Strain Fitness in Erwinia amylovora T8 around OLJFJH_14860

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_14855 and OLJFJH_14860 overlap by 4 nucleotidesOLJFJH_14860 and OLJFJH_14865 are separated by 28 nucleotides OLJFJH_14855: OLJFJH_14855 - PTS sucrose transporter subunit IIBC, at 3,138,152 to 3,139,525 _14855 OLJFJH_14860: OLJFJH_14860 - glycosyl hydrolase family 32, at 3,139,522 to 3,140,931 _14860 OLJFJH_14865: OLJFJH_14865 - transcriptional regulator, at 3,140,960 to 3,141,988 _14865 Position (kb) 3139 3140 3141Strain fitness (log2 ratio) -2 -1 0 1at 3138.557 kb on + strand, within OLJFJH_14855at 3138.558 kb on - strand, within OLJFJH_14855at 3138.558 kb on - strand, within OLJFJH_14855at 3138.558 kb on - strand, within OLJFJH_14855at 3138.589 kb on + strand, within OLJFJH_14855at 3138.589 kb on + strand, within OLJFJH_14855at 3138.590 kb on - strand, within OLJFJH_14855at 3138.601 kb on + strand, within OLJFJH_14855at 3138.601 kb on + strand, within OLJFJH_14855at 3138.839 kb on - strand, within OLJFJH_14855at 3138.870 kb on + strand, within OLJFJH_14855at 3138.871 kb on - strand, within OLJFJH_14855at 3138.890 kb on - strand, within OLJFJH_14855at 3138.892 kb on + strand, within OLJFJH_14855at 3138.892 kb on + strand, within OLJFJH_14855at 3139.301 kb on + strand, within OLJFJH_14855at 3139.307 kb on - strand, within OLJFJH_14855at 3139.307 kb on - strand, within OLJFJH_14855at 3139.307 kb on - strand, within OLJFJH_14855at 3139.376 kb on - strand, within OLJFJH_14855at 3139.443 kb on - strandat 3139.443 kb on - strandat 3139.469 kb on - strandat 3139.676 kb on - strand, within OLJFJH_14860at 3139.802 kb on - strand, within OLJFJH_14860at 3139.851 kb on - strand, within OLJFJH_14860at 3139.864 kb on + strand, within OLJFJH_14860at 3140.032 kb on + strand, within OLJFJH_14860at 3140.032 kb on + strand, within OLJFJH_14860at 3140.032 kb on + strand, within OLJFJH_14860at 3140.032 kb on + strand, within OLJFJH_14860at 3140.032 kb on + strand, within OLJFJH_14860at 3140.032 kb on + strand, within OLJFJH_14860at 3140.033 kb on - strand, within OLJFJH_14860at 3140.033 kb on - strand, within OLJFJH_14860at 3140.033 kb on - strand, within OLJFJH_14860at 3140.033 kb on - strand, within OLJFJH_14860at 3140.033 kb on - strand, within OLJFJH_14860at 3140.034 kb on + strand, within OLJFJH_14860at 3140.035 kb on - strand, within OLJFJH_14860at 3140.035 kb on - strand, within OLJFJH_14860at 3140.035 kb on - strand, within OLJFJH_14860at 3140.035 kb on - strand, within OLJFJH_14860at 3140.035 kb on - strand, within OLJFJH_14860at 3140.063 kb on + strand, within OLJFJH_14860at 3140.064 kb on - strand, within OLJFJH_14860at 3140.076 kb on - strand, within OLJFJH_14860at 3140.164 kb on + strand, within OLJFJH_14860at 3140.164 kb on + strand, within OLJFJH_14860at 3140.165 kb on - strand, within OLJFJH_14860at 3140.166 kb on + strand, within OLJFJH_14860at 3140.166 kb on + strand, within OLJFJH_14860at 3140.167 kb on - strand, within OLJFJH_14860at 3140.167 kb on - strand, within OLJFJH_14860at 3140.167 kb on - strand, within OLJFJH_14860at 3140.167 kb on - strand, within OLJFJH_14860at 3140.167 kb on - strand, within OLJFJH_14860at 3140.167 kb on - strand, within OLJFJH_14860at 3140.440 kb on + strand, within OLJFJH_14860at 3140.681 kb on + strand, within OLJFJH_14860at 3140.681 kb on + strand, within OLJFJH_14860at 3140.681 kb on + strand, within OLJFJH_14860at 3140.682 kb on - strand, within OLJFJH_14860at 3140.682 kb on - strand, within OLJFJH_14860at 3140.682 kb on - strand, within OLJFJH_14860at 3140.805 kb on + strandat 3140.806 kb on - strandat 3140.925 kb on - strandat 3140.929 kb on + strandat 3140.929 kb on + strandat 3140.930 kb on - strandat 3140.930 kb on - strandat 3140.936 kb on - strandat 3140.936 kb on - strandat 3140.977 kb on + strandat 3140.978 kb on - strandat 3140.978 kb on - strandat 3140.980 kb on + strandat 3140.981 kb on - strandat 3141.164 kb on - strand, within OLJFJH_14865at 3141.164 kb on - strand, within OLJFJH_14865at 3141.406 kb on - strand, within OLJFJH_14865at 3141.406 kb on - strand, within OLJFJH_14865at 3141.406 kb on - strand, within OLJFJH_14865at 3141.483 kb on + strand, within OLJFJH_14865at 3141.622 kb on + strand, within OLJFJH_14865at 3141.806 kb on + strand, within OLJFJH_14865at 3141.812 kb on + strand, within OLJFJH_14865at 3141.813 kb on - strand, within OLJFJH_14865

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
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3,138,557 + OLJFJH_14855 0.29 -0.3
3,138,558 - OLJFJH_14855 0.30 +0.4
3,138,558 - OLJFJH_14855 0.30 +1.0
3,138,558 - OLJFJH_14855 0.30 -1.2
3,138,589 + OLJFJH_14855 0.32 -1.0
3,138,589 + OLJFJH_14855 0.32 -0.2
3,138,590 - OLJFJH_14855 0.32 -1.1
3,138,601 + OLJFJH_14855 0.33 +0.0
3,138,601 + OLJFJH_14855 0.33 +0.3
3,138,839 - OLJFJH_14855 0.50 -1.2
3,138,870 + OLJFJH_14855 0.52 +0.4
3,138,871 - OLJFJH_14855 0.52 +0.6
3,138,890 - OLJFJH_14855 0.54 -1.3
3,138,892 + OLJFJH_14855 0.54 -0.2
3,138,892 + OLJFJH_14855 0.54 +0.3
3,139,301 + OLJFJH_14855 0.84 -0.2
3,139,307 - OLJFJH_14855 0.84 -1.5
3,139,307 - OLJFJH_14855 0.84 -0.5
3,139,307 - OLJFJH_14855 0.84 -1.1
3,139,376 - OLJFJH_14855 0.89 -0.8
3,139,443 - -1.1
3,139,443 - -0.5
3,139,469 - +0.6
3,139,676 - OLJFJH_14860 0.11 -0.1
3,139,802 - OLJFJH_14860 0.20 -0.7
3,139,851 - OLJFJH_14860 0.23 +0.1
3,139,864 + OLJFJH_14860 0.24 -0.4
3,140,032 + OLJFJH_14860 0.36 -1.4
3,140,032 + OLJFJH_14860 0.36 +1.3
3,140,032 + OLJFJH_14860 0.36 -0.9
3,140,032 + OLJFJH_14860 0.36 -0.8
3,140,032 + OLJFJH_14860 0.36 -0.7
3,140,032 + OLJFJH_14860 0.36 -0.8
3,140,033 - OLJFJH_14860 0.36 -1.1
3,140,033 - OLJFJH_14860 0.36 -2.2
3,140,033 - OLJFJH_14860 0.36 -0.6
3,140,033 - OLJFJH_14860 0.36 -1.4
3,140,033 - OLJFJH_14860 0.36 -0.9
3,140,034 + OLJFJH_14860 0.36 -1.2
3,140,035 - OLJFJH_14860 0.36 -1.4
3,140,035 - OLJFJH_14860 0.36 -1.9
3,140,035 - OLJFJH_14860 0.36 -2.3
3,140,035 - OLJFJH_14860 0.36 -1.6
3,140,035 - OLJFJH_14860 0.36 -0.2
3,140,063 + OLJFJH_14860 0.38 -0.4
3,140,064 - OLJFJH_14860 0.38 -0.9
3,140,076 - OLJFJH_14860 0.39 -0.6
3,140,164 + OLJFJH_14860 0.46 -0.5
3,140,164 + OLJFJH_14860 0.46 -0.4
3,140,165 - OLJFJH_14860 0.46 +0.8
3,140,166 + OLJFJH_14860 0.46 +0.2
3,140,166 + OLJFJH_14860 0.46 -0.9
3,140,167 - OLJFJH_14860 0.46 -1.9
3,140,167 - OLJFJH_14860 0.46 -1.6
3,140,167 - OLJFJH_14860 0.46 -0.9
3,140,167 - OLJFJH_14860 0.46 -1.7
3,140,167 - OLJFJH_14860 0.46 +0.2
3,140,167 - OLJFJH_14860 0.46 -1.1
3,140,440 + OLJFJH_14860 0.65 -2.4
3,140,681 + OLJFJH_14860 0.82 +0.5
3,140,681 + OLJFJH_14860 0.82 -0.3
3,140,681 + OLJFJH_14860 0.82 -0.4
3,140,682 - OLJFJH_14860 0.82 -0.7
3,140,682 - OLJFJH_14860 0.82 -0.7
3,140,682 - OLJFJH_14860 0.82 -0.5
3,140,805 + -0.5
3,140,806 - -1.5
3,140,925 - +1.0
3,140,929 + +0.7
3,140,929 + +0.1
3,140,930 - -1.0
3,140,930 - +0.5
3,140,936 - -0.2
3,140,936 - +0.6
3,140,977 + +0.1
3,140,978 - +0.6
3,140,978 - +0.0
3,140,980 + +1.2
3,140,981 - -0.1
3,141,164 - OLJFJH_14865 0.20 -0.8
3,141,164 - OLJFJH_14865 0.20 -1.4
3,141,406 - OLJFJH_14865 0.43 -0.4
3,141,406 - OLJFJH_14865 0.43 +1.0
3,141,406 - OLJFJH_14865 0.43 -0.3
3,141,483 + OLJFJH_14865 0.51 +0.2
3,141,622 + OLJFJH_14865 0.64 -0.2
3,141,806 + OLJFJH_14865 0.82 +0.3
3,141,812 + OLJFJH_14865 0.83 -0.7
3,141,813 - OLJFJH_14865 0.83 -0.3

Or see this region's nucleotide sequence