.16 -0.3
98,840 + LRK53_RS00440 0.16 -3.2
98,841 - LRK53_RS00440 0.16 -0.4
98,841 - LRK53_RS00440 0.16 -0.7
98,841 - LRK53_RS00440 0.16 -2.4
98,841 - LRK53_RS00440 0.16 -2.1
98,841 - LRK53_RS00440 0.16 +0.6
98,841 - LRK53_RS00440 0.16 -1.6
98,843 - LRK53_RS00440 0.16 -0.1
99,669 + LRK53_RS00445 0.51 +1.1
99,670 - LRK53_RS00445 0.52 -0.7
99,852 + LRK53_RS00445 0.83 +0.1
99,852 + LRK53_RS00445 0.83 +0.2
99,852 + LRK53_RS00445 0.83 -0.6
99,852 + LRK53_RS00445 0.83 -0.1
99,852 + LRK53_RS00445 0.83 -0.5
99,852 + LRK53_RS00445 0.83 +1.0
99,853 - LRK53_RS00445 0.83 -2.7
99,853 - LRK53_RS00445 0.83 -0.7
99,853 - LRK53_RS00445 0.83 -0.6
99,853 - LRK53_RS00445 0.83 -0.8
99,861 + LRK53_RS00445 0.84 +0.3
100,203 + LRK53_RS00450 0.22 -0.7
100,221 + LRK53_RS00450 0.24 -0.1
100,251 + LRK53_RS00450 0.28 +1.0
100,251 + LRK53_RS00450 0.28 -0.0
100,251 + LRK53_RS00450 0.28 +0.1
100,251 + LRK53_RS00450 0.28 -0.9
100,252 - LRK53_RS00450 0.28 -0.5
100,252 - LRK53_RS00450 0.28 -0.7
100,252 - LRK53_RS00450 0.28 -0.3
100,252 - LRK53_RS00450 0.28 -1.3
100,252 - LRK53_RS00450 0.28 +0.8
100,252 - LRK53_RS00450 0.28 +1.0
100,255 + LRK53_RS00450 0.28 +0.4
100,255 + LRK53_RS00450 0.28 +1.8
100,255 + LRK53_RS00450 0.28 -1.7
100,255 + LRK53_RS00450 0.28 +0.6
100,256 - LRK53_RS00450 0.28 -0.4
100,256 - LRK53_RS00450 0.28 +0.4
100,256 - LRK53_RS00450 0.28 +1.8
100,256 - LRK53_RS00450 0.28 +0.2
100,256 - LRK53_RS00450 0.28 -0.1
100,256 - LRK53_RS00450 0.28 -2.4
100,260 + LRK53_RS00450 0.29 -0.2
100,260 + LRK53_RS00450 0.29 -2.5
100,260 + LRK53_RS00450 0.29 +0.9
100,261 - LRK53_RS00450 0.29 -0.1

Or see this region's nucleotide sequence