Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00340 and LRK53_RS00345 are separated by 14 nucleotides LRK53_RS00345 and LRK53_RS00350 are separated by 488 nucleotides LRK53_RS00350 and LRK53_RS00355 are separated by 59 nucleotides
LRK53_RS00340: LRK53_RS00340 - GMC family oxidoreductase, at 78,382 to 80,025
_RS00340
LRK53_RS00345: LRK53_RS00345 - sorbitol dehydrogenase family protein, at 80,040 to 80,567
_RS00345
LRK53_RS00350: LRK53_RS00350 - DoxX family protein, at 81,056 to 81,415
_RS00350
LRK53_RS00355: LRK53_RS00355 - cation diffusion facilitator family transporter, at 81,475 to 82,377
_RS00355
Position (kb) 80
81 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.064 kb on + strand, within LRK53_RS00340 at 79.064 kb on + strand, within LRK53_RS00340 at 79.065 kb on - strand, within LRK53_RS00340 at 79.065 kb on - strand, within LRK53_RS00340 at 79.143 kb on - strand, within LRK53_RS00340 at 79.247 kb on + strand, within LRK53_RS00340 at 79.250 kb on + strand, within LRK53_RS00340 at 79.251 kb on - strand, within LRK53_RS00340 at 79.251 kb on - strand, within LRK53_RS00340 at 79.251 kb on - strand, within LRK53_RS00340 at 79.251 kb on - strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.364 kb on + strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.365 kb on - strand, within LRK53_RS00340 at 79.472 kb on + strand, within LRK53_RS00340 at 79.473 kb on - strand, within LRK53_RS00340 at 79.473 kb on - strand, within LRK53_RS00340 at 79.628 kb on + strand, within LRK53_RS00340 at 79.628 kb on + strand, within LRK53_RS00340 at 79.658 kb on + strand, within LRK53_RS00340 at 79.658 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.745 kb on + strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.746 kb on - strand, within LRK53_RS00340 at 79.757 kb on + strand, within LRK53_RS00340 at 79.784 kb on + strand, within LRK53_RS00340 at 79.784 kb on + strand, within LRK53_RS00340 at 79.785 kb on - strand, within LRK53_RS00340 at 79.805 kb on + strand, within LRK53_RS00340 at 79.805 kb on + strand, within LRK53_RS00340 at 79.805 kb on + strand, within LRK53_RS00340 at 79.805 kb on + strand, within LRK53_RS00340 at 79.805 kb on + strand, within LRK53_RS00340 at 79.806 kb on - strand, within LRK53_RS00340 at 79.806 kb on - strand, within LRK53_RS00340 at 79.806 kb on - strand, within LRK53_RS00340 at 79.806 kb on - strand, within LRK53_RS00340 at 80.069 kb on - strand at 80.069 kb on - strand at 80.078 kb on - strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.083 kb on + strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.084 kb on - strand at 80.344 kb on + strand, within LRK53_RS00345 at 80.344 kb on + strand, within LRK53_RS00345 at 80.344 kb on + strand, within LRK53_RS00345 at 80.344 kb on + strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.345 kb on - strand, within LRK53_RS00345 at 80.473 kb on + strand, within LRK53_RS00345 at 80.473 kb on + strand, within LRK53_RS00345 at 80.473 kb on + strand, within LRK53_RS00345 at 80.474 kb on - strand, within LRK53_RS00345 at 80.621 kb on + strand at 80.621 kb on + strand at 80.621 kb on + strand at 80.622 kb on - strand at 80.622 kb on - strand at 80.676 kb on + strand at 80.676 kb on + strand at 80.676 kb on + strand at 80.677 kb on - strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.701 kb on + strand at 80.702 kb on - strand at 80.763 kb on + strand at 80.763 kb on + strand at 80.763 kb on + strand at 80.764 kb on - strand at 80.764 kb on - strand at 80.764 kb on - strand at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.101 kb on + strand, within LRK53_RS00350 at 81.102 kb on - strand, within LRK53_RS00350 at 81.102 kb on - strand, within LRK53_RS00350 at 81.119 kb on + strand, within LRK53_RS00350 at 81.119 kb on + strand, within LRK53_RS00350 at 81.119 kb on + strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.120 kb on - strand, within LRK53_RS00350 at 81.255 kb on + strand, within LRK53_RS00350 at 81.255 kb on + strand, within LRK53_RS00350 at 81.256 kb on - strand, within LRK53_RS00350 at 81.256 kb on - strand, within LRK53_RS00350 at 81.277 kb on + strand, within LRK53_RS00350 at 81.277 kb on + strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350 at 81.278 kb on - strand, within LRK53_RS00350
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 79,064 + LRK53_RS00340 0.41 +0.2 79,064 + LRK53_RS00340 0.41 -0.2 79,065 - LRK53_RS00340 0.42 -2.6 79,065 - LRK53_RS00340 0.42 -1.1 79,143 - LRK53_RS00340 0.46 +0.8 79,247 + LRK53_RS00340 0.53 -0.6 79,250 + LRK53_RS00340 0.53 -0.8 79,251 - LRK53_RS00340 0.53 -0.2 79,251 - LRK53_RS00340 0.53 -0.4 79,251 - LRK53_RS00340 0.53 -0.4 79,251 - LRK53_RS00340 0.53 -0.4 79,364 + LRK53_RS00340 0.60 -0.2 79,364 + LRK53_RS00340 0.60 +0.6 79,364 + LRK53_RS00340 0.60 +0.1 79,364 + LRK53_RS00340 0.60 -0.8 79,364 + LRK53_RS00340 0.60 -1.0 79,364 + LRK53_RS00340 0.60 -0.9 79,364 + LRK53_RS00340 0.60 -0.9 79,365 - LRK53_RS00340 0.60 -0.3 79,365 - LRK53_RS00340 0.60 +1.0 79,365 - LRK53_RS00340 0.60 -0.2 79,365 - LRK53_RS00340 0.60 -0.4 79,365 - LRK53_RS00340 0.60 -1.2 79,365 - LRK53_RS00340 0.60 -1.7 79,365 - LRK53_RS00340 0.60 +0.6 79,365 - LRK53_RS00340 0.60 +0.4 79,365 - LRK53_RS00340 0.60 -1.2 79,365 - LRK53_RS00340 0.60 -0.0 79,365 - LRK53_RS00340 0.60 -0.9 79,365 - LRK53_RS00340 0.60 -0.9 79,472 + LRK53_RS00340 0.66 +1.3 79,473 - LRK53_RS00340 0.66 -1.2 79,473 - LRK53_RS00340 0.66 -0.2 79,628 + LRK53_RS00340 0.76 -0.8 79,628 + LRK53_RS00340 0.76 -1.6 79,658 + LRK53_RS00340 0.78 +0.5 79,658 + LRK53_RS00340 0.78 -0.2 79,745 + LRK53_RS00340 0.83 -1.0 79,745 + LRK53_RS00340 0.83 +0.2 79,745 + LRK53_RS00340 0.83 -2.1 79,745 + LRK53_RS00340 0.83 -1.0 79,745 + LRK53_RS00340 0.83 +1.0 79,745 + LRK53_RS00340 0.83 -0.6 79,745 + LRK53_RS00340 0.83 -0.2 79,745 + LRK53_RS00340 0.83 -0.8 79,746 - LRK53_RS00340 0.83 -0.8 79,746 - LRK53_RS00340 0.83 -0.2 79,746 - LRK53_RS00340 0.83 -0.5 79,746 - LRK53_RS00340 0.83 -1.4 79,746 - LRK53_RS00340 0.83 -0.1 79,746 - LRK53_RS00340 0.83 -0.3 79,746 - LRK53_RS00340 0.83 -1.0 79,746 - LRK53_RS00340 0.83 -0.3 79,746 - LRK53_RS00340 0.83 -1.6 79,757 + LRK53_RS00340 0.84 -1.0 79,784 + LRK53_RS00340 0.85 -3.1 79,784 + LRK53_RS00340 0.85 -2.1 79,785 - LRK53_RS00340 0.85 -1.2 79,805 + LRK53_RS00340 0.87 -1.3 79,805 + LRK53_RS00340 0.87 -0.2 79,805 + LRK53_RS00340 0.87 -0.6 79,805 + LRK53_RS00340 0.87 +1.0 79,805 + LRK53_RS00340 0.87 +0.9 79,806 - LRK53_RS00340 0.87 -1.3 79,806 - LRK53_RS00340 0.87 -1.6 79,806 - LRK53_RS00340 0.87 -1.3 79,806 - LRK53_RS00340 0.87 +0.4 80,069 - -0.0 80,069 - -1.4 80,078 - -0.7 80,083 + +0.0 80,083 + -0.4 80,083 + -0.4 80,083 + +0.9 80,083 + -0.5 80,083 + -0.8 80,083 + -1.8 80,083 + -1.0 80,083 + -0.3 80,084 - -0.1 80,084 - +0.5 80,084 - -0.4 80,084 - -0.9 80,084 - -0.1 80,084 - -2.0 80,084 - -1.4 80,084 - +0.0 80,084 - +0.1 80,084 - -0.3 80,084 - +0.7 80,084 - -0.2 80,344 + LRK53_RS00345 0.58 +0.6 80,344 + LRK53_RS00345 0.58 -0.8 80,344 + LRK53_RS00345 0.58 -0.5 80,344 + LRK53_RS00345 0.58 +0.7 80,345 - LRK53_RS00345 0.58 -1.4 80,345 - LRK53_RS00345 0.58 -0.4 80,345 - LRK53_RS00345 0.58 -0.8 80,345 - LRK53_RS00345 0.58 +0.4 80,473 + LRK53_RS00345 0.82 +1.8 80,473 + LRK53_RS00345 0.82 -1.4 80,473 + LRK53_RS00345 0.82 +1.2 80,474 - LRK53_RS00345 0.82 +1.3 80,621 + -1.1 80,621 + +0.9 80,621 + -2.4 80,622 - +0.9 80,622 - +1.6 80,676 + +1.0 80,676 + -0.6 80,676 + -0.8 80,677 - -0.5 80,701 + -1.0 80,701 + -0.9 80,701 + +0.0 80,701 + -0.8 80,702 - -0.3 80,763 + +0.2 80,763 + -0.4 80,763 + -1.0 80,764 - +0.0 80,764 - -2.8 80,764 - +2.6 81,101 + LRK53_RS00350 0.12 -0.1 81,101 + LRK53_RS00350 0.12 -0.8 81,101 + LRK53_RS00350 0.12 -1.4 81,101 + LRK53_RS00350 0.12 +1.4 81,101 + LRK53_RS00350 0.12 -0.6 81,102 - LRK53_RS00350 0.13 +1.2 81,102 - LRK53_RS00350 0.13 -0.2 81,119 + LRK53_RS00350 0.17 +0.8 81,119 + LRK53_RS00350 0.17 +0.2 81,119 + LRK53_RS00350 0.17 -0.6 81,120 - LRK53_RS00350 0.18 +0.1 81,120 - LRK53_RS00350 0.18 -0.2 81,120 - LRK53_RS00350 0.18 +1.5 81,120 - LRK53_RS00350 0.18 -2.2 81,120 - LRK53_RS00350 0.18 -1.6 81,255 + LRK53_RS00350 0.55 +0.3 81,255 + LRK53_RS00350 0.55 -3.3 81,256 - LRK53_RS00350 0.56 +0.3 81,256 - LRK53_RS00350 0.56 +1.6 81,277 + LRK53_RS00350 0.61 -0.4 81,277 + LRK53_RS00350 0.61 -0.0 81,278 - LRK53_RS00350 0.62 -2.3 81,278 - LRK53_RS00350 0.62 -0.8 81,278 - LRK53_RS00350 0.62 +1.0 81,278 - LRK53_RS00350 0.62 +0.2
Or see this region's nucleotide sequence