Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS16425

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS00400 and A4249_RS16425 are separated by 316 nucleotidesA4249_RS16425 and A4249_RS00410 are separated by 375 nucleotidesA4249_RS00410 and A4249_RS00415 are separated by 61 nucleotides A4249_RS00400: A4249_RS00400 - YdiU family protein, at 66,802 to 68,214 _RS00400 A4249_RS16425: A4249_RS16425 - hypothetical protein, at 68,531 to 69,388 _RS16425 A4249_RS00410: A4249_RS00410 - OmpA family protein, at 69,764 to 70,315 _RS00410 A4249_RS00415: A4249_RS00415 - NAD-dependent deacylase, at 70,377 to 71,087 _RS00415 Position (kb) 68 69 70Strain fitness (log2 ratio) -2 -1 0 1at 67.580 kb on + strand, within A4249_RS00400at 67.580 kb on + strand, within A4249_RS00400at 67.580 kb on + strand, within A4249_RS00400at 67.580 kb on + strand, within A4249_RS00400at 67.580 kb on + strand, within A4249_RS00400at 67.580 kb on + strand, within A4249_RS00400at 67.581 kb on - strand, within A4249_RS00400at 67.587 kb on + strand, within A4249_RS00400at 67.587 kb on + strand, within A4249_RS00400at 67.588 kb on - strand, within A4249_RS00400at 67.634 kb on + strand, within A4249_RS00400at 67.634 kb on + strand, within A4249_RS00400at 67.635 kb on - strand, within A4249_RS00400at 67.635 kb on - strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.964 kb on + strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 67.965 kb on - strand, within A4249_RS00400at 68.156 kb on + strandat 68.156 kb on + strandat 68.156 kb on + strandat 68.156 kb on + strandat 68.157 kb on - strandat 68.157 kb on - strandat 68.194 kb on + strandat 68.195 kb on + strandat 68.222 kb on + strandat 68.222 kb on + strandat 68.222 kb on + strandat 68.223 kb on - strandat 68.223 kb on - strandat 68.223 kb on - strandat 68.223 kb on - strandat 68.331 kb on + strandat 68.331 kb on + strandat 68.331 kb on + strandat 68.331 kb on + strandat 68.331 kb on + strandat 68.331 kb on + strandat 68.331 kb on + strandat 68.332 kb on - strandat 68.332 kb on - strandat 68.332 kb on - strandat 68.332 kb on - strandat 68.350 kb on + strandat 68.351 kb on - strandat 68.351 kb on - strandat 68.351 kb on - strandat 68.450 kb on + strandat 68.478 kb on + strandat 68.478 kb on + strandat 68.478 kb on + strandat 68.478 kb on + strandat 68.478 kb on + strandat 68.478 kb on + strandat 68.479 kb on - strandat 68.479 kb on - strandat 68.479 kb on - strandat 68.483 kb on + strandat 68.483 kb on + strandat 68.483 kb on + strandat 68.484 kb on - strandat 68.484 kb on - strandat 68.484 kb on - strandat 68.484 kb on - strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.487 kb on + strandat 68.488 kb on - strandat 68.488 kb on - strandat 68.488 kb on - strandat 68.795 kb on + strand, within A4249_RS16425at 68.796 kb on - strand, within A4249_RS16425at 68.796 kb on - strand, within A4249_RS16425at 69.450 kb on - strandat 69.511 kb on + strandat 69.511 kb on + strandat 69.511 kb on + strandat 69.512 kb on - strandat 69.512 kb on - strandat 69.625 kb on - strandat 69.634 kb on - strandat 69.646 kb on + strandat 69.646 kb on + strandat 69.686 kb on - strandat 69.686 kb on - strandat 69.968 kb on + strand, within A4249_RS00410at 69.968 kb on + strand, within A4249_RS00410at 69.969 kb on - strand, within A4249_RS00410at 69.969 kb on - strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.091 kb on + strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.092 kb on - strand, within A4249_RS00410at 70.109 kb on + strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.110 kb on - strand, within A4249_RS00410at 70.138 kb on + strand, within A4249_RS00410at 70.138 kb on + strand, within A4249_RS00410at 70.229 kb on + strand, within A4249_RS00410at 70.229 kb on + strand, within A4249_RS00410at 70.229 kb on + strand, within A4249_RS00410at 70.230 kb on - strand, within A4249_RS00410at 70.230 kb on - strand, within A4249_RS00410at 70.314 kb on - strandat 70.314 kb on - strandat 70.378 kb on + strandat 70.379 kb on - strandat 70.379 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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67,580 + A4249_RS00400 0.55 +0.5
67,580 + A4249_RS00400 0.55 -0.5
67,580 + A4249_RS00400 0.55 +0.5
67,580 + A4249_RS00400 0.55 -0.2
67,580 + A4249_RS00400 0.55 -0.9
67,580 + A4249_RS00400 0.55 +0.3
67,581 - A4249_RS00400 0.55 +1.2
67,587 + A4249_RS00400 0.56 -1.2
67,587 + A4249_RS00400 0.56 +0.1
67,588 - A4249_RS00400 0.56 -0.0
67,634 + A4249_RS00400 0.59 +0.3
67,634 + A4249_RS00400 0.59 +1.3
67,635 - A4249_RS00400 0.59 -0.2
67,635 - A4249_RS00400 0.59 -0.3
67,964 + A4249_RS00400 0.82 +1.0
67,964 + A4249_RS00400 0.82 -0.0
67,964 + A4249_RS00400 0.82 -0.3
67,964 + A4249_RS00400 0.82 -0.5
67,964 + A4249_RS00400 0.82 +0.3
67,964 + A4249_RS00400 0.82 -0.8
67,964 + A4249_RS00400 0.82 -0.1
67,965 - A4249_RS00400 0.82 -0.9
67,965 - A4249_RS00400 0.82 +0.5
67,965 - A4249_RS00400 0.82 -0.3
67,965 - A4249_RS00400 0.82 +0.6
67,965 - A4249_RS00400 0.82 -0.2
67,965 - A4249_RS00400 0.82 +0.7
67,965 - A4249_RS00400 0.82 -0.1
67,965 - A4249_RS00400 0.82 +0.1
68,156 + -0.5
68,156 + -0.2
68,156 + +1.0
68,156 + -0.2
68,157 - +0.6
68,157 - +1.1
68,194 + +0.3
68,195 + -0.0
68,222 + +0.3
68,222 + +0.7
68,222 + -0.9
68,223 - -0.1
68,223 - +0.5
68,223 - -0.8
68,223 - -0.8
68,331 + -0.1
68,331 + -0.4
68,331 + -0.1
68,331 + +0.2
68,331 + +0.1
68,331 + -0.9
68,331 + -0.9
68,332 - -0.2
68,332 - +0.0
68,332 - +0.7
68,332 - +0.2
68,350 + +0.5
68,351 - +0.2
68,351 - +0.3
68,351 - -0.3
68,450 + -1.1
68,478 + +1.2
68,478 + -0.3
68,478 + -0.4
68,478 + +0.2
68,478 + +0.3
68,478 + +0.2
68,479 - -0.1
68,479 - +0.3
68,479 - -0.1
68,483 + -0.4
68,483 + +0.3
68,483 + -0.6
68,484 - +0.7
68,484 - -0.3
68,484 - -0.1
68,484 - -0.0
68,487 + +0.0
68,487 + +0.3
68,487 + +0.2
68,487 + +0.3
68,487 + +0.5
68,487 + -0.2
68,487 + -0.1
68,487 + +0.0
68,488 - +0.4
68,488 - -1.1
68,488 - -0.7
68,795 + A4249_RS16425 0.31 +0.4
68,796 - A4249_RS16425 0.31 +0.4
68,796 - A4249_RS16425 0.31 -1.0
69,450 - -0.4
69,511 + +0.5
69,511 + +0.3
69,511 + +0.8
69,512 - -0.1
69,512 - -0.2
69,625 - -0.7
69,634 - +0.1
69,646 + -0.4
69,646 + -0.7
69,686 - +1.6
69,686 - -0.1
69,968 + A4249_RS00410 0.37 -0.9
69,968 + A4249_RS00410 0.37 +0.0
69,969 - A4249_RS00410 0.37 -0.4
69,969 - A4249_RS00410 0.37 +0.2
70,091 + A4249_RS00410 0.59 +1.0
70,091 + A4249_RS00410 0.59 -1.9
70,091 + A4249_RS00410 0.59 +0.8
70,091 + A4249_RS00410 0.59 -0.4
70,092 - A4249_RS00410 0.59 -0.9
70,092 - A4249_RS00410 0.59 +1.5
70,092 - A4249_RS00410 0.59 -1.4
70,092 - A4249_RS00410 0.59 -0.2
70,109 + A4249_RS00410 0.62 -0.3
70,110 - A4249_RS00410 0.63 +1.3
70,110 - A4249_RS00410 0.63 +0.9
70,110 - A4249_RS00410 0.63 +0.7
70,110 - A4249_RS00410 0.63 -0.7
70,138 + A4249_RS00410 0.68 -1.3
70,138 + A4249_RS00410 0.68 +0.1
70,229 + A4249_RS00410 0.84 +0.0
70,229 + A4249_RS00410 0.84 +0.4
70,229 + A4249_RS00410 0.84 +0.1
70,230 - A4249_RS00410 0.84 -0.1
70,230 - A4249_RS00410 0.84 +0.0
70,314 - -0.0
70,314 - -1.3
70,378 + -0.6
70,379 - -0.1
70,379 - +0.2

Or see this region's nucleotide sequence