Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_10665 and OLJFJH_10670 are separated by 477 nucleotides OLJFJH_10670 and OLJFJH_10675 are separated by 54 nucleotides OLJFJH_10675 and OLJFJH_10680 are separated by 1 nucleotides
OLJFJH_10665: OLJFJH_10665 - hypothetical protein, at 2,207,741 to 2,207,905
_10665
OLJFJH_10670: OLJFJH_10670 - SymE-toxin domain-containing protein, at 2,208,383 to 2,208,676
_10670
OLJFJH_10675: OLJFJH_10675 - hypothetical protein, at 2,208,731 to 2,209,048
_10675
OLJFJH_10680: OLJFJH_10680 - Uncharacterized conserved protein RhaS contains 28 RHS repeats, at 2,209,050 to 2,210,435
_10680
Position (kb)
2208
2209
2210 Strain fitness (log2 ratio)
-2
-1
0
1 at 2207.866 kb on + strand, within OLJFJH_10665 at 2207.867 kb on - strand, within OLJFJH_10665 at 2207.867 kb on - strand, within OLJFJH_10665 at 2207.869 kb on - strand, within OLJFJH_10665 at 2207.869 kb on - strand, within OLJFJH_10665 at 2207.869 kb on - strand, within OLJFJH_10665 at 2208.019 kb on + strand at 2208.020 kb on - strand at 2208.476 kb on - strand, within OLJFJH_10670 at 2208.691 kb on + strand at 2208.737 kb on - strand at 2208.817 kb on - strand, within OLJFJH_10675 at 2208.852 kb on + strand, within OLJFJH_10675 at 2208.922 kb on + strand, within OLJFJH_10675 at 2209.085 kb on + strand at 2209.208 kb on + strand, within OLJFJH_10680 at 2209.259 kb on - strand, within OLJFJH_10680 at 2209.340 kb on - strand, within OLJFJH_10680 at 2209.421 kb on + strand, within OLJFJH_10680 at 2209.421 kb on + strand, within OLJFJH_10680 at 2209.422 kb on - strand, within OLJFJH_10680
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4 remove 2,207,866 + OLJFJH_10665 0.76 -0.8 2,207,867 - OLJFJH_10665 0.76 +0.5 2,207,867 - OLJFJH_10665 0.76 -0.8 2,207,869 - OLJFJH_10665 0.78 -0.9 2,207,869 - OLJFJH_10665 0.78 -0.1 2,207,869 - OLJFJH_10665 0.78 -2.2 2,208,019 + -0.3 2,208,020 - +0.1 2,208,476 - OLJFJH_10670 0.32 +1.1 2,208,691 + +0.7 2,208,737 - -0.1 2,208,817 - OLJFJH_10675 0.27 -0.8 2,208,852 + OLJFJH_10675 0.38 -1.1 2,208,922 + OLJFJH_10675 0.60 -0.8 2,209,085 + +0.4 2,209,208 + OLJFJH_10680 0.11 +1.6 2,209,259 - OLJFJH_10680 0.15 +0.2 2,209,340 - OLJFJH_10680 0.21 +0.1 2,209,421 + OLJFJH_10680 0.27 -0.6 2,209,421 + OLJFJH_10680 0.27 -0.6 2,209,422 - OLJFJH_10680 0.27 -0.0
Or see this region's nucleotide sequence