Strain Fitness in Brevundimonas sp. GW460-12-10-14-LB2 around A4249_RS14970

Experiment: Guanine 0.6617 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntA4249_RS14960 and A4249_RS14965 are separated by 98 nucleotidesA4249_RS14965 and A4249_RS14970 overlap by 4 nucleotidesA4249_RS14970 and A4249_RS14975 are separated by 68 nucleotidesA4249_RS14975 and A4249_RS14980 are separated by 47 nucleotides A4249_RS14960: A4249_RS14960 - septation protein IspZ, at 3,027,632 to 3,028,252 _RS14960 A4249_RS14965: A4249_RS14965 - MarR family transcriptional regulator, at 3,028,351 to 3,028,965 _RS14965 A4249_RS14970: A4249_RS14970 - phasin, at 3,028,962 to 3,029,360 _RS14970 A4249_RS14975: A4249_RS14975 - creatininase family protein, at 3,029,429 to 3,030,202 _RS14975 A4249_RS14980: A4249_RS14980 - TetR/AcrR family transcriptional regulator, at 3,030,250 to 3,030,867 _RS14980 Position (kb) 3028 3029 3030Strain fitness (log2 ratio) -2 -1 0 1at 3027.995 kb on + strand, within A4249_RS14960at 3027.995 kb on + strand, within A4249_RS14960at 3027.995 kb on + strand, within A4249_RS14960at 3027.996 kb on - strand, within A4249_RS14960at 3027.996 kb on - strand, within A4249_RS14960at 3027.996 kb on - strand, within A4249_RS14960at 3028.064 kb on + strand, within A4249_RS14960at 3028.064 kb on + strand, within A4249_RS14960at 3028.064 kb on + strand, within A4249_RS14960at 3028.065 kb on - strand, within A4249_RS14960at 3028.065 kb on - strand, within A4249_RS14960at 3028.083 kb on + strand, within A4249_RS14960at 3028.083 kb on + strand, within A4249_RS14960at 3028.084 kb on - strand, within A4249_RS14960at 3028.084 kb on - strand, within A4249_RS14960at 3028.084 kb on - strand, within A4249_RS14960at 3028.084 kb on - strand, within A4249_RS14960at 3028.250 kb on + strandat 3028.251 kb on - strandat 3028.251 kb on - strandat 3028.251 kb on - strandat 3028.303 kb on - strandat 3028.316 kb on + strandat 3028.316 kb on + strandat 3028.316 kb on + strandat 3028.316 kb on + strandat 3028.316 kb on + strandat 3028.316 kb on + strandat 3028.317 kb on - strandat 3028.317 kb on - strandat 3028.317 kb on - strandat 3028.317 kb on - strandat 3028.317 kb on - strandat 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.447 kb on + strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.448 kb on - strand, within A4249_RS14965at 3028.840 kb on - strand, within A4249_RS14965at 3028.964 kb on - strandat 3028.964 kb on - strandat 3029.101 kb on + strand, within A4249_RS14970at 3029.101 kb on + strand, within A4249_RS14970at 3029.101 kb on + strand, within A4249_RS14970at 3029.101 kb on + strand, within A4249_RS14970at 3029.101 kb on + strand, within A4249_RS14970at 3029.101 kb on + strand, within A4249_RS14970at 3029.101 kb on + strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.102 kb on - strand, within A4249_RS14970at 3029.629 kb on - strand, within A4249_RS14975at 3029.629 kb on - strand, within A4249_RS14975at 3029.629 kb on - strand, within A4249_RS14975at 3029.874 kb on + strand, within A4249_RS14975at 3029.874 kb on + strand, within A4249_RS14975at 3029.874 kb on + strand, within A4249_RS14975at 3029.875 kb on - strand, within A4249_RS14975at 3029.998 kb on + strand, within A4249_RS14975at 3029.999 kb on - strand, within A4249_RS14975at 3029.999 kb on - strand, within A4249_RS14975at 3030.116 kb on + strand, within A4249_RS14975at 3030.116 kb on + strand, within A4249_RS14975at 3030.117 kb on - strand, within A4249_RS14975at 3030.117 kb on - strand, within A4249_RS14975at 3030.237 kb on + strandat 3030.238 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Guanine 0.6617 mM (C)
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3,027,995 + A4249_RS14960 0.58 -1.1
3,027,995 + A4249_RS14960 0.58 -0.4
3,027,995 + A4249_RS14960 0.58 -0.6
3,027,996 - A4249_RS14960 0.59 -0.3
3,027,996 - A4249_RS14960 0.59 -0.5
3,027,996 - A4249_RS14960 0.59 +0.1
3,028,064 + A4249_RS14960 0.70 +0.5
3,028,064 + A4249_RS14960 0.70 -0.1
3,028,064 + A4249_RS14960 0.70 -0.5
3,028,065 - A4249_RS14960 0.70 +0.7
3,028,065 - A4249_RS14960 0.70 +1.4
3,028,083 + A4249_RS14960 0.73 +0.3
3,028,083 + A4249_RS14960 0.73 +0.2
3,028,084 - A4249_RS14960 0.73 +0.3
3,028,084 - A4249_RS14960 0.73 -0.3
3,028,084 - A4249_RS14960 0.73 +0.1
3,028,084 - A4249_RS14960 0.73 -2.1
3,028,250 + -1.6
3,028,251 - -0.9
3,028,251 - +0.4
3,028,251 - +0.4
3,028,303 - +0.4
3,028,316 + -0.3
3,028,316 + -0.2
3,028,316 + +0.8
3,028,316 + +0.4
3,028,316 + -0.2
3,028,316 + -0.7
3,028,317 - -0.4
3,028,317 - -0.2
3,028,317 - +0.1
3,028,317 - -1.8
3,028,317 - -1.7
3,028,447 + A4249_RS14965 0.16 -0.5
3,028,447 + A4249_RS14965 0.16 -0.5
3,028,447 + A4249_RS14965 0.16 +0.2
3,028,447 + A4249_RS14965 0.16 +0.7
3,028,447 + A4249_RS14965 0.16 +0.4
3,028,447 + A4249_RS14965 0.16 -0.3
3,028,447 + A4249_RS14965 0.16 +0.3
3,028,447 + A4249_RS14965 0.16 -0.2
3,028,448 - A4249_RS14965 0.16 -1.7
3,028,448 - A4249_RS14965 0.16 -0.8
3,028,448 - A4249_RS14965 0.16 -0.0
3,028,448 - A4249_RS14965 0.16 -0.1
3,028,448 - A4249_RS14965 0.16 +0.3
3,028,448 - A4249_RS14965 0.16 +0.6
3,028,448 - A4249_RS14965 0.16 -0.7
3,028,448 - A4249_RS14965 0.16 +0.3
3,028,840 - A4249_RS14965 0.80 +0.6
3,028,964 - -0.8
3,028,964 - +0.4
3,029,101 + A4249_RS14970 0.35 +0.4
3,029,101 + A4249_RS14970 0.35 +0.4
3,029,101 + A4249_RS14970 0.35 +0.4
3,029,101 + A4249_RS14970 0.35 +0.7
3,029,101 + A4249_RS14970 0.35 -0.1
3,029,101 + A4249_RS14970 0.35 -0.1
3,029,101 + A4249_RS14970 0.35 -0.4
3,029,102 - A4249_RS14970 0.35 +0.1
3,029,102 - A4249_RS14970 0.35 +0.9
3,029,102 - A4249_RS14970 0.35 -0.0
3,029,102 - A4249_RS14970 0.35 -0.8
3,029,102 - A4249_RS14970 0.35 -1.4
3,029,102 - A4249_RS14970 0.35 +0.6
3,029,102 - A4249_RS14970 0.35 +0.6
3,029,629 - A4249_RS14975 0.26 -1.9
3,029,629 - A4249_RS14975 0.26 +0.5
3,029,629 - A4249_RS14975 0.26 -0.5
3,029,874 + A4249_RS14975 0.57 -0.1
3,029,874 + A4249_RS14975 0.57 +0.2
3,029,874 + A4249_RS14975 0.57 +0.5
3,029,875 - A4249_RS14975 0.58 +0.1
3,029,998 + A4249_RS14975 0.74 -1.9
3,029,999 - A4249_RS14975 0.74 -1.1
3,029,999 - A4249_RS14975 0.74 -0.7
3,030,116 + A4249_RS14975 0.89 +0.5
3,030,116 + A4249_RS14975 0.89 +0.2
3,030,117 - A4249_RS14975 0.89 +0.3
3,030,117 - A4249_RS14975 0.89 +0.2
3,030,237 + -0.0
3,030,238 - -0.6

Or see this region's nucleotide sequence