Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00370

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00365 and LRK53_RS00370 are separated by 61 nucleotidesLRK53_RS00370 and LRK53_RS00375 are separated by 35 nucleotidesLRK53_RS00375 and LRK53_RS00380 are separated by 48 nucleotides LRK53_RS00365: LRK53_RS00365 - hypothetical protein, at 83,336 to 84,967 _RS00365 LRK53_RS00370: LRK53_RS00370 - DNA starvation/stationary phase protection protein, at 85,029 to 85,574 _RS00370 LRK53_RS00375: LRK53_RS00375 - NAD(P)-dependent oxidoreductase, at 85,610 to 86,221 _RS00375 LRK53_RS00380: LRK53_RS00380 - DUF308 domain-containing protein, at 86,270 to 86,812 _RS00380 Position (kb) 85 86Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 84.063 kb on + strand, within LRK53_RS00365at 84.064 kb on - strand, within LRK53_RS00365at 84.255 kb on + strand, within LRK53_RS00365at 84.255 kb on + strand, within LRK53_RS00365at 84.255 kb on + strand, within LRK53_RS00365at 84.255 kb on + strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.256 kb on - strand, within LRK53_RS00365at 84.270 kb on + strand, within LRK53_RS00365at 84.271 kb on - strand, within LRK53_RS00365at 84.355 kb on + strand, within LRK53_RS00365at 84.355 kb on + strand, within LRK53_RS00365at 84.355 kb on + strand, within LRK53_RS00365at 84.356 kb on - strand, within LRK53_RS00365at 84.356 kb on - strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.357 kb on + strand, within LRK53_RS00365at 84.358 kb on - strand, within LRK53_RS00365at 84.358 kb on - strand, within LRK53_RS00365at 84.358 kb on - strand, within LRK53_RS00365at 84.558 kb on + strand, within LRK53_RS00365at 84.558 kb on + strand, within LRK53_RS00365at 84.558 kb on + strand, within LRK53_RS00365at 84.558 kb on + strand, within LRK53_RS00365at 84.558 kb on + strand, within LRK53_RS00365at 84.559 kb on - strand, within LRK53_RS00365at 84.559 kb on - strand, within LRK53_RS00365at 84.565 kb on + strand, within LRK53_RS00365at 84.566 kb on - strand, within LRK53_RS00365at 84.566 kb on - strand, within LRK53_RS00365at 84.594 kb on + strand, within LRK53_RS00365at 84.594 kb on + strand, within LRK53_RS00365at 84.594 kb on + strand, within LRK53_RS00365at 84.594 kb on + strand, within LRK53_RS00365at 84.595 kb on - strand, within LRK53_RS00365at 84.595 kb on - strand, within LRK53_RS00365at 84.595 kb on - strand, within LRK53_RS00365at 84.595 kb on - strand, within LRK53_RS00365at 84.595 kb on - strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.753 kb on + strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.754 kb on - strand, within LRK53_RS00365at 84.801 kb on + strand, within LRK53_RS00365at 84.801 kb on + strand, within LRK53_RS00365at 84.801 kb on + strand, within LRK53_RS00365at 84.801 kb on + strand, within LRK53_RS00365at 84.801 kb on + strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.802 kb on - strand, within LRK53_RS00365at 84.810 kb on + strandat 85.017 kb on + strandat 85.231 kb on + strand, within LRK53_RS00370at 85.231 kb on + strand, within LRK53_RS00370at 85.232 kb on - strand, within LRK53_RS00370at 85.232 kb on - strand, within LRK53_RS00370at 85.378 kb on + strand, within LRK53_RS00370at 85.378 kb on + strand, within LRK53_RS00370at 85.378 kb on + strand, within LRK53_RS00370at 85.379 kb on - strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.432 kb on + strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.433 kb on - strand, within LRK53_RS00370at 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.533 kb on + strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.534 kb on - strandat 85.614 kb on + strandat 85.615 kb on - strandat 85.681 kb on - strand, within LRK53_RS00375at 85.681 kb on - strand, within LRK53_RS00375at 85.940 kb on + strand, within LRK53_RS00375at 85.941 kb on - strand, within LRK53_RS00375at 85.941 kb on - strand, within LRK53_RS00375at 85.941 kb on - strand, within LRK53_RS00375at 86.283 kb on + strandat 86.283 kb on + strandat 86.283 kb on + strandat 86.283 kb on + strandat 86.284 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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84,063 + LRK53_RS00365 0.45 +1.5
84,064 - LRK53_RS00365 0.45 -2.0
84,255 + LRK53_RS00365 0.56 -0.8
84,255 + LRK53_RS00365 0.56 -1.4
84,255 + LRK53_RS00365 0.56 -0.4
84,255 + LRK53_RS00365 0.56 -0.6
84,256 - LRK53_RS00365 0.56 -3.1
84,256 - LRK53_RS00365 0.56 +0.0
84,256 - LRK53_RS00365 0.56 +0.3
84,256 - LRK53_RS00365 0.56 -0.3
84,256 - LRK53_RS00365 0.56 +2.2
84,256 - LRK53_RS00365 0.56 -0.2
84,256 - LRK53_RS00365 0.56 -1.2
84,256 - LRK53_RS00365 0.56 -0.5
84,256 - LRK53_RS00365 0.56 -1.7
84,270 + LRK53_RS00365 0.57 +1.0
84,271 - LRK53_RS00365 0.57 +0.4
84,355 + LRK53_RS00365 0.62 +0.5
84,355 + LRK53_RS00365 0.62 -1.1
84,355 + LRK53_RS00365 0.62 -2.6
84,356 - LRK53_RS00365 0.62 -0.6
84,356 - LRK53_RS00365 0.62 -1.9
84,357 + LRK53_RS00365 0.63 +1.0
84,357 + LRK53_RS00365 0.63 +1.6
84,357 + LRK53_RS00365 0.63 +0.5
84,357 + LRK53_RS00365 0.63 +0.6
84,357 + LRK53_RS00365 0.63 -0.3
84,357 + LRK53_RS00365 0.63 -0.3
84,357 + LRK53_RS00365 0.63 -1.0
84,357 + LRK53_RS00365 0.63 -0.2
84,358 - LRK53_RS00365 0.63 +0.1
84,358 - LRK53_RS00365 0.63 -1.6
84,358 - LRK53_RS00365 0.63 +1.3
84,558 + LRK53_RS00365 0.75 +0.3
84,558 + LRK53_RS00365 0.75 -0.7
84,558 + LRK53_RS00365 0.75 -1.1
84,558 + LRK53_RS00365 0.75 -0.7
84,558 + LRK53_RS00365 0.75 -1.3
84,559 - LRK53_RS00365 0.75 +2.3
84,559 - LRK53_RS00365 0.75 +0.6
84,565 + LRK53_RS00365 0.75 -0.4
84,566 - LRK53_RS00365 0.75 +0.0
84,566 - LRK53_RS00365 0.75 -0.0
84,594 + LRK53_RS00365 0.77 +0.8
84,594 + LRK53_RS00365 0.77 -1.1
84,594 + LRK53_RS00365 0.77 -0.9
84,594 + LRK53_RS00365 0.77 -1.3
84,595 - LRK53_RS00365 0.77 -0.5
84,595 - LRK53_RS00365 0.77 -2.5
84,595 - LRK53_RS00365 0.77 -1.4
84,595 - LRK53_RS00365 0.77 +1.5
84,595 - LRK53_RS00365 0.77 -1.8
84,753 + LRK53_RS00365 0.87 -0.5
84,753 + LRK53_RS00365 0.87 -2.0
84,753 + LRK53_RS00365 0.87 -1.0
84,753 + LRK53_RS00365 0.87 -0.5
84,753 + LRK53_RS00365 0.87 -1.1
84,753 + LRK53_RS00365 0.87 -0.2
84,753 + LRK53_RS00365 0.87 +0.5
84,753 + LRK53_RS00365 0.87 -2.4
84,753 + LRK53_RS00365 0.87 +2.3
84,753 + LRK53_RS00365 0.87 +0.8
84,753 + LRK53_RS00365 0.87 -0.4
84,753 + LRK53_RS00365 0.87 +1.8
84,753 + LRK53_RS00365 0.87 -1.3
84,753 + LRK53_RS00365 0.87 -0.7
84,754 - LRK53_RS00365 0.87 +0.5
84,754 - LRK53_RS00365 0.87 +0.0
84,754 - LRK53_RS00365 0.87 -0.7
84,754 - LRK53_RS00365 0.87 +0.6
84,754 - LRK53_RS00365 0.87 -1.5
84,754 - LRK53_RS00365 0.87 -0.7
84,754 - LRK53_RS00365 0.87 -2.0
84,801 + LRK53_RS00365 0.90 +0.3
84,801 + LRK53_RS00365 0.90 +2.5
84,801 + LRK53_RS00365 0.90 -0.4
84,801 + LRK53_RS00365 0.90 -0.7
84,801 + LRK53_RS00365 0.90 +1.2
84,802 - LRK53_RS00365 0.90 -0.8
84,802 - LRK53_RS00365 0.90 +0.0
84,802 - LRK53_RS00365 0.90 -0.5
84,802 - LRK53_RS00365 0.90 -1.0
84,802 - LRK53_RS00365 0.90 +0.1
84,802 - LRK53_RS00365 0.90 +0.0
84,802 - LRK53_RS00365 0.90 +1.3
84,810 + -0.8
85,017 + +0.7
85,231 + LRK53_RS00370 0.37 -0.9
85,231 + LRK53_RS00370 0.37 +0.3
85,232 - LRK53_RS00370 0.37 -0.2
85,232 - LRK53_RS00370 0.37 -1.3
85,378 + LRK53_RS00370 0.64 +2.1
85,378 + LRK53_RS00370 0.64 -0.7
85,378 + LRK53_RS00370 0.64 +0.3
85,379 - LRK53_RS00370 0.64 +1.1
85,432 + LRK53_RS00370 0.74 -0.2
85,432 + LRK53_RS00370 0.74 -0.5
85,432 + LRK53_RS00370 0.74 +0.5
85,432 + LRK53_RS00370 0.74 +0.3
85,432 + LRK53_RS00370 0.74 +0.5
85,433 - LRK53_RS00370 0.74 -1.9
85,433 - LRK53_RS00370 0.74 -1.9
85,433 - LRK53_RS00370 0.74 +1.5
85,433 - LRK53_RS00370 0.74 -1.3
85,433 - LRK53_RS00370 0.74 -0.3
85,533 + -1.4
85,533 + +1.5
85,533 + -0.5
85,533 + -1.2
85,533 + +0.5
85,533 + -0.7
85,533 + -2.5
85,533 + -0.7
85,533 + +0.3
85,533 + -2.1
85,533 + -0.6
85,533 + +1.4
85,534 - -0.2
85,534 - +0.1
85,534 - -0.2
85,534 - -0.5
85,534 - +2.3
85,534 - -1.7
85,534 - +0.7
85,534 - -0.6
85,534 - +0.8
85,534 - +0.3
85,534 - -0.1
85,534 - -0.5
85,534 - +1.8
85,534 - +1.4
85,614 + -0.7
85,615 - -0.6
85,681 - LRK53_RS00375 0.12 +0.3
85,681 - LRK53_RS00375 0.12 -0.1
85,940 + LRK53_RS00375 0.54 +0.3
85,941 - LRK53_RS00375 0.54 -0.1
85,941 - LRK53_RS00375 0.54 +0.5
85,941 - LRK53_RS00375 0.54 -1.3
86,283 + +0.6
86,283 + -1.4
86,283 + -0.5
86,283 + +0.8
86,284 - -0.0

Or see this region's nucleotide sequence