Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_09705 and OLJFJH_09710 are separated by 429 nucleotides OLJFJH_09710 and OLJFJH_09715 are separated by 244 nucleotides OLJFJH_09715 and OLJFJH_09720 are separated by 362 nucleotides
OLJFJH_09705: OLJFJH_09705 - bifunctional chorismate mutase/prephenate dehydrogenase, at 2,000,532 to 2,001,653
_09705
OLJFJH_09710: OLJFJH_09710 - bifunctional chorismate mutase/prephenate dehydratase, at 2,002,083 to 2,003,243
_09710
OLJFJH_09715: OLJFJH_09715 - ribosome-associated translation inhibitor RaiA, at 2,003,488 to 2,003,826
_09715
OLJFJH_09720: OLJFJH_09720 - outer membrane protein assembly factor BamD, at 2,004,189 to 2,004,920
_09720
Position (kb)
2002
2003
2004 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2001.651 kb on + strand at 2001.773 kb on + strand at 2001.773 kb on + strand at 2001.854 kb on - strand at 2001.855 kb on + strand at 2001.856 kb on - strand at 2001.856 kb on - strand at 2001.883 kb on - strand at 2002.041 kb on - strand at 2002.107 kb on - strand at 2002.216 kb on + strand, within OLJFJH_09710 at 2002.217 kb on - strand, within OLJFJH_09710 at 2002.217 kb on - strand, within OLJFJH_09710 at 2002.450 kb on - strand, within OLJFJH_09710 at 2002.463 kb on - strand, within OLJFJH_09710 at 2002.735 kb on + strand, within OLJFJH_09710 at 2002.735 kb on + strand, within OLJFJH_09710 at 2002.735 kb on + strand, within OLJFJH_09710 at 2002.735 kb on + strand, within OLJFJH_09710 at 2002.736 kb on - strand, within OLJFJH_09710 at 2002.763 kb on + strand, within OLJFJH_09710 at 2002.779 kb on + strand, within OLJFJH_09710 at 2002.779 kb on + strand, within OLJFJH_09710 at 2002.780 kb on - strand, within OLJFJH_09710 at 2002.818 kb on + strand, within OLJFJH_09710 at 2002.818 kb on + strand, within OLJFJH_09710 at 2002.819 kb on - strand, within OLJFJH_09710 at 2002.819 kb on - strand, within OLJFJH_09710 at 2003.004 kb on - strand, within OLJFJH_09710 at 2003.025 kb on + strand, within OLJFJH_09710 at 2003.025 kb on + strand, within OLJFJH_09710 at 2003.026 kb on - strand, within OLJFJH_09710 at 2003.026 kb on - strand, within OLJFJH_09710 at 2003.026 kb on - strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.027 kb on + strand, within OLJFJH_09710 at 2003.028 kb on - strand, within OLJFJH_09710 at 2003.028 kb on - strand, within OLJFJH_09710 at 2003.028 kb on - strand, within OLJFJH_09710 at 2003.028 kb on - strand, within OLJFJH_09710 at 2003.028 kb on - strand, within OLJFJH_09710 at 2003.029 kb on + strand, within OLJFJH_09710 at 2003.029 kb on - strand, within OLJFJH_09710 at 2003.030 kb on - strand, within OLJFJH_09710 at 2003.243 kb on + strand at 2003.243 kb on + strand at 2003.244 kb on - strand at 2003.244 kb on - strand at 2003.250 kb on + strand at 2003.250 kb on + strand at 2003.250 kb on + strand at 2003.294 kb on + strand at 2003.295 kb on - strand at 2003.405 kb on + strand at 2003.416 kb on + strand at 2003.448 kb on - strand at 2003.613 kb on + strand, within OLJFJH_09715 at 2003.615 kb on + strand, within OLJFJH_09715 at 2003.615 kb on + strand, within OLJFJH_09715 at 2003.615 kb on + strand, within OLJFJH_09715 at 2003.615 kb on + strand, within OLJFJH_09715 at 2003.615 kb on + strand, within OLJFJH_09715 at 2003.615 kb on + strand, within OLJFJH_09715 at 2003.616 kb on - strand, within OLJFJH_09715 at 2003.616 kb on - strand, within OLJFJH_09715 at 2003.616 kb on - strand, within OLJFJH_09715 at 2003.616 kb on - strand, within OLJFJH_09715 at 2003.616 kb on - strand, within OLJFJH_09715 at 2003.616 kb on - strand, within OLJFJH_09715 at 2003.619 kb on + strand, within OLJFJH_09715 at 2003.619 kb on + strand, within OLJFJH_09715 at 2003.619 kb on + strand, within OLJFJH_09715 at 2003.619 kb on + strand, within OLJFJH_09715 at 2003.619 kb on + strand, within OLJFJH_09715 at 2003.620 kb on - strand, within OLJFJH_09715 at 2003.620 kb on - strand, within OLJFJH_09715 at 2003.794 kb on - strand at 2003.827 kb on - strand at 2003.829 kb on + strand at 2003.829 kb on + strand at 2003.829 kb on + strand at 2003.829 kb on + strand at 2003.829 kb on + strand at 2003.833 kb on + strand at 2003.870 kb on - strand at 2003.957 kb on - strand at 2004.025 kb on - strand at 2004.025 kb on - strand at 2004.099 kb on + strand at 2004.100 kb on - strand at 2004.100 kb on - strand at 2004.240 kb on + strand at 2004.241 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4 remove 2,001,651 + +0.6 2,001,773 + -0.5 2,001,773 + -0.0 2,001,854 - +0.5 2,001,855 + -0.5 2,001,856 - +0.3 2,001,856 - -0.6 2,001,883 - +0.6 2,002,041 - -0.9 2,002,107 - -0.3 2,002,216 + OLJFJH_09710 0.11 +0.3 2,002,217 - OLJFJH_09710 0.12 -1.2 2,002,217 - OLJFJH_09710 0.12 +0.0 2,002,450 - OLJFJH_09710 0.32 -1.7 2,002,463 - OLJFJH_09710 0.33 -0.7 2,002,735 + OLJFJH_09710 0.56 -0.8 2,002,735 + OLJFJH_09710 0.56 -0.3 2,002,735 + OLJFJH_09710 0.56 -0.2 2,002,735 + OLJFJH_09710 0.56 +0.5 2,002,736 - OLJFJH_09710 0.56 -0.3 2,002,763 + OLJFJH_09710 0.59 -1.0 2,002,779 + OLJFJH_09710 0.60 +1.0 2,002,779 + OLJFJH_09710 0.60 -1.0 2,002,780 - OLJFJH_09710 0.60 -0.5 2,002,818 + OLJFJH_09710 0.63 -1.7 2,002,818 + OLJFJH_09710 0.63 -0.6 2,002,819 - OLJFJH_09710 0.63 -0.5 2,002,819 - OLJFJH_09710 0.63 -1.4 2,003,004 - OLJFJH_09710 0.79 -0.8 2,003,025 + OLJFJH_09710 0.81 -0.5 2,003,025 + OLJFJH_09710 0.81 -0.6 2,003,026 - OLJFJH_09710 0.81 -0.9 2,003,026 - OLJFJH_09710 0.81 -0.9 2,003,026 - OLJFJH_09710 0.81 -1.9 2,003,027 + OLJFJH_09710 0.81 -0.8 2,003,027 + OLJFJH_09710 0.81 -1.4 2,003,027 + OLJFJH_09710 0.81 -1.8 2,003,027 + OLJFJH_09710 0.81 -1.6 2,003,027 + OLJFJH_09710 0.81 -1.4 2,003,027 + OLJFJH_09710 0.81 -2.4 2,003,027 + OLJFJH_09710 0.81 -1.3 2,003,027 + OLJFJH_09710 0.81 -0.9 2,003,028 - OLJFJH_09710 0.81 -1.6 2,003,028 - OLJFJH_09710 0.81 -3.0 2,003,028 - OLJFJH_09710 0.81 -0.5 2,003,028 - OLJFJH_09710 0.81 -1.3 2,003,028 - OLJFJH_09710 0.81 -2.0 2,003,029 + OLJFJH_09710 0.81 -1.5 2,003,029 - OLJFJH_09710 0.81 -1.1 2,003,030 - OLJFJH_09710 0.82 -1.4 2,003,243 + +0.7 2,003,243 + -1.7 2,003,244 - -1.3 2,003,244 - -1.6 2,003,250 + -1.5 2,003,250 + -1.2 2,003,250 + -0.7 2,003,294 + -0.3 2,003,295 - -0.2 2,003,405 + -1.4 2,003,416 + -0.7 2,003,448 - -0.0 2,003,613 + OLJFJH_09715 0.37 -1.4 2,003,615 + OLJFJH_09715 0.37 +0.5 2,003,615 + OLJFJH_09715 0.37 +0.4 2,003,615 + OLJFJH_09715 0.37 +0.2 2,003,615 + OLJFJH_09715 0.37 -0.3 2,003,615 + OLJFJH_09715 0.37 -1.1 2,003,615 + OLJFJH_09715 0.37 +0.2 2,003,616 - OLJFJH_09715 0.38 -1.0 2,003,616 - OLJFJH_09715 0.38 -0.7 2,003,616 - OLJFJH_09715 0.38 -1.1 2,003,616 - OLJFJH_09715 0.38 +0.7 2,003,616 - OLJFJH_09715 0.38 +0.1 2,003,616 - OLJFJH_09715 0.38 -1.0 2,003,619 + OLJFJH_09715 0.39 +0.2 2,003,619 + OLJFJH_09715 0.39 -0.1 2,003,619 + OLJFJH_09715 0.39 -0.7 2,003,619 + OLJFJH_09715 0.39 -0.5 2,003,619 + OLJFJH_09715 0.39 -0.6 2,003,620 - OLJFJH_09715 0.39 +1.0 2,003,620 - OLJFJH_09715 0.39 +0.2 2,003,794 - -0.6 2,003,827 - -0.7 2,003,829 + -3.2 2,003,829 + +0.2 2,003,829 + -0.6 2,003,829 + +0.4 2,003,829 + +1.3 2,003,833 + -0.3 2,003,870 - +0.4 2,003,957 - -0.2 2,004,025 - +0.2 2,004,025 - -0.4 2,004,099 + -0.8 2,004,100 - -1.1 2,004,100 - +0.5 2,004,240 + -1.8 2,004,241 - -0.8
Or see this region's nucleotide sequence