Experiment: Planktonic; Day2; SGW; pH7
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00100 and LRK53_RS00105 are separated by 33 nucleotides LRK53_RS00105 and LRK53_RS00110 are separated by 145 nucleotides LRK53_RS00110 and LRK53_RS00115 are separated by 40 nucleotides
LRK53_RS00100: LRK53_RS00100 - IS110 family transposase, at 30,580 to 31,491
_RS00100
LRK53_RS00105: LRK53_RS00105 - hypothetical protein, at 31,525 to 31,764
_RS00105
LRK53_RS00110: LRK53_RS00110 - PA0069 family radical SAM protein, at 31,910 to 33,016
_RS00110
LRK53_RS00115: LRK53_RS00115 - hypothetical protein, at 33,057 to 34,532
_RS00115
Position (kb)
31
32
33
34 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.501 kb on + strand at 31.587 kb on - strand, within LRK53_RS00105 at 31.736 kb on - strand, within LRK53_RS00105 at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.769 kb on + strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.770 kb on - strand at 31.819 kb on + strand at 31.820 kb on - strand at 31.820 kb on - strand at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.183 kb on + strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.184 kb on - strand, within LRK53_RS00110 at 32.210 kb on + strand, within LRK53_RS00110 at 32.210 kb on + strand, within LRK53_RS00110 at 32.211 kb on - strand, within LRK53_RS00110 at 32.307 kb on - strand, within LRK53_RS00110 at 32.348 kb on + strand, within LRK53_RS00110 at 32.348 kb on + strand, within LRK53_RS00110 at 32.349 kb on - strand, within LRK53_RS00110 at 32.840 kb on + strand, within LRK53_RS00110 at 32.841 kb on - strand, within LRK53_RS00110 at 32.841 kb on - strand, within LRK53_RS00110 at 33.280 kb on - strand, within LRK53_RS00115 at 33.465 kb on + strand, within LRK53_RS00115 at 33.465 kb on + strand, within LRK53_RS00115 at 33.466 kb on - strand, within LRK53_RS00115 at 33.673 kb on + strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.743 kb on - strand, within LRK53_RS00115 at 33.766 kb on + strand, within LRK53_RS00115 at 33.766 kb on + strand, within LRK53_RS00115 at 33.766 kb on + strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.767 kb on - strand, within LRK53_RS00115 at 33.895 kb on + strand, within LRK53_RS00115 at 33.895 kb on + strand, within LRK53_RS00115 at 33.916 kb on + strand, within LRK53_RS00115 at 33.965 kb on + strand, within LRK53_RS00115 at 33.965 kb on + strand, within LRK53_RS00115 at 33.966 kb on - strand, within LRK53_RS00115 at 33.966 kb on - strand, within LRK53_RS00115 at 33.966 kb on - strand, within LRK53_RS00115
Per-strain Table
Position Strand Gene LocusTag Fraction Planktonic; Day2; SGW; pH7 remove 31,501 + -0.8 31,501 + -0.6 31,501 + -0.6 31,501 + -0.4 31,501 + +0.1 31,501 + -0.7 31,501 + -1.7 31,501 + -1.1 31,501 + -1.3 31,501 + -0.7 31,501 + -1.0 31,501 + -0.6 31,501 + -0.5 31,501 + -0.0 31,501 + +0.5 31,501 + -0.1 31,501 + -0.6 31,501 + +0.9 31,587 - LRK53_RS00105 0.26 +0.1 31,736 - LRK53_RS00105 0.88 -0.0 31,769 + +0.0 31,769 + -1.0 31,769 + +0.6 31,769 + +1.0 31,769 + +0.9 31,770 - -0.8 31,770 - +0.0 31,770 - -1.0 31,770 - -0.2 31,770 - +0.7 31,770 - -0.2 31,770 - -2.8 31,819 + -0.4 31,820 - +0.8 31,820 - -0.2 32,183 + LRK53_RS00110 0.25 -0.9 32,183 + LRK53_RS00110 0.25 -1.8 32,183 + LRK53_RS00110 0.25 +0.2 32,183 + LRK53_RS00110 0.25 -0.5 32,183 + LRK53_RS00110 0.25 -0.3 32,183 + LRK53_RS00110 0.25 -1.4 32,184 - LRK53_RS00110 0.25 +1.2 32,184 - LRK53_RS00110 0.25 +0.5 32,184 - LRK53_RS00110 0.25 -1.8 32,184 - LRK53_RS00110 0.25 -1.4 32,184 - LRK53_RS00110 0.25 -0.6 32,184 - LRK53_RS00110 0.25 -0.8 32,210 + LRK53_RS00110 0.27 -1.5 32,210 + LRK53_RS00110 0.27 +0.6 32,211 - LRK53_RS00110 0.27 -0.6 32,307 - LRK53_RS00110 0.36 -0.6 32,348 + LRK53_RS00110 0.40 +0.6 32,348 + LRK53_RS00110 0.40 -0.7 32,349 - LRK53_RS00110 0.40 -0.7 32,840 + LRK53_RS00110 0.84 -2.2 32,841 - LRK53_RS00110 0.84 +1.5 32,841 - LRK53_RS00110 0.84 -0.8 33,280 - LRK53_RS00115 0.15 -1.4 33,465 + LRK53_RS00115 0.28 +0.9 33,465 + LRK53_RS00115 0.28 -0.6 33,466 - LRK53_RS00115 0.28 -0.6 33,673 + LRK53_RS00115 0.42 -0.2 33,743 - LRK53_RS00115 0.46 +0.7 33,743 - LRK53_RS00115 0.46 -0.5 33,743 - LRK53_RS00115 0.46 +0.1 33,743 - LRK53_RS00115 0.46 -1.7 33,766 + LRK53_RS00115 0.48 -0.1 33,766 + LRK53_RS00115 0.48 +1.2 33,766 + LRK53_RS00115 0.48 -0.7 33,767 - LRK53_RS00115 0.48 -0.2 33,767 - LRK53_RS00115 0.48 -0.1 33,767 - LRK53_RS00115 0.48 +1.0 33,767 - LRK53_RS00115 0.48 -1.0 33,767 - LRK53_RS00115 0.48 -0.1 33,767 - LRK53_RS00115 0.48 +1.6 33,767 - LRK53_RS00115 0.48 -1.1 33,895 + LRK53_RS00115 0.57 +0.2 33,895 + LRK53_RS00115 0.57 -1.9 33,916 + LRK53_RS00115 0.58 -0.4 33,965 + LRK53_RS00115 0.62 -1.1 33,965 + LRK53_RS00115 0.62 +0.0 33,966 - LRK53_RS00115 0.62 +0.2 33,966 - LRK53_RS00115 0.62 -1.3 33,966 - LRK53_RS00115 0.62 -2.6
Or see this region's nucleotide sequence