Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_02965 and OLJFJH_02970 are separated by 136 nucleotides OLJFJH_02970 and OLJFJH_02975 are separated by 25 nucleotides OLJFJH_02975 and OLJFJH_02980 overlap by 4 nucleotides
OLJFJH_02965: OLJFJH_02965 - phosphoribosylamine--glycine ligase, at 535,023 to 536,276
_02965
OLJFJH_02970: OLJFJH_02970 - histidine--tRNA ligase, at 536,413 to 537,732
_02970
OLJFJH_02975: OLJFJH_02975 - ketopantoate reductase, at 537,758 to 538,672
_02975
OLJFJH_02980: OLJFJH_02980 - Histidyl-tRNA synthetase, at 538,669 to 539,934
_02980
Position (kb) 536
537
538 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 535.558 kb on - strand, within OLJFJH_02965 at 535.621 kb on + strand, within OLJFJH_02965 at 535.621 kb on + strand, within OLJFJH_02965 at 535.657 kb on + strand, within OLJFJH_02965 at 535.894 kb on + strand, within OLJFJH_02965 at 535.937 kb on - strand, within OLJFJH_02965 at 536.158 kb on + strand at 536.708 kb on - strand, within OLJFJH_02970 at 536.708 kb on - strand, within OLJFJH_02970 at 536.812 kb on - strand, within OLJFJH_02970 at 537.041 kb on + strand, within OLJFJH_02970 at 537.072 kb on - strand, within OLJFJH_02970 at 537.146 kb on + strand, within OLJFJH_02970 at 537.300 kb on - strand, within OLJFJH_02970 at 537.492 kb on - strand, within OLJFJH_02970 at 537.668 kb on + strand at 537.865 kb on + strand, within OLJFJH_02975 at 538.091 kb on + strand, within OLJFJH_02975 at 538.094 kb on - strand, within OLJFJH_02975 at 538.173 kb on - strand, within OLJFJH_02975
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4 remove 535,558 - OLJFJH_02965 0.43 -0.6 535,621 + OLJFJH_02965 0.48 -0.9 535,621 + OLJFJH_02965 0.48 +0.2 535,657 + OLJFJH_02965 0.51 +0.4 535,894 + OLJFJH_02965 0.69 -2.2 535,937 - OLJFJH_02965 0.73 -0.8 536,158 + -0.1 536,708 - OLJFJH_02970 0.22 -1.2 536,708 - OLJFJH_02970 0.22 -2.4 536,812 - OLJFJH_02970 0.30 -0.9 537,041 + OLJFJH_02970 0.48 -1.7 537,072 - OLJFJH_02970 0.50 -0.8 537,146 + OLJFJH_02970 0.56 -1.0 537,300 - OLJFJH_02970 0.67 +0.4 537,492 - OLJFJH_02970 0.82 -1.2 537,668 + -3.2 537,865 + OLJFJH_02975 0.12 +3.5 538,091 + OLJFJH_02975 0.36 +1.8 538,094 - OLJFJH_02975 0.37 +1.4 538,173 - OLJFJH_02975 0.45 +1.1
Or see this region's nucleotide sequence