Strain Fitness in Erwinia amylovora T8 around OLJFJH_01770

Experiment: Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOLJFJH_01765 and OLJFJH_01770 are separated by 273 nucleotidesOLJFJH_01770 and OLJFJH_01775 are separated by 23 nucleotidesOLJFJH_01775 and OLJFJH_01780 are separated by 23 nucleotides OLJFJH_01765: OLJFJH_01765 - type VI secretion system tip protein VgrG, at 306,248 to 308,182 _01765 OLJFJH_01770: OLJFJH_01770 - hypothetical protein, at 308,456 to 309,523 _01770 OLJFJH_01775: OLJFJH_01775 - hypothetical protein, at 309,547 to 309,981 _01775 OLJFJH_01780: OLJFJH_01780 - flagellar biosynthesis protein FlgH, at 310,005 to 311,072 _01780 Position (kb) 308 309 310Strain fitness (log2 ratio) -2 -1 0 1at 307.758 kb on + strand, within OLJFJH_01765at 308.000 kb on + strandat 308.182 kb on + strandat 308.244 kb on - strandat 308.601 kb on + strand, within OLJFJH_01770at 308.831 kb on - strand, within OLJFJH_01770at 308.918 kb on - strand, within OLJFJH_01770at 308.939 kb on + strand, within OLJFJH_01770at 309.002 kb on - strand, within OLJFJH_01770at 309.022 kb on - strand, within OLJFJH_01770at 309.057 kb on + strand, within OLJFJH_01770at 309.057 kb on + strand, within OLJFJH_01770at 309.058 kb on - strand, within OLJFJH_01770at 309.058 kb on - strand, within OLJFJH_01770at 309.084 kb on + strand, within OLJFJH_01770at 309.100 kb on + strand, within OLJFJH_01770at 309.101 kb on - strand, within OLJFJH_01770at 309.101 kb on - strand, within OLJFJH_01770at 309.101 kb on - strand, within OLJFJH_01770at 309.191 kb on - strand, within OLJFJH_01770at 309.220 kb on + strand, within OLJFJH_01770at 309.221 kb on - strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.319 kb on + strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.320 kb on - strand, within OLJFJH_01770at 309.384 kb on - strand, within OLJFJH_01770at 309.436 kb on + strandat 309.436 kb on + strandat 309.438 kb on + strandat 309.438 kb on + strandat 309.438 kb on + strandat 309.438 kb on + strandat 310.185 kb on + strand, within OLJFJH_01780at 310.199 kb on + strand, within OLJFJH_01780at 310.199 kb on + strand, within OLJFJH_01780at 310.200 kb on - strand, within OLJFJH_01780at 310.229 kb on + strand, within OLJFJH_01780at 310.230 kb on - strand, within OLJFJH_01780at 310.298 kb on - strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.305 kb on + strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.306 kb on - strand, within OLJFJH_01780at 310.308 kb on - strand, within OLJFJH_01780at 310.388 kb on + strand, within OLJFJH_01780at 310.388 kb on + strand, within OLJFJH_01780at 310.388 kb on + strand, within OLJFJH_01780at 310.389 kb on - strand, within OLJFJH_01780at 310.389 kb on - strand, within OLJFJH_01780at 310.390 kb on + strand, within OLJFJH_01780at 310.390 kb on + strand, within OLJFJH_01780at 310.390 kb on + strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.391 kb on - strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.392 kb on + strand, within OLJFJH_01780at 310.393 kb on - strand, within OLJFJH_01780at 310.393 kb on - strand, within OLJFJH_01780at 310.393 kb on - strand, within OLJFJH_01780at 310.454 kb on - strand, within OLJFJH_01780at 310.493 kb on - strand, within OLJFJH_01780

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Per-strain Table

Position Strand Gene LocusTag Fraction Matrix:pear;Phage:inactivated cocktail;Temp:17;Samp:7-4
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307,758 + OLJFJH_01765 0.78 +0.4
308,000 + +0.9
308,182 + -0.8
308,244 - +0.1
308,601 + OLJFJH_01770 0.14 -2.1
308,831 - OLJFJH_01770 0.35 -1.3
308,918 - OLJFJH_01770 0.43 -1.4
308,939 + OLJFJH_01770 0.45 -0.3
309,002 - OLJFJH_01770 0.51 -1.0
309,022 - OLJFJH_01770 0.53 -1.5
309,057 + OLJFJH_01770 0.56 -1.0
309,057 + OLJFJH_01770 0.56 -1.7
309,058 - OLJFJH_01770 0.56 -1.1
309,058 - OLJFJH_01770 0.56 -2.6
309,084 + OLJFJH_01770 0.59 -1.8
309,100 + OLJFJH_01770 0.60 -1.7
309,101 - OLJFJH_01770 0.60 -1.4
309,101 - OLJFJH_01770 0.60 -1.3
309,101 - OLJFJH_01770 0.60 -1.5
309,191 - OLJFJH_01770 0.69 -1.2
309,220 + OLJFJH_01770 0.72 +0.2
309,221 - OLJFJH_01770 0.72 -1.9
309,319 + OLJFJH_01770 0.81 -1.1
309,319 + OLJFJH_01770 0.81 -1.1
309,319 + OLJFJH_01770 0.81 -2.2
309,319 + OLJFJH_01770 0.81 -0.8
309,320 - OLJFJH_01770 0.81 -1.2
309,320 - OLJFJH_01770 0.81 -1.3
309,320 - OLJFJH_01770 0.81 -1.0
309,320 - OLJFJH_01770 0.81 -0.7
309,384 - OLJFJH_01770 0.87 -1.5
309,436 + -0.8
309,436 + -0.8
309,438 + -1.6
309,438 + -1.1
309,438 + +0.9
309,438 + -0.7
310,185 + OLJFJH_01780 0.17 +0.4
310,199 + OLJFJH_01780 0.18 -1.1
310,199 + OLJFJH_01780 0.18 -0.3
310,200 - OLJFJH_01780 0.18 +0.1
310,229 + OLJFJH_01780 0.21 +1.1
310,230 - OLJFJH_01780 0.21 +0.4
310,298 - OLJFJH_01780 0.27 -1.3
310,305 + OLJFJH_01780 0.28 -0.2
310,305 + OLJFJH_01780 0.28 -1.5
310,305 + OLJFJH_01780 0.28 -0.6
310,305 + OLJFJH_01780 0.28 +0.4
310,305 + OLJFJH_01780 0.28 +1.4
310,305 + OLJFJH_01780 0.28 -0.3
310,305 + OLJFJH_01780 0.28 -0.9
310,305 + OLJFJH_01780 0.28 +0.7
310,306 - OLJFJH_01780 0.28 -0.1
310,306 - OLJFJH_01780 0.28 -0.3
310,306 - OLJFJH_01780 0.28 -1.8
310,306 - OLJFJH_01780 0.28 +0.2
310,306 - OLJFJH_01780 0.28 +0.5
310,306 - OLJFJH_01780 0.28 -0.2
310,306 - OLJFJH_01780 0.28 -1.2
310,308 - OLJFJH_01780 0.28 -0.0
310,388 + OLJFJH_01780 0.36 +0.6
310,388 + OLJFJH_01780 0.36 +0.7
310,388 + OLJFJH_01780 0.36 -0.6
310,389 - OLJFJH_01780 0.36 -0.5
310,389 - OLJFJH_01780 0.36 +0.0
310,390 + OLJFJH_01780 0.36 -0.0
310,390 + OLJFJH_01780 0.36 +0.8
310,390 + OLJFJH_01780 0.36 -0.6
310,391 - OLJFJH_01780 0.36 +0.9
310,391 - OLJFJH_01780 0.36 -0.4
310,391 - OLJFJH_01780 0.36 +0.0
310,391 - OLJFJH_01780 0.36 +0.1
310,392 + OLJFJH_01780 0.36 +1.2
310,392 + OLJFJH_01780 0.36 +0.8
310,392 + OLJFJH_01780 0.36 +0.1
310,392 + OLJFJH_01780 0.36 +0.5
310,393 - OLJFJH_01780 0.36 -0.3
310,393 - OLJFJH_01780 0.36 +0.7
310,393 - OLJFJH_01780 0.36 -0.4
310,454 - OLJFJH_01780 0.42 -2.5
310,493 - OLJFJH_01780 0.46 +0.4

Or see this region's nucleotide sequence