Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00110

Experiment: Planktonic; Day2; SGW; pH7

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00100 and LRK53_RS00105 are separated by 33 nucleotidesLRK53_RS00105 and LRK53_RS00110 are separated by 145 nucleotidesLRK53_RS00110 and LRK53_RS00115 are separated by 40 nucleotides LRK53_RS00100: LRK53_RS00100 - IS110 family transposase, at 30,580 to 31,491 _RS00100 LRK53_RS00105: LRK53_RS00105 - hypothetical protein, at 31,525 to 31,764 _RS00105 LRK53_RS00110: LRK53_RS00110 - PA0069 family radical SAM protein, at 31,910 to 33,016 _RS00110 LRK53_RS00115: LRK53_RS00115 - hypothetical protein, at 33,057 to 34,532 _RS00115 Position (kb) 31 32 33 34Strain fitness (log2 ratio) -3 -2 -1 0 1at 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.501 kb on + strandat 31.587 kb on - strand, within LRK53_RS00105at 31.736 kb on - strand, within LRK53_RS00105at 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.769 kb on + strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.770 kb on - strandat 31.819 kb on + strandat 31.820 kb on - strandat 31.820 kb on - strandat 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.183 kb on + strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.184 kb on - strand, within LRK53_RS00110at 32.210 kb on + strand, within LRK53_RS00110at 32.210 kb on + strand, within LRK53_RS00110at 32.211 kb on - strand, within LRK53_RS00110at 32.307 kb on - strand, within LRK53_RS00110at 32.348 kb on + strand, within LRK53_RS00110at 32.348 kb on + strand, within LRK53_RS00110at 32.349 kb on - strand, within LRK53_RS00110at 32.840 kb on + strand, within LRK53_RS00110at 32.841 kb on - strand, within LRK53_RS00110at 32.841 kb on - strand, within LRK53_RS00110at 33.280 kb on - strand, within LRK53_RS00115at 33.465 kb on + strand, within LRK53_RS00115at 33.465 kb on + strand, within LRK53_RS00115at 33.466 kb on - strand, within LRK53_RS00115at 33.673 kb on + strand, within LRK53_RS00115at 33.743 kb on - strand, within LRK53_RS00115at 33.743 kb on - strand, within LRK53_RS00115at 33.743 kb on - strand, within LRK53_RS00115at 33.743 kb on - strand, within LRK53_RS00115at 33.766 kb on + strand, within LRK53_RS00115at 33.766 kb on + strand, within LRK53_RS00115at 33.766 kb on + strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.767 kb on - strand, within LRK53_RS00115at 33.895 kb on + strand, within LRK53_RS00115at 33.895 kb on + strand, within LRK53_RS00115at 33.916 kb on + strand, within LRK53_RS00115at 33.965 kb on + strand, within LRK53_RS00115at 33.965 kb on + strand, within LRK53_RS00115at 33.966 kb on - strand, within LRK53_RS00115at 33.966 kb on - strand, within LRK53_RS00115at 33.966 kb on - strand, within LRK53_RS00115

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Per-strain Table

Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7
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31,501 + -0.8
31,501 + -0.6
31,501 + -0.6
31,501 + -0.4
31,501 + +0.1
31,501 + -0.7
31,501 + -1.7
31,501 + -1.1
31,501 + -1.3
31,501 + -0.7
31,501 + -1.0
31,501 + -0.6
31,501 + -0.5
31,501 + -0.0
31,501 + +0.5
31,501 + -0.1
31,501 + -0.6
31,501 + +0.9
31,587 - LRK53_RS00105 0.26 +0.1
31,736 - LRK53_RS00105 0.88 -0.0
31,769 + +0.0
31,769 + -1.0
31,769 + +0.6
31,769 + +1.0
31,769 + +0.9
31,770 - -0.8
31,770 - +0.0
31,770 - -1.0
31,770 - -0.2
31,770 - +0.7
31,770 - -0.2
31,770 - -2.8
31,819 + -0.4
31,820 - +0.8
31,820 - -0.2
32,183 + LRK53_RS00110 0.25 -0.9
32,183 + LRK53_RS00110 0.25 -1.8
32,183 + LRK53_RS00110 0.25 +0.2
32,183 + LRK53_RS00110 0.25 -0.5
32,183 + LRK53_RS00110 0.25 -0.3
32,183 + LRK53_RS00110 0.25 -1.4
32,184 - LRK53_RS00110 0.25 +1.2
32,184 - LRK53_RS00110 0.25 +0.5
32,184 - LRK53_RS00110 0.25 -1.8
32,184 - LRK53_RS00110 0.25 -1.4
32,184 - LRK53_RS00110 0.25 -0.6
32,184 - LRK53_RS00110 0.25 -0.8
32,210 + LRK53_RS00110 0.27 -1.5
32,210 + LRK53_RS00110 0.27 +0.6
32,211 - LRK53_RS00110 0.27 -0.6
32,307 - LRK53_RS00110 0.36 -0.6
32,348 + LRK53_RS00110 0.40 +0.6
32,348 + LRK53_RS00110 0.40 -0.7
32,349 - LRK53_RS00110 0.40 -0.7
32,840 + LRK53_RS00110 0.84 -2.2
32,841 - LRK53_RS00110 0.84 +1.5
32,841 - LRK53_RS00110 0.84 -0.8
33,280 - LRK53_RS00115 0.15 -1.4
33,465 + LRK53_RS00115 0.28 +0.9
33,465 + LRK53_RS00115 0.28 -0.6
33,466 - LRK53_RS00115 0.28 -0.6
33,673 + LRK53_RS00115 0.42 -0.2
33,743 - LRK53_RS00115 0.46 +0.7
33,743 - LRK53_RS00115 0.46 -0.5
33,743 - LRK53_RS00115 0.46 +0.1
33,743 - LRK53_RS00115 0.46 -1.7
33,766 + LRK53_RS00115 0.48 -0.1
33,766 + LRK53_RS00115 0.48 +1.2
33,766 + LRK53_RS00115 0.48 -0.7
33,767 - LRK53_RS00115 0.48 -0.2
33,767 - LRK53_RS00115 0.48 -0.1
33,767 - LRK53_RS00115 0.48 +1.0
33,767 - LRK53_RS00115 0.48 -1.0
33,767 - LRK53_RS00115 0.48 -0.1
33,767 - LRK53_RS00115 0.48 +1.6
33,767 - LRK53_RS00115 0.48 -1.1
33,895 + LRK53_RS00115 0.57 +0.2
33,895 + LRK53_RS00115 0.57 -1.9
33,916 + LRK53_RS00115 0.58 -0.4
33,965 + LRK53_RS00115 0.62 -1.1
33,965 + LRK53_RS00115 0.62 +0.0
33,966 - LRK53_RS00115 0.62 +0.2
33,966 - LRK53_RS00115 0.62 -1.3
33,966 - LRK53_RS00115 0.62 -2.6

Or see this region's nucleotide sequence