Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16685

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14325 and A4249_RS16685 are separated by 74 nucleotidesA4249_RS16685 and A4249_RS16825 are separated by 230 nucleotides A4249_RS14325: A4249_RS14325 - EAL domain-containing protein, at 2,890,697 to 2,893,099 _RS14325 A4249_RS16685: A4249_RS16685 - tRNA-Arg, at 2,893,174 to 2,893,245 _RS16685 A4249_RS16825: A4249_RS16825 - helix-turn-helix transcriptional regulator, at 2,893,476 to 2,893,952 _RS16825 Position (kb) 2893 2894Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2892.181 kb on + strand, within A4249_RS14325at 2892.259 kb on + strand, within A4249_RS14325at 2892.259 kb on + strand, within A4249_RS14325at 2892.269 kb on + strand, within A4249_RS14325at 2892.269 kb on + strand, within A4249_RS14325at 2892.269 kb on + strand, within A4249_RS14325at 2892.269 kb on + strand, within A4249_RS14325at 2892.270 kb on - strand, within A4249_RS14325at 2892.270 kb on - strand, within A4249_RS14325at 2892.270 kb on - strand, within A4249_RS14325at 2892.270 kb on - strand, within A4249_RS14325at 2892.270 kb on - strand, within A4249_RS14325at 2892.362 kb on + strand, within A4249_RS14325at 2892.363 kb on - strand, within A4249_RS14325at 2892.363 kb on - strand, within A4249_RS14325at 2892.363 kb on - strand, within A4249_RS14325at 2892.363 kb on - strand, within A4249_RS14325at 2892.363 kb on - strand, within A4249_RS14325at 2892.363 kb on - strand, within A4249_RS14325at 2892.729 kb on - strand, within A4249_RS14325at 2892.764 kb on + strand, within A4249_RS14325at 2892.765 kb on - strand, within A4249_RS14325at 2892.791 kb on + strand, within A4249_RS14325at 2892.791 kb on + strand, within A4249_RS14325at 2892.792 kb on - strand, within A4249_RS14325at 2892.792 kb on - strand, within A4249_RS14325at 2892.877 kb on + strandat 2892.878 kb on - strandat 2892.878 kb on - strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.083 kb on + strandat 2893.084 kb on - strandat 2893.084 kb on - strandat 2893.084 kb on - strandat 2893.084 kb on - strandat 2893.084 kb on - strandat 2893.097 kb on + strandat 2893.097 kb on + strandat 2893.097 kb on + strandat 2893.098 kb on - strandat 2893.113 kb on + strandat 2893.113 kb on + strandat 2893.113 kb on + strandat 2893.113 kb on + strandat 2893.113 kb on + strandat 2893.113 kb on + strandat 2893.113 kb on + strandat 2893.114 kb on - strandat 2893.114 kb on - strandat 2893.114 kb on - strandat 2893.114 kb on - strandat 2893.114 kb on - strandat 2893.114 kb on - strandat 2893.118 kb on + strandat 2893.118 kb on + strandat 2893.118 kb on + strandat 2893.118 kb on + strandat 2893.119 kb on - strandat 2893.119 kb on - strandat 2893.119 kb on - strandat 2893.119 kb on - strandat 2893.119 kb on - strandat 2893.119 kb on - strandat 2893.151 kb on + strandat 2893.169 kb on - strandat 2893.189 kb on + strand, within A4249_RS16685at 2893.189 kb on + strand, within A4249_RS16685at 2893.267 kb on + strandat 2893.267 kb on + strandat 2893.267 kb on + strandat 2893.267 kb on + strandat 2893.267 kb on + strandat 2893.268 kb on - strandat 2893.268 kb on - strandat 2893.281 kb on + strandat 2893.281 kb on + strandat 2893.281 kb on + strandat 2893.282 kb on - strandat 2893.282 kb on - strandat 2893.316 kb on - strandat 2893.316 kb on - strandat 2893.342 kb on + strandat 2893.342 kb on + strandat 2893.342 kb on + strandat 2893.343 kb on - strandat 2893.343 kb on - strandat 2893.343 kb on - strandat 2893.458 kb on - strandat 2893.482 kb on + strandat 2893.483 kb on - strandat 2893.515 kb on - strandat 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.580 kb on + strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.581 kb on - strand, within A4249_RS16825at 2893.583 kb on - strand, within A4249_RS16825at 2893.665 kb on + strand, within A4249_RS16825at 2893.674 kb on + strand, within A4249_RS16825at 2893.674 kb on + strand, within A4249_RS16825at 2893.883 kb on + strand, within A4249_RS16825at 2893.883 kb on + strand, within A4249_RS16825at 2893.883 kb on + strand, within A4249_RS16825at 2893.883 kb on + strand, within A4249_RS16825at 2893.884 kb on - strand, within A4249_RS16825at 2893.884 kb on - strand, within A4249_RS16825at 2893.884 kb on - strand, within A4249_RS16825at 2893.884 kb on - strand, within A4249_RS16825at 2893.884 kb on - strand, within A4249_RS16825at 2893.884 kb on - strand, within A4249_RS16825at 2894.130 kb on + strandat 2894.131 kb on - strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.143 kb on + strandat 2894.144 kb on - strandat 2894.144 kb on - strandat 2894.144 kb on - strandat 2894.206 kb on + strandat 2894.206 kb on + strandat 2894.206 kb on + strandat 2894.206 kb on + strandat 2894.206 kb on + strandat 2894.206 kb on + strandat 2894.206 kb on + strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.207 kb on - strandat 2894.208 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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2,892,181 + A4249_RS14325 0.62 +1.8
2,892,259 + A4249_RS14325 0.65 +0.5
2,892,259 + A4249_RS14325 0.65 +0.5
2,892,269 + A4249_RS14325 0.65 -0.3
2,892,269 + A4249_RS14325 0.65 +0.4
2,892,269 + A4249_RS14325 0.65 -0.1
2,892,269 + A4249_RS14325 0.65 +0.7
2,892,270 - A4249_RS14325 0.65 -0.3
2,892,270 - A4249_RS14325 0.65 +1.1
2,892,270 - A4249_RS14325 0.65 -1.6
2,892,270 - A4249_RS14325 0.65 +0.3
2,892,270 - A4249_RS14325 0.65 +1.7
2,892,362 + A4249_RS14325 0.69 +0.8
2,892,363 - A4249_RS14325 0.69 -0.4
2,892,363 - A4249_RS14325 0.69 +1.7
2,892,363 - A4249_RS14325 0.69 +2.6
2,892,363 - A4249_RS14325 0.69 +0.9
2,892,363 - A4249_RS14325 0.69 +0.5
2,892,363 - A4249_RS14325 0.69 +0.6
2,892,729 - A4249_RS14325 0.85 -0.3
2,892,764 + A4249_RS14325 0.86 -0.5
2,892,765 - A4249_RS14325 0.86 -1.0
2,892,791 + A4249_RS14325 0.87 -0.5
2,892,791 + A4249_RS14325 0.87 -1.8
2,892,792 - A4249_RS14325 0.87 +0.8
2,892,792 - A4249_RS14325 0.87 -0.8
2,892,877 + -0.7
2,892,878 - -0.9
2,892,878 - -2.0
2,893,083 + +0.0
2,893,083 + -0.7
2,893,083 + -0.1
2,893,083 + -0.0
2,893,083 + +0.1
2,893,083 + +0.9
2,893,083 + +0.0
2,893,083 + +0.4
2,893,084 - +0.2
2,893,084 - -0.1
2,893,084 - -0.1
2,893,084 - +0.3
2,893,084 - +0.9
2,893,097 + +0.1
2,893,097 + +0.2
2,893,097 + +0.2
2,893,098 - +1.0
2,893,113 + +0.9
2,893,113 + +0.1
2,893,113 + -0.2
2,893,113 + -0.3
2,893,113 + -0.5
2,893,113 + +0.4
2,893,113 + +0.3
2,893,114 - -1.5
2,893,114 - +0.8
2,893,114 - -0.6
2,893,114 - +0.3
2,893,114 - -0.2
2,893,114 - -0.5
2,893,118 + +0.6
2,893,118 + +0.3
2,893,118 + +1.3
2,893,118 + +0.4
2,893,119 - -0.7
2,893,119 - +0.5
2,893,119 - -0.0
2,893,119 - -0.4
2,893,119 - +0.2
2,893,119 - -0.2
2,893,151 + -0.1
2,893,169 - -1.7
2,893,189 + A4249_RS16685 0.21 +0.3
2,893,189 + A4249_RS16685 0.21 -1.3
2,893,267 + +1.1
2,893,267 + -1.1
2,893,267 + +0.4
2,893,267 + +0.1
2,893,267 + -0.3
2,893,268 - -0.7
2,893,268 - -0.7
2,893,281 + +0.1
2,893,281 + +1.5
2,893,281 + -0.3
2,893,282 - +0.4
2,893,282 - +0.2
2,893,316 - +0.7
2,893,316 - +0.4
2,893,342 + +0.8
2,893,342 + -0.5
2,893,342 + +0.2
2,893,343 - -1.7
2,893,343 - +0.1
2,893,343 - -0.1
2,893,458 - -0.6
2,893,482 + +0.6
2,893,483 - +0.3
2,893,515 - -0.6
2,893,580 + A4249_RS16825 0.22 -0.7
2,893,580 + A4249_RS16825 0.22 -0.6
2,893,580 + A4249_RS16825 0.22 +0.9
2,893,580 + A4249_RS16825 0.22 -0.2
2,893,580 + A4249_RS16825 0.22 +0.9
2,893,580 + A4249_RS16825 0.22 -0.2
2,893,580 + A4249_RS16825 0.22 -0.1
2,893,580 + A4249_RS16825 0.22 +1.1
2,893,580 + A4249_RS16825 0.22 +0.9
2,893,581 - A4249_RS16825 0.22 -0.4
2,893,581 - A4249_RS16825 0.22 +0.0
2,893,581 - A4249_RS16825 0.22 -0.8
2,893,581 - A4249_RS16825 0.22 +1.2
2,893,581 - A4249_RS16825 0.22 +0.2
2,893,581 - A4249_RS16825 0.22 +0.5
2,893,581 - A4249_RS16825 0.22 -0.1
2,893,583 - A4249_RS16825 0.22 -0.6
2,893,665 + A4249_RS16825 0.40 +0.1
2,893,674 + A4249_RS16825 0.42 -0.5
2,893,674 + A4249_RS16825 0.42 -0.4
2,893,883 + A4249_RS16825 0.85 +0.2
2,893,883 + A4249_RS16825 0.85 +0.2
2,893,883 + A4249_RS16825 0.85 -0.0
2,893,883 + A4249_RS16825 0.85 +0.6
2,893,884 - A4249_RS16825 0.86 +1.2
2,893,884 - A4249_RS16825 0.86 +0.3
2,893,884 - A4249_RS16825 0.86 -0.3
2,893,884 - A4249_RS16825 0.86 -3.1
2,893,884 - A4249_RS16825 0.86 -0.3
2,893,884 - A4249_RS16825 0.86 +0.7
2,894,130 + -1.7
2,894,131 - -0.5
2,894,143 + +0.1
2,894,143 + -0.8
2,894,143 + -0.1
2,894,143 + +0.4
2,894,143 + -0.0
2,894,143 + +0.4
2,894,143 + -0.4
2,894,143 + +0.9
2,894,143 + -0.9
2,894,144 - -1.0
2,894,144 - -1.5
2,894,144 - -0.4
2,894,206 + +0.2
2,894,206 + -0.6
2,894,206 + +0.8
2,894,206 + -0.1
2,894,206 + +0.1
2,894,206 + -1.4
2,894,206 + +1.0
2,894,207 - +0.9
2,894,207 - -0.2
2,894,207 - +1.3
2,894,207 - -0.6
2,894,207 - +0.4
2,894,207 - -0.8
2,894,207 - +0.9
2,894,207 - -0.3
2,894,207 - -0.2
2,894,207 - +0.5
2,894,208 - -0.2

Or see this region's nucleotide sequence