Strain Fitness in Erwinia amylovora T8 around OLJFJH_09710

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_09705 and OLJFJH_09710 are separated by 429 nucleotidesOLJFJH_09710 and OLJFJH_09715 are separated by 244 nucleotidesOLJFJH_09715 and OLJFJH_09720 are separated by 362 nucleotides OLJFJH_09705: OLJFJH_09705 - bifunctional chorismate mutase/prephenate dehydrogenase, at 2,000,532 to 2,001,653 _09705 OLJFJH_09710: OLJFJH_09710 - bifunctional chorismate mutase/prephenate dehydratase, at 2,002,083 to 2,003,243 _09710 OLJFJH_09715: OLJFJH_09715 - ribosome-associated translation inhibitor RaiA, at 2,003,488 to 2,003,826 _09715 OLJFJH_09720: OLJFJH_09720 - outer membrane protein assembly factor BamD, at 2,004,189 to 2,004,920 _09720 Position (kb) 2002 2003 2004Strain fitness (log2 ratio) -3 -2 -1 0 1at 2001.651 kb on + strandat 2001.773 kb on + strandat 2001.773 kb on + strandat 2001.854 kb on - strandat 2001.855 kb on + strandat 2001.856 kb on - strandat 2001.856 kb on - strandat 2001.883 kb on - strandat 2002.041 kb on - strandat 2002.107 kb on - strandat 2002.216 kb on + strand, within OLJFJH_09710at 2002.217 kb on - strand, within OLJFJH_09710at 2002.217 kb on - strand, within OLJFJH_09710at 2002.450 kb on - strand, within OLJFJH_09710at 2002.463 kb on - strand, within OLJFJH_09710at 2002.735 kb on + strand, within OLJFJH_09710at 2002.735 kb on + strand, within OLJFJH_09710at 2002.735 kb on + strand, within OLJFJH_09710at 2002.735 kb on + strand, within OLJFJH_09710at 2002.736 kb on - strand, within OLJFJH_09710at 2002.763 kb on + strand, within OLJFJH_09710at 2002.779 kb on + strand, within OLJFJH_09710at 2002.779 kb on + strand, within OLJFJH_09710at 2002.780 kb on - strand, within OLJFJH_09710at 2002.818 kb on + strand, within OLJFJH_09710at 2002.818 kb on + strand, within OLJFJH_09710at 2002.819 kb on - strand, within OLJFJH_09710at 2002.819 kb on - strand, within OLJFJH_09710at 2003.004 kb on - strand, within OLJFJH_09710at 2003.025 kb on + strand, within OLJFJH_09710at 2003.025 kb on + strand, within OLJFJH_09710at 2003.026 kb on - strand, within OLJFJH_09710at 2003.026 kb on - strand, within OLJFJH_09710at 2003.026 kb on - strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.027 kb on + strand, within OLJFJH_09710at 2003.028 kb on - strand, within OLJFJH_09710at 2003.028 kb on - strand, within OLJFJH_09710at 2003.028 kb on - strand, within OLJFJH_09710at 2003.028 kb on - strand, within OLJFJH_09710at 2003.028 kb on - strand, within OLJFJH_09710at 2003.029 kb on + strand, within OLJFJH_09710at 2003.029 kb on - strand, within OLJFJH_09710at 2003.030 kb on - strand, within OLJFJH_09710at 2003.243 kb on + strandat 2003.243 kb on + strandat 2003.244 kb on - strandat 2003.244 kb on - strandat 2003.250 kb on + strandat 2003.250 kb on + strandat 2003.250 kb on + strandat 2003.294 kb on + strandat 2003.295 kb on - strandat 2003.405 kb on + strandat 2003.416 kb on + strandat 2003.448 kb on - strandat 2003.613 kb on + strand, within OLJFJH_09715at 2003.615 kb on + strand, within OLJFJH_09715at 2003.615 kb on + strand, within OLJFJH_09715at 2003.615 kb on + strand, within OLJFJH_09715at 2003.615 kb on + strand, within OLJFJH_09715at 2003.615 kb on + strand, within OLJFJH_09715at 2003.615 kb on + strand, within OLJFJH_09715at 2003.616 kb on - strand, within OLJFJH_09715at 2003.616 kb on - strand, within OLJFJH_09715at 2003.616 kb on - strand, within OLJFJH_09715at 2003.616 kb on - strand, within OLJFJH_09715at 2003.616 kb on - strand, within OLJFJH_09715at 2003.616 kb on - strand, within OLJFJH_09715at 2003.619 kb on + strand, within OLJFJH_09715at 2003.619 kb on + strand, within OLJFJH_09715at 2003.619 kb on + strand, within OLJFJH_09715at 2003.619 kb on + strand, within OLJFJH_09715at 2003.619 kb on + strand, within OLJFJH_09715at 2003.620 kb on - strand, within OLJFJH_09715at 2003.620 kb on - strand, within OLJFJH_09715at 2003.794 kb on - strandat 2003.827 kb on - strandat 2003.829 kb on + strandat 2003.829 kb on + strandat 2003.829 kb on + strandat 2003.829 kb on + strandat 2003.829 kb on + strandat 2003.833 kb on + strandat 2003.870 kb on - strandat 2003.957 kb on - strandat 2004.025 kb on - strandat 2004.025 kb on - strandat 2004.099 kb on + strandat 2004.100 kb on - strandat 2004.100 kb on - strandat 2004.240 kb on + strandat 2004.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
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2,001,651 + +0.6
2,001,773 + -0.5
2,001,773 + -0.0
2,001,854 - +0.5
2,001,855 + -0.5
2,001,856 - +0.3
2,001,856 - -0.6
2,001,883 - +0.6
2,002,041 - -0.9
2,002,107 - -0.3
2,002,216 + OLJFJH_09710 0.11 +0.3
2,002,217 - OLJFJH_09710 0.12 -1.2
2,002,217 - OLJFJH_09710 0.12 +0.0
2,002,450 - OLJFJH_09710 0.32 -1.7
2,002,463 - OLJFJH_09710 0.33 -0.7
2,002,735 + OLJFJH_09710 0.56 -0.8
2,002,735 + OLJFJH_09710 0.56 -0.3
2,002,735 + OLJFJH_09710 0.56 -0.2
2,002,735 + OLJFJH_09710 0.56 +0.5
2,002,736 - OLJFJH_09710 0.56 -0.3
2,002,763 + OLJFJH_09710 0.59 -1.0
2,002,779 + OLJFJH_09710 0.60 +1.0
2,002,779 + OLJFJH_09710 0.60 -1.0
2,002,780 - OLJFJH_09710 0.60 -0.5
2,002,818 + OLJFJH_09710 0.63 -1.7
2,002,818 + OLJFJH_09710 0.63 -0.6
2,002,819 - OLJFJH_09710 0.63 -0.5
2,002,819 - OLJFJH_09710 0.63 -1.4
2,003,004 - OLJFJH_09710 0.79 -0.8
2,003,025 + OLJFJH_09710 0.81 -0.5
2,003,025 + OLJFJH_09710 0.81 -0.6
2,003,026 - OLJFJH_09710 0.81 -0.9
2,003,026 - OLJFJH_09710 0.81 -0.9
2,003,026 - OLJFJH_09710 0.81 -1.9
2,003,027 + OLJFJH_09710 0.81 -0.8
2,003,027 + OLJFJH_09710 0.81 -1.4
2,003,027 + OLJFJH_09710 0.81 -1.8
2,003,027 + OLJFJH_09710 0.81 -1.6
2,003,027 + OLJFJH_09710 0.81 -1.4
2,003,027 + OLJFJH_09710 0.81 -2.4
2,003,027 + OLJFJH_09710 0.81 -1.3
2,003,027 + OLJFJH_09710 0.81 -0.9
2,003,028 - OLJFJH_09710 0.81 -1.6
2,003,028 - OLJFJH_09710 0.81 -3.0
2,003,028 - OLJFJH_09710 0.81 -0.5
2,003,028 - OLJFJH_09710 0.81 -1.3
2,003,028 - OLJFJH_09710 0.81 -2.0
2,003,029 + OLJFJH_09710 0.81 -1.5
2,003,029 - OLJFJH_09710 0.81 -1.1
2,003,030 - OLJFJH_09710 0.82 -1.4
2,003,243 + +0.7
2,003,243 + -1.7
2,003,244 - -1.3
2,003,244 - -1.6
2,003,250 + -1.5
2,003,250 + -1.2
2,003,250 + -0.7
2,003,294 + -0.3
2,003,295 - -0.2
2,003,405 + -1.4
2,003,416 + -0.7
2,003,448 - -0.0
2,003,613 + OLJFJH_09715 0.37 -1.4
2,003,615 + OLJFJH_09715 0.37 +0.5
2,003,615 + OLJFJH_09715 0.37 +0.4
2,003,615 + OLJFJH_09715 0.37 +0.2
2,003,615 + OLJFJH_09715 0.37 -0.3
2,003,615 + OLJFJH_09715 0.37 -1.1
2,003,615 + OLJFJH_09715 0.37 +0.2
2,003,616 - OLJFJH_09715 0.38 -1.0
2,003,616 - OLJFJH_09715 0.38 -0.7
2,003,616 - OLJFJH_09715 0.38 -1.1
2,003,616 - OLJFJH_09715 0.38 +0.7
2,003,616 - OLJFJH_09715 0.38 +0.1
2,003,616 - OLJFJH_09715 0.38 -1.0
2,003,619 + OLJFJH_09715 0.39 +0.2
2,003,619 + OLJFJH_09715 0.39 -0.1
2,003,619 + OLJFJH_09715 0.39 -0.7
2,003,619 + OLJFJH_09715 0.39 -0.5
2,003,619 + OLJFJH_09715 0.39 -0.6
2,003,620 - OLJFJH_09715 0.39 +1.0
2,003,620 - OLJFJH_09715 0.39 +0.2
2,003,794 - -0.6
2,003,827 - -0.7
2,003,829 + -3.2
2,003,829 + +0.2
2,003,829 + -0.6
2,003,829 + +0.4
2,003,829 + +1.3
2,003,833 + -0.3
2,003,870 - +0.4
2,003,957 - -0.2
2,004,025 - +0.2
2,004,025 - -0.4
2,004,099 + -0.8
2,004,100 - -1.1
2,004,100 - +0.5
2,004,240 + -1.8
2,004,241 - -0.8

Or see this region's nucleotide sequence