Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_08050 and OLJFJH_08055 are separated by 214 nucleotides OLJFJH_08055 and OLJFJH_08060 are separated by 126 nucleotides
OLJFJH_08050: OLJFJH_08050 - type III effector HrpK, at 1,663,291 to 1,665,579
_08050
OLJFJH_08055: OLJFJH_08055 - amidinotransferase, at 1,665,794 to 1,666,894
_08055
OLJFJH_08060: OLJFJH_08060 - serine kinase, at 1,667,021 to 1,668,268
_08060
Position (kb)
1665
1666
1667 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1664.831 kb on + strand, within OLJFJH_08050 at 1664.832 kb on - strand, within OLJFJH_08050 at 1664.924 kb on - strand, within OLJFJH_08050 at 1664.971 kb on + strand, within OLJFJH_08050 at 1665.284 kb on + strand, within OLJFJH_08050 at 1665.285 kb on - strand, within OLJFJH_08050 at 1665.288 kb on + strand, within OLJFJH_08050 at 1665.501 kb on + strand at 1665.502 kb on - strand at 1665.531 kb on + strand at 1665.627 kb on + strand at 1665.685 kb on - strand at 1665.705 kb on + strand at 1665.706 kb on - strand at 1665.760 kb on - strand at 1665.833 kb on - strand at 1665.857 kb on - strand at 1665.904 kb on + strand, within OLJFJH_08055 at 1665.913 kb on - strand, within OLJFJH_08055 at 1665.977 kb on + strand, within OLJFJH_08055 at 1665.978 kb on - strand, within OLJFJH_08055 at 1666.248 kb on + strand, within OLJFJH_08055 at 1666.249 kb on - strand, within OLJFJH_08055 at 1666.511 kb on + strand, within OLJFJH_08055 at 1666.511 kb on + strand, within OLJFJH_08055 at 1666.677 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.679 kb on + strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.680 kb on - strand, within OLJFJH_08055 at 1666.710 kb on + strand, within OLJFJH_08055 at 1666.710 kb on + strand, within OLJFJH_08055 at 1666.710 kb on + strand, within OLJFJH_08055 at 1666.710 kb on + strand, within OLJFJH_08055 at 1666.711 kb on - strand, within OLJFJH_08055 at 1666.711 kb on - strand, within OLJFJH_08055 at 1666.711 kb on - strand, within OLJFJH_08055 at 1666.887 kb on - strand at 1666.887 kb on - strand at 1666.887 kb on - strand at 1667.002 kb on - strand at 1667.002 kb on - strand at 1667.002 kb on - strand at 1667.040 kb on + strand at 1667.041 kb on - strand at 1667.074 kb on + strand at 1667.122 kb on + strand at 1667.122 kb on + strand at 1667.123 kb on - strand at 1667.123 kb on - strand at 1667.142 kb on - strand at 1667.166 kb on + strand, within OLJFJH_08060 at 1667.167 kb on - strand, within OLJFJH_08060 at 1667.236 kb on + strand, within OLJFJH_08060 at 1667.289 kb on + strand, within OLJFJH_08060 at 1667.366 kb on - strand, within OLJFJH_08060 at 1667.482 kb on + strand, within OLJFJH_08060 at 1667.482 kb on + strand, within OLJFJH_08060 at 1667.483 kb on - strand, within OLJFJH_08060 at 1667.600 kb on + strand, within OLJFJH_08060 at 1667.619 kb on - strand, within OLJFJH_08060 at 1667.619 kb on - strand, within OLJFJH_08060 at 1667.619 kb on - strand, within OLJFJH_08060 at 1667.721 kb on + strand, within OLJFJH_08060 at 1667.722 kb on - strand, within OLJFJH_08060 at 1667.731 kb on - strand, within OLJFJH_08060 at 1667.815 kb on + strand, within OLJFJH_08060 at 1667.817 kb on + strand, within OLJFJH_08060 at 1667.817 kb on + strand, within OLJFJH_08060 at 1667.817 kb on + strand, within OLJFJH_08060 at 1667.817 kb on + strand, within OLJFJH_08060 at 1667.817 kb on + strand, within OLJFJH_08060 at 1667.818 kb on - strand, within OLJFJH_08060 at 1667.818 kb on - strand, within OLJFJH_08060
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4 remove 1,664,831 + OLJFJH_08050 0.67 -1.2 1,664,832 - OLJFJH_08050 0.67 -0.1 1,664,924 - OLJFJH_08050 0.71 +0.1 1,664,971 + OLJFJH_08050 0.73 +0.3 1,665,284 + OLJFJH_08050 0.87 -0.2 1,665,285 - OLJFJH_08050 0.87 +0.1 1,665,288 + OLJFJH_08050 0.87 -0.2 1,665,501 + +0.2 1,665,502 - -0.1 1,665,531 + +0.2 1,665,627 + +0.3 1,665,685 - -0.1 1,665,705 + -1.0 1,665,706 - -0.1 1,665,760 - -0.7 1,665,833 - +0.2 1,665,857 - -0.5 1,665,904 + OLJFJH_08055 0.10 -0.0 1,665,913 - OLJFJH_08055 0.11 +0.9 1,665,977 + OLJFJH_08055 0.17 +1.3 1,665,978 - OLJFJH_08055 0.17 +0.1 1,666,248 + OLJFJH_08055 0.41 -0.8 1,666,249 - OLJFJH_08055 0.41 +0.7 1,666,511 + OLJFJH_08055 0.65 +0.7 1,666,511 + OLJFJH_08055 0.65 +0.9 1,666,677 + OLJFJH_08055 0.80 +0.9 1,666,679 + OLJFJH_08055 0.80 -0.2 1,666,679 + OLJFJH_08055 0.80 +0.9 1,666,679 + OLJFJH_08055 0.80 +2.1 1,666,679 + OLJFJH_08055 0.80 +0.1 1,666,679 + OLJFJH_08055 0.80 +0.2 1,666,679 + OLJFJH_08055 0.80 +0.2 1,666,679 + OLJFJH_08055 0.80 +0.8 1,666,679 + OLJFJH_08055 0.80 +0.2 1,666,679 + OLJFJH_08055 0.80 +0.0 1,666,680 - OLJFJH_08055 0.80 -1.7 1,666,680 - OLJFJH_08055 0.80 -0.4 1,666,680 - OLJFJH_08055 0.80 -0.1 1,666,680 - OLJFJH_08055 0.80 +0.3 1,666,680 - OLJFJH_08055 0.80 +0.4 1,666,680 - OLJFJH_08055 0.80 +0.2 1,666,680 - OLJFJH_08055 0.80 -0.2 1,666,680 - OLJFJH_08055 0.80 -0.1 1,666,680 - OLJFJH_08055 0.80 +0.9 1,666,680 - OLJFJH_08055 0.80 -1.7 1,666,680 - OLJFJH_08055 0.80 +2.0 1,666,680 - OLJFJH_08055 0.80 -0.5 1,666,680 - OLJFJH_08055 0.80 -2.4 1,666,680 - OLJFJH_08055 0.80 -1.8 1,666,710 + OLJFJH_08055 0.83 +0.5 1,666,710 + OLJFJH_08055 0.83 -0.4 1,666,710 + OLJFJH_08055 0.83 +0.7 1,666,710 + OLJFJH_08055 0.83 -1.6 1,666,711 - OLJFJH_08055 0.83 -0.9 1,666,711 - OLJFJH_08055 0.83 +0.2 1,666,711 - OLJFJH_08055 0.83 -0.2 1,666,887 - -1.1 1,666,887 - +0.3 1,666,887 - +1.8 1,667,002 - -1.6 1,667,002 - +1.0 1,667,002 - -0.5 1,667,040 + -0.2 1,667,041 - -0.1 1,667,074 + -0.2 1,667,122 + -1.8 1,667,122 + +0.3 1,667,123 - +0.0 1,667,123 - -1.5 1,667,142 - -0.4 1,667,166 + OLJFJH_08060 0.12 -0.4 1,667,167 - OLJFJH_08060 0.12 -1.5 1,667,236 + OLJFJH_08060 0.17 +0.5 1,667,289 + OLJFJH_08060 0.21 -0.6 1,667,366 - OLJFJH_08060 0.28 +1.9 1,667,482 + OLJFJH_08060 0.37 -1.1 1,667,482 + OLJFJH_08060 0.37 -0.7 1,667,483 - OLJFJH_08060 0.37 -1.1 1,667,600 + OLJFJH_08060 0.46 +1.0 1,667,619 - OLJFJH_08060 0.48 +0.2 1,667,619 - OLJFJH_08060 0.48 -0.4 1,667,619 - OLJFJH_08060 0.48 +0.1 1,667,721 + OLJFJH_08060 0.56 +0.2 1,667,722 - OLJFJH_08060 0.56 -0.7 1,667,731 - OLJFJH_08060 0.57 +0.1 1,667,815 + OLJFJH_08060 0.64 +0.5 1,667,817 + OLJFJH_08060 0.64 -0.2 1,667,817 + OLJFJH_08060 0.64 -1.1 1,667,817 + OLJFJH_08060 0.64 +0.8 1,667,817 + OLJFJH_08060 0.64 -0.6 1,667,817 + OLJFJH_08060 0.64 -1.0 1,667,818 - OLJFJH_08060 0.64 -1.2 1,667,818 - OLJFJH_08060 0.64 +2.0
Or see this region's nucleotide sequence