Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00400 and LRK53_RS00405 are separated by 1 nucleotides LRK53_RS00405 and LRK53_RS00410 are separated by 3 nucleotides LRK53_RS00410 and LRK53_RS00415 are separated by 112 nucleotides LRK53_RS00415 and LRK53_RS00420 overlap by 4 nucleotides
LRK53_RS00400: LRK53_RS00400 - amidohydrolase family protein, at 90,601 to 91,839
_RS00400
LRK53_RS00405: LRK53_RS00405 - trimeric intracellular cation channel family protein, at 91,841 to 92,536
_RS00405
LRK53_RS00410: LRK53_RS00410 - M20 family metallopeptidase, at 92,540 to 93,814
_RS00410
LRK53_RS00415: LRK53_RS00415 - DsbA family protein, at 93,927 to 94,478
_RS00415
LRK53_RS00420: LRK53_RS00420 - redoxin domain-containing protein, at 94,475 to 94,987
_RS00420
Position (kb) 92
93
94 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 91.547 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.556 kb on + strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.557 kb on - strand, within LRK53_RS00400 at 91.795 kb on + strand at 91.796 kb on - strand at 91.796 kb on - strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.825 kb on + strand at 91.826 kb on - strand at 91.826 kb on - strand at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.052 kb on + strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.053 kb on - strand, within LRK53_RS00405 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.685 kb on + strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.686 kb on - strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.811 kb on + strand, within LRK53_RS00410 at 92.812 kb on - strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.871 kb on + strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.872 kb on - strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.969 kb on + strand, within LRK53_RS00410 at 92.970 kb on - strand, within LRK53_RS00410 at 93.037 kb on + strand, within LRK53_RS00410 at 93.232 kb on - strand, within LRK53_RS00410 at 93.523 kb on - strand, within LRK53_RS00410 at 93.649 kb on - strand, within LRK53_RS00410 at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.735 kb on + strand at 93.736 kb on - strand at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.988 kb on + strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.989 kb on - strand, within LRK53_RS00415 at 93.994 kb on + strand, within LRK53_RS00415 at 93.994 kb on + strand, within LRK53_RS00415 at 94.006 kb on + strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.007 kb on - strand, within LRK53_RS00415 at 94.186 kb on + strand, within LRK53_RS00415 at 94.186 kb on + strand, within LRK53_RS00415 at 94.187 kb on - strand, within LRK53_RS00415 at 94.187 kb on - strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.261 kb on + strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.262 kb on - strand, within LRK53_RS00415 at 94.424 kb on + strand at 94.424 kb on + strand at 94.424 kb on + strand at 94.425 kb on - strand at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.593 kb on + strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.594 kb on - strand, within LRK53_RS00420 at 94.665 kb on + strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420 at 94.666 kb on - strand, within LRK53_RS00420
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 91,547 + LRK53_RS00400 0.76 -3.1 91,556 + LRK53_RS00400 0.77 -0.4 91,556 + LRK53_RS00400 0.77 -0.9 91,556 + LRK53_RS00400 0.77 -0.7 91,556 + LRK53_RS00400 0.77 -2.1 91,557 - LRK53_RS00400 0.77 +0.6 91,557 - LRK53_RS00400 0.77 -0.6 91,557 - LRK53_RS00400 0.77 -1.8 91,557 - LRK53_RS00400 0.77 +0.8 91,557 - LRK53_RS00400 0.77 -0.8 91,557 - LRK53_RS00400 0.77 -0.8 91,557 - LRK53_RS00400 0.77 -0.6 91,557 - LRK53_RS00400 0.77 -0.0 91,557 - LRK53_RS00400 0.77 +0.2 91,795 + -1.8 91,796 - -0.7 91,796 - -1.7 91,825 + -0.4 91,825 + -0.2 91,825 + +0.1 91,826 - -0.7 91,826 - -0.1 92,052 + LRK53_RS00405 0.30 -1.3 92,052 + LRK53_RS00405 0.30 -2.2 92,052 + LRK53_RS00405 0.30 +1.0 92,053 - LRK53_RS00405 0.30 -0.3 92,053 - LRK53_RS00405 0.30 +0.1 92,053 - LRK53_RS00405 0.30 -2.1 92,685 + LRK53_RS00410 0.11 -0.3 92,685 + LRK53_RS00410 0.11 -1.7 92,685 + LRK53_RS00410 0.11 -1.5 92,685 + LRK53_RS00410 0.11 -0.3 92,685 + LRK53_RS00410 0.11 -1.1 92,686 - LRK53_RS00410 0.11 -1.0 92,686 - LRK53_RS00410 0.11 -1.4 92,686 - LRK53_RS00410 0.11 -0.8 92,686 - LRK53_RS00410 0.11 -0.4 92,686 - LRK53_RS00410 0.11 -0.5 92,686 - LRK53_RS00410 0.11 -2.9 92,686 - LRK53_RS00410 0.11 -1.1 92,686 - LRK53_RS00410 0.11 +0.3 92,811 + LRK53_RS00410 0.21 +1.6 92,811 + LRK53_RS00410 0.21 -0.7 92,811 + LRK53_RS00410 0.21 -0.4 92,811 + LRK53_RS00410 0.21 -0.8 92,812 - LRK53_RS00410 0.21 -1.8 92,871 + LRK53_RS00410 0.26 -1.5 92,871 + LRK53_RS00410 0.26 -0.9 92,871 + LRK53_RS00410 0.26 -2.0 92,871 + LRK53_RS00410 0.26 -0.8 92,871 + LRK53_RS00410 0.26 -1.6 92,871 + LRK53_RS00410 0.26 -1.5 92,871 + LRK53_RS00410 0.26 -0.6 92,871 + LRK53_RS00410 0.26 -1.4 92,872 - LRK53_RS00410 0.26 +0.6 92,872 - LRK53_RS00410 0.26 +0.2 92,872 - LRK53_RS00410 0.26 -2.0 92,872 - LRK53_RS00410 0.26 -0.6 92,872 - LRK53_RS00410 0.26 +2.6 92,872 - LRK53_RS00410 0.26 +0.5 92,872 - LRK53_RS00410 0.26 -0.7 92,969 + LRK53_RS00410 0.34 -1.7 92,969 + LRK53_RS00410 0.34 -0.9 92,969 + LRK53_RS00410 0.34 -0.4 92,970 - LRK53_RS00410 0.34 -1.6 93,037 + LRK53_RS00410 0.39 -1.3 93,232 - LRK53_RS00410 0.54 -2.8 93,523 - LRK53_RS00410 0.77 +0.4 93,649 - LRK53_RS00410 0.87 -0.5 93,735 + -1.3 93,735 + +0.1 93,735 + +0.1 93,735 + -1.3 93,735 + +0.1 93,736 - -0.9 93,988 + LRK53_RS00415 0.11 -0.4 93,988 + LRK53_RS00415 0.11 -1.3 93,988 + LRK53_RS00415 0.11 -1.1 93,988 + LRK53_RS00415 0.11 -0.4 93,988 + LRK53_RS00415 0.11 -1.8 93,989 - LRK53_RS00415 0.11 -0.9 93,989 - LRK53_RS00415 0.11 -0.7 93,989 - LRK53_RS00415 0.11 +0.3 93,989 - LRK53_RS00415 0.11 -0.7 93,989 - LRK53_RS00415 0.11 -1.6 93,989 - LRK53_RS00415 0.11 +0.0 93,989 - LRK53_RS00415 0.11 +0.0 93,989 - LRK53_RS00415 0.11 -0.2 93,994 + LRK53_RS00415 0.12 -0.2 93,994 + LRK53_RS00415 0.12 +0.8 94,006 + LRK53_RS00415 0.14 -0.3 94,007 - LRK53_RS00415 0.14 -0.4 94,007 - LRK53_RS00415 0.14 -0.6 94,007 - LRK53_RS00415 0.14 -1.3 94,186 + LRK53_RS00415 0.47 +1.1 94,186 + LRK53_RS00415 0.47 +1.3 94,187 - LRK53_RS00415 0.47 -1.6 94,187 - LRK53_RS00415 0.47 -1.0 94,261 + LRK53_RS00415 0.61 -0.3 94,261 + LRK53_RS00415 0.61 -1.4 94,261 + LRK53_RS00415 0.61 -0.7 94,261 + LRK53_RS00415 0.61 -1.3 94,262 - LRK53_RS00415 0.61 -2.5 94,262 - LRK53_RS00415 0.61 -1.6 94,262 - LRK53_RS00415 0.61 -0.4 94,424 + +0.6 94,424 + -0.2 94,424 + -1.4 94,425 - -1.4 94,593 + LRK53_RS00420 0.23 +0.8 94,593 + LRK53_RS00420 0.23 +0.2 94,593 + LRK53_RS00420 0.23 -0.1 94,593 + LRK53_RS00420 0.23 -0.2 94,593 + LRK53_RS00420 0.23 -2.1 94,593 + LRK53_RS00420 0.23 +1.2 94,593 + LRK53_RS00420 0.23 -0.9 94,593 + LRK53_RS00420 0.23 +0.1 94,593 + LRK53_RS00420 0.23 +0.0 94,593 + LRK53_RS00420 0.23 -0.6 94,593 + LRK53_RS00420 0.23 -0.5 94,593 + LRK53_RS00420 0.23 -1.1 94,593 + LRK53_RS00420 0.23 -2.6 94,593 + LRK53_RS00420 0.23 +0.2 94,593 + LRK53_RS00420 0.23 -1.4 94,594 - LRK53_RS00420 0.23 +1.2 94,594 - LRK53_RS00420 0.23 +1.3 94,594 - LRK53_RS00420 0.23 -0.1 94,594 - LRK53_RS00420 0.23 +1.9 94,594 - LRK53_RS00420 0.23 -0.2 94,594 - LRK53_RS00420 0.23 -1.0 94,594 - LRK53_RS00420 0.23 -0.1 94,594 - LRK53_RS00420 0.23 +0.1 94,594 - LRK53_RS00420 0.23 -0.7 94,594 - LRK53_RS00420 0.23 -0.6 94,665 + LRK53_RS00420 0.37 -0.2 94,666 - LRK53_RS00420 0.37 -0.4 94,666 - LRK53_RS00420 0.37 +0.3
Or see this region's nucleotide sequence