Strain Fitness in Erwinia amylovora T8 around OLJFJH_16900

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_16875 and OLJFJH_16880 are separated by 212 nucleotidesOLJFJH_16880 and OLJFJH_16885 are separated by 4 nucleotidesOLJFJH_16885 and OLJFJH_16890 are separated by 150 nucleotidesOLJFJH_16890 and OLJFJH_16895 are separated by 158 nucleotidesOLJFJH_16895 and OLJFJH_16900 are separated by 163 nucleotidesOLJFJH_16900 and OLJFJH_16905 are separated by 9 nucleotidesOLJFJH_16905 and OLJFJH_16910 are separated by 44 nucleotides OLJFJH_16875: OLJFJH_16875 - adenosine deaminase, at 3,571,159 to 3,572,610 _16875 OLJFJH_16880: OLJFJH_16880 - tRNA-Lys, at 3,572,823 to 3,572,898 _16880 OLJFJH_16885: OLJFJH_16885 - tRNA-Val, at 3,572,903 to 3,572,978 _16885 OLJFJH_16890: OLJFJH_16890 - tRNA-Lys, at 3,573,129 to 3,573,204 _16890 OLJFJH_16895: OLJFJH_16895 - tRNA-Lys, at 3,573,363 to 3,573,438 _16895 OLJFJH_16900: OLJFJH_16900 - cell division protein CpoB, at 3,573,602 to 3,574,381 _16900 OLJFJH_16905: OLJFJH_16905 - peptidoglycan-associated lipoprotein Pal, at 3,574,391 to 3,574,909 _16905 OLJFJH_16910: OLJFJH_16910 - Tol-Pal system protein TolB, at 3,574,954 to 3,576,246 _16910 Position (kb) 3573 3574 3575Strain fitness (log2 ratio) -2 -1 0 1 2at 3572.608 kb on + strandat 3572.613 kb on + strandat 3572.614 kb on - strandat 3573.009 kb on + strandat 3573.009 kb on + strandat 3573.009 kb on + strandat 3573.107 kb on + strandat 3573.114 kb on + strandat 3573.115 kb on - strandat 3573.116 kb on + strandat 3573.117 kb on - strandat 3573.468 kb on - strandat 3573.489 kb on - strandat 3573.489 kb on - strandat 3573.548 kb on + strandat 3573.549 kb on - strandat 3573.573 kb on + strandat 3573.603 kb on + strandat 3573.604 kb on - strandat 3573.730 kb on + strand, within OLJFJH_16900at 3573.731 kb on - strand, within OLJFJH_16900at 3573.760 kb on + strand, within OLJFJH_16900at 3573.765 kb on + strand, within OLJFJH_16900at 3573.789 kb on + strand, within OLJFJH_16900at 3573.789 kb on + strand, within OLJFJH_16900at 3573.792 kb on + strand, within OLJFJH_16900at 3573.820 kb on + strand, within OLJFJH_16900at 3573.821 kb on - strand, within OLJFJH_16900at 3573.823 kb on - strand, within OLJFJH_16900at 3573.843 kb on + strand, within OLJFJH_16900at 3573.843 kb on + strand, within OLJFJH_16900at 3573.844 kb on - strand, within OLJFJH_16900at 3573.844 kb on - strand, within OLJFJH_16900at 3573.847 kb on + strand, within OLJFJH_16900at 3573.861 kb on + strand, within OLJFJH_16900at 3573.918 kb on + strand, within OLJFJH_16900at 3573.957 kb on + strand, within OLJFJH_16900at 3573.957 kb on + strand, within OLJFJH_16900at 3574.137 kb on + strand, within OLJFJH_16900at 3574.240 kb on + strand, within OLJFJH_16900at 3574.382 kb on - strandat 3574.392 kb on + strandat 3574.398 kb on - strandat 3574.398 kb on - strandat 3574.927 kb on - strandat 3574.941 kb on - strandat 3574.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
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3,572,608 + -1.8
3,572,613 + +0.2
3,572,614 - +0.4
3,573,009 + -0.7
3,573,009 + -1.3
3,573,009 + -0.6
3,573,107 + -1.4
3,573,114 + -0.5
3,573,115 - -0.5
3,573,116 + +0.9
3,573,117 - +0.4
3,573,468 - +0.3
3,573,489 - +1.8
3,573,489 - +1.8
3,573,548 + -0.4
3,573,549 - -0.2
3,573,573 + +0.3
3,573,603 + +0.7
3,573,604 - +1.0
3,573,730 + OLJFJH_16900 0.16 -0.8
3,573,731 - OLJFJH_16900 0.17 -1.4
3,573,760 + OLJFJH_16900 0.20 -2.2
3,573,765 + OLJFJH_16900 0.21 -0.5
3,573,789 + OLJFJH_16900 0.24 -1.5
3,573,789 + OLJFJH_16900 0.24 -1.4
3,573,792 + OLJFJH_16900 0.24 -1.7
3,573,820 + OLJFJH_16900 0.28 -0.3
3,573,821 - OLJFJH_16900 0.28 -1.2
3,573,823 - OLJFJH_16900 0.28 -2.4
3,573,843 + OLJFJH_16900 0.31 -2.3
3,573,843 + OLJFJH_16900 0.31 -0.2
3,573,844 - OLJFJH_16900 0.31 +0.6
3,573,844 - OLJFJH_16900 0.31 -1.4
3,573,847 + OLJFJH_16900 0.31 -0.2
3,573,861 + OLJFJH_16900 0.33 -1.0
3,573,918 + OLJFJH_16900 0.41 -0.7
3,573,957 + OLJFJH_16900 0.46 -0.0
3,573,957 + OLJFJH_16900 0.46 +1.3
3,574,137 + OLJFJH_16900 0.69 +1.2
3,574,240 + OLJFJH_16900 0.82 +0.0
3,574,382 - -0.8
3,574,392 + +1.7
3,574,398 - +1.4
3,574,398 - -0.5
3,574,927 - -1.2
3,574,941 - +1.2
3,574,941 - +0.7

Or see this region's nucleotide sequence